RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	TARBP1	Q13395	1621 aa	Known RBP	12.76	□□□□□ -0.37
SPIDR-223	ENST00000524033	EIF4G3	O43432	1585 aa	Known RBP	12.75	□□□□□ -0.37
SPIDR-223	ENST00000524033	CYB5RL	Q6IPT4	315 aa		12.75	□□□□□ -0.37
SPIDR-223	ENST00000524033	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.75	□□□□□ -0.37
SPIDR-223	ENST00000524033	CAPN15	O75808	1086 aa		12.74	□□□□□ -0.37
SPIDR-223	ENST00000524033	TRH	P20396	242 aa	Predicted RBP	12.74	□□□□□ -0.37
SPIDR-223	ENST00000524033	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.74	□□□□□ -0.37
SPIDR-223	ENST00000524033	FGD5	Q6ZNL6	1462 aa		12.73	□□□□□ -0.37
SPIDR-223	ENST00000524033	C1QBP	Q07021	282 aa	Known RBP	12.72	□□□□□ -0.37
SPIDR-223	ENST00000524033	CUX1	P39880	1505 aa		12.72	□□□□□ -0.37
SPIDR-223	ENST00000524033	ARHGEF11	O15085	1522 aa		12.69	□□□□□ -0.38
SPIDR-223	ENST00000524033	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.68	□□□□□ -0.38
SPIDR-223	ENST00000524033	RIMBP3C	A6NJZ7	1639 aa		12.68	□□□□□ -0.38
SPIDR-223	ENST00000524033	RIMBP3B	A6NNM3	1639 aa		12.68	□□□□□ -0.38
SPIDR-223	ENST00000524033	RIMBP3	Q9UFD9	1639 aa		12.68	□□□□□ -0.38
SPIDR-223	ENST00000524033	GRIN2B	Q13224	1484 aa		12.66	□□□□□ -0.38
SPIDR-223	ENST00000524033	SNAPC4	Q5SXM2	1469 aa		12.66	□□□□□ -0.38
SPIDR-223	ENST00000524033	FKBP8	Q14318	412 aa		12.65	□□□□□ -0.38
SPIDR-223	ENST00000524033	GAPVD1	Q14C86	1478 aa		12.63	□□□□□ -0.39
SPIDR-223	ENST00000524033	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.63	□□□□□ -0.39
SPIDR-223	ENST00000524033	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.62	□□□□□ -0.39
SPIDR-223	ENST00000524033	PCGF6	Q9BYE7	350 aa		12.61	□□□□□ -0.39
SPIDR-223	ENST00000524033	WDR97	A6NE52	1622 aa		12.61	□□□□□ -0.39
SPIDR-223	ENST00000524033	SYNJ2	O15056	1496 aa		12.6	□□□□□ -0.39
SPIDR-223	ENST00000524033	ABCA10	Q8WWZ4	1543 aa		12.59	□□□□□ -0.39
SPIDR-223	ENST00000524033	CHD1	O14646	1710 aa		12.58	□□□□□ -0.4
SPIDR-223	ENST00000524033	ARAP1	Q96P48	1450 aa		12.58	□□□□□ -0.4
SPIDR-223	ENST00000524033	POLA2	Q14181	598 aa		12.54	□□□□□ -0.4
SPIDR-223	ENST00000524033	SYNJ1	O43426	1573 aa		12.54	□□□□□ -0.4
SPIDR-223	ENST00000524033	CLASP1	Q7Z460	1538 aa		12.52	□□□□□ -0.4
SPIDR-223	ENST00000524033	LOC105371045	A0A1W2PR82	267 aa		12.5	□□□□□ -0.41
SPIDR-223	ENST00000524033	TOP2B	Q02880	1626 aa		12.5	□□□□□ -0.41
SPIDR-223	ENST00000524033	ABCB7	O75027	752 aa		12.49	□□□□□ -0.41
SPIDR-223	ENST00000524033	ABCA5	Q8WWZ7	1642 aa		12.48	□□□□□ -0.41
SPIDR-223	ENST00000524033	FHAD1	B1AJZ9	1412 aa		12.48	□□□□□ -0.41
SPIDR-223	ENST00000524033	GRIN2A	Q12879	1464 aa		12.47	□□□□□ -0.41
SPIDR-223	ENST00000524033	TRIM26	Q12899	539 aa	Predicted RBP	12.47	□□□□□ -0.41
SPIDR-223	ENST00000524033	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.47	□□□□□ -0.41
SPIDR-223	ENST00000524033	PBRM1	Q86U86	1689 aa		12.44	□□□□□ -0.42
SPIDR-223	ENST00000524033	BIVM-ERCC5	R4GMW8	1640 aa		12.44	□□□□□ -0.42
SPIDR-223	ENST00000524033	JPH4	Q96JJ6	628 aa		12.43	□□□□□ -0.42
SPIDR-223	ENST00000524033	NUP160	Q12769	1436 aa		12.43	□□□□□ -0.42
