RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 NISCHQ9Y2I1 1504 aa22.42■■□□□ 1.18
CDH4-201ENST00000543233 SHROOM4Q9ULL8 1493 aa19.55■□□□□ 0.72
CDH4-201ENST00000543233 PELP1Q8IZL8 1130 aaKnown RBP19.48■□□□□ 0.71
CDH4-201ENST00000543233 DCAF8L2P0C7V8 631 aa19.34■□□□□ 0.69
CDH4-201ENST00000543233 SUPT5HO00267 1087 aaKnown RBP19.13■□□□□ 0.65
CDH4-201ENST00000543233 MYT1Q01538 1121 aa18.97■□□□□ 0.63
CDH4-201ENST00000543233 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
CDH4-201ENST00000543233 CCDC180Q9P1Z9 1646 aa18.87■□□□□ 0.61
CDH4-201ENST00000543233 HRCP23327 699 aa18.85■□□□□ 0.61
CDH4-201ENST00000543233 PPARGC1BQ86YN6 1023 aaKnown RBP18.64■□□□□ 0.57
CDH4-201ENST00000543233 ABCC9O60706 1549 aa18.51■□□□□ 0.55
CDH4-201ENST00000543233 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
CDH4-201ENST00000543233 CHIC1Q5VXU3 224 aa18.27■□□□□ 0.51
CDH4-201ENST00000543233 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.51
CDH4-201ENST00000543233 DCAF1Q9Y4B6 1507 aa18.15■□□□□ 0.5
CDH4-201ENST00000543233 MYO15BQ96JP2 1530 aa18.09■□□□□ 0.49
CDH4-201ENST00000543233 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
CDH4-201ENST00000543233 TTBK1Q5TCY1 1321 aaPredicted RBP17.96■□□□□ 0.47
CDH4-201ENST00000543233 LOC105371045A0A1W2PR82 267 aa17.92■□□□□ 0.46
CDH4-201ENST00000543233 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
CDH4-201ENST00000543233 BCL11AQ9H165 835 aa17.79■□□□□ 0.44
CDH4-201ENST00000543233 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
CDH4-201ENST00000543233 FAM9AQ8IZU1 332 aaPredicted RBP17.77■□□□□ 0.44
CDH4-201ENST00000543233 PRKCSHP14314 528 aaPredicted RBP17.75■□□□□ 0.43
CDH4-201ENST00000543233 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
CDH4-201ENST00000543233 TRIM41Q8WV44 630 aa17.68■□□□□ 0.42
CDH4-201ENST00000543233 GTF3C3Q9Y5Q9 886 aa17.68■□□□□ 0.42
CDH4-201ENST00000543233 ACIN1Q9UKV3 1341 aaKnown RBP17.65■□□□□ 0.42
CDH4-201ENST00000543233 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
CDH4-201ENST00000543233 NACADO15069 1562 aa17.62■□□□□ 0.41
CDH4-201ENST00000543233 NEUROD1Q13562 356 aa17.61■□□□□ 0.41
CDH4-201ENST00000543233 CENPBP07199 599 aaPredicted RBP17.58■□□□□ 0.4
CDH4-201ENST00000543233 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
CDH4-201ENST00000543233 MROH2BQ7Z745 1585 aa17.52■□□□□ 0.4
CDH4-201ENST00000543233 WIZO95785 1651 aa17.4■□□□□ 0.38
CDH4-201ENST00000543233 ZEB1P37275 1124 aaPredicted RBP17.39■□□□□ 0.37
CDH4-201ENST00000543233 ERICH6Q7L0X2 663 aa17.29■□□□□ 0.36
CDH4-201ENST00000543233 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
CDH4-201ENST00000543233 BAZ1AQ9NRL2 1556 aaPredicted RBP17.2■□□□□ 0.34
CDH4-201ENST00000543233 ANP32EQ9BTT0 268 aa17.14■□□□□ 0.34
CDH4-201ENST00000543233 UNC13AQ9UPW8 1703 aa17.13■□□□□ 0.33
CDH4-201ENST00000543233 CCDC88BA6NC98 1476 aa17.08■□□□□ 0.32
CDH4-201ENST00000543233 ABCC8Q09428 1581 aa17.08■□□□□ 0.32
CDH4-201ENST00000543233 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
CDH4-201ENST00000543233 YTHDC1Q96MU7 727 aaKnown RBP17.06■□□□□ 0.32
CDH4-201ENST00000543233 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
CDH4-201ENST00000543233 CSRNP3Q8WYN3 585 aa17.05■□□□□ 0.32
CDH4-201ENST00000543233 TOP2AP11388 1531 aaKnown RBP17■□□□□ 0.31
CDH4-201ENST00000543233 APLP2Q06481 763 aa16.97■□□□□ 0.31
CDH4-201ENST00000543233 DIEXFQ68CQ4 756 aaKnown RBP16.96■□□□□ 0.31