SPIDR-223	ENST00000524033	ERICH3	Q5RHP9	1530 aa		12.42	□□□□□ -0.42
SPIDR-223	ENST00000524033	CACNB1	Q02641	598 aa	Predicted RBP	12.41	□□□□□ -0.42
SPIDR-223	ENST00000524033	ADAMTS12	P58397	1594 aa		12.39	□□□□□ -0.43
SPIDR-223	ENST00000524033	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.39	□□□□□ -0.43
SPIDR-223	ENST00000524033	IGF1R	P08069	1367 aa		12.39	□□□□□ -0.43
SPIDR-223	ENST00000524033	CEP170	Q5SW79	1584 aa		12.38	□□□□□ -0.43
SPIDR-223	ENST00000524033	PRG4	Q92954	1404 aa	Predicted RBP	12.37	□□□□□ -0.43
SPIDR-223	ENST00000524033	KIF27	Q86VH2	1401 aa		12.36	□□□□□ -0.43
SPIDR-223	ENST00000524033	ERCC6L2	Q5T890	1561 aa		12.35	□□□□□ -0.43
SPIDR-223	ENST00000524033	SPDYE4	A6NLX3	237 aa		12.33	□□□□□ -0.44
SPIDR-223	ENST00000524033	MKRN4P	Q13434	485 aa	Predicted RBP	12.33	□□□□□ -0.44
SPIDR-223	ENST00000524033	NPM1	P06748	294 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
SPIDR-223	ENST00000524033	DSG3	P32926	999 aa		12.31	□□□□□ -0.44
SPIDR-223	ENST00000524033	ZEB1	P37275	1124 aa	Predicted RBP	12.3	□□□□□ -0.44
SPIDR-223	ENST00000524033	CARMIL1	Q5VZK9	1371 aa		12.29	□□□□□ -0.44
SPIDR-223	ENST00000524033	SHROOM2	Q13796	1616 aa		12.28	□□□□□ -0.44
SPIDR-223	ENST00000524033	KIAA0586	Q9BVV6	1533 aa		12.27	□□□□□ -0.44
SPIDR-223	ENST00000524033	FAM69C	Q0P6D2	419 aa		12.24	□□□□□ -0.45
SPIDR-223	ENST00000524033	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.24	□□□□□ -0.45
SPIDR-223	ENST00000524033	RUSC2	Q8N2Y8	1516 aa		12.21	□□□□□ -0.45
SPIDR-223	ENST00000524033	PTPRG	P23470	1445 aa		12.21	□□□□□ -0.45
SPIDR-223	ENST00000524033	CUL7	Q14999	1698 aa		12.19	□□□□□ -0.46
SPIDR-223	ENST00000524033	CARMIL2	Q6F5E8	1435 aa		12.19	□□□□□ -0.46
SPIDR-223	ENST00000524033	TNIK	Q9UKE5	1360 aa		12.17	□□□□□ -0.46
SPIDR-223	ENST00000524033	ABCC10	Q5T3U5	1492 aa		12.14	□□□□□ -0.47
SPIDR-223	ENST00000524033	FBXO3	Q9UK99	471 aa		12.14	□□□□□ -0.47
SPIDR-223	ENST00000524033	RAPGEF2	Q9Y4G8	1499 aa		12.14	□□□□□ -0.47
SPIDR-223	ENST00000524033	ADCY10	Q96PN6	1610 aa		12.11	□□□□□ -0.47
SPIDR-223	ENST00000524033	MAPKBP1	O60336	1514 aa		12.11	□□□□□ -0.47
SPIDR-223	ENST00000524033	ZNF692	Q9BU19	519 aa	Predicted RBP	12.09	□□□□□ -0.47
SPIDR-223	ENST00000524033	IQGAP2	Q13576	1575 aa		12.09	□□□□□ -0.47
SPIDR-223	ENST00000524033	UACA	Q9BZF9	1416 aa		12.08	□□□□□ -0.48
SPIDR-223	ENST00000524033	DISP1	Q96F81	1524 aa		12.07	□□□□□ -0.48
SPIDR-223	ENST00000524033	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.07	□□□□□ -0.48
SPIDR-223	ENST00000524033	ABCC2	Q92887	1545 aa		12.06	□□□□□ -0.48
SPIDR-223	ENST00000524033	ASXL2	Q76L83	1435 aa		12.05	□□□□□ -0.48
SPIDR-223	ENST00000524033	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.05	□□□□□ -0.48
SPIDR-223	ENST00000524033	UHRF1BP1L	A0JNW5	1464 aa		12.04	□□□□□ -0.48
SPIDR-223	ENST00000524033	PLB1	Q6P1J6	1458 aa		12.04	□□□□□ -0.48
SPIDR-223	ENST00000524033	UGGT2	Q9NYU1	1516 aa		12.03	□□□□□ -0.48
SPIDR-223	ENST00000524033	SPDYE2B	A6NHP3	402 aa		12.03	□□□□□ -0.48
SPIDR-223	ENST00000524033	SPDYE6	P0CI01	402 aa		12.03	□□□□□ -0.48
SPIDR-223	ENST00000524033	SPDYE2	