CDH4-201ENST00000543233 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
CDH4-201ENST00000543233 SMARCA2P51531 1590 aa16.94■□□□□ 0.3
CDH4-201ENST00000543233 SOGA1O94964 1423 aa16.92■□□□□ 0.3
CDH4-201ENST00000543233 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
CDH4-201ENST00000543233 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
CDH4-201ENST00000543233 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
CDH4-201ENST00000543233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.8■□□□□ 0.28
CDH4-201ENST00000543233 BAZ1BQ9UIG0 1483 aaKnown RBP16.76■□□□□ 0.27
CDH4-201ENST00000543233 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
CDH4-201ENST00000543233 WRNQ14191 1432 aaPredicted RBP eCLIP16.76■□□□□ 0.27
CDH4-201ENST00000543233 DNAJC5BQ9UF47 199 aa16.74■□□□□ 0.27
CDH4-201ENST00000543233 CEP162Q5TB80 1403 aa16.72■□□□□ 0.27
CDH4-201ENST00000543233 CCER1Q8TC90 406 aaPredicted RBP16.7■□□□□ 0.26
CDH4-201ENST00000543233 TSHZ2Q9NRE2 1034 aa16.65■□□□□ 0.26
CDH4-201ENST00000543233 ANO8Q9HCE9 1232 aaPredicted RBP16.64■□□□□ 0.25
CDH4-201ENST00000543233 TNIKQ9UKE5 1360 aa16.61■□□□□ 0.25
CDH4-201ENST00000543233 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
CDH4-201ENST00000543233 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
CDH4-201ENST00000543233 GOLGA3Q08378 1498 aa16.55■□□□□ 0.24
CDH4-201ENST00000543233 EEA1Q15075 1411 aa16.54■□□□□ 0.24
CDH4-201ENST00000543233 HNRNPUL2Q1KMD3 747 aaKnown RBP16.54■□□□□ 0.24
CDH4-201ENST00000543233 SUPT16HQ9Y5B9 1047 aaKnown RBP16.5■□□□□ 0.23
CDH4-201ENST00000543233 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
CDH4-201ENST00000543233 RAPGEF2Q9Y4G8 1499 aa16.47■□□□□ 0.23
CDH4-201ENST00000543233 CLIP1P30622 1438 aa16.46■□□□□ 0.23
CDH4-201ENST00000543233 CEP164Q9UPV0 1460 aa16.45■□□□□ 0.22
CDH4-201ENST00000543233 CCDC136Q96JN2 1154 aa16.43■□□□□ 0.22
CDH4-201ENST00000543233 MIER1Q8N108 512 aa16.41■□□□□ 0.22
CDH4-201ENST00000543233 SLC24A1O60721 1099 aa16.4■□□□□ 0.22
CDH4-201ENST00000543233 NCAPD3P42695 1498 aa16.38■□□□□ 0.21
CDH4-201ENST00000543233 BCANQ96GW7 911 aa16.35■□□□□ 0.21
CDH4-201ENST00000543233 SALL2Q9Y467 1007 aaPredicted RBP16.34■□□□□ 0.21
CDH4-201ENST00000543233 ZNF316A6NFI3 1004 aaPredicted RBP16.34■□□□□ 0.21
CDH4-201ENST00000543233 TOP2BQ02880 1626 aa16.3■□□□□ 0.2
CDH4-201ENST00000543233 CUX1P39880 1505 aa16.28■□□□□ 0.2
CDH4-201ENST00000543233 EIF5BO60841 1220 aaKnown RBP16.28■□□□□ 0.2
CDH4-201ENST00000543233 KIF21BO75037 1637 aa16.28■□□□□ 0.2
CDH4-201ENST00000543233 VPS8Q8N3P4 1428 aa16.27■□□□□ 0.2
CDH4-201ENST00000543233 HMGXB3Q12766 1538 aa16.27■□□□□ 0.19
CDH4-201ENST00000543233 ITGAEP38570 1179 aa16.26■□□□□ 0.19
CDH4-201ENST00000543233 ATP1B4Q9UN42 357 aaPredicted RBP16.25■□□□□ 0.19
CDH4-201ENST00000543233 CLSPNQ9HAW4 1339 aa16.25■□□□□ 0.19
CDH4-201ENST00000543233 KIF27Q86VH2 1401 aa16.24■□□□□ 0.19
CDH4-201ENST00000543233 CFTRP13569 1480 aa16.24■□□□□ 0.19
CDH4-201ENST00000543233 KANK4Q5T7N3 995 aaPredicted RBP16.24■□□□□ 0.19
CDH4-201ENST00000543233 P3H3Q8IVL6 736 aa16.23■□□□□ 0.19
CDH4-201ENST00000543233 UBE2Q2Q8WVN8 375 aa16.23■□□□□ 0.19
CDH4-201ENST00000543233 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
CDH4-201ENST00000543233 RBM19Q9Y4C8 960 aaKnown RBP16.22■□□□□ 0.19
CDH4-201ENST00000543233 DEKP35659 375 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms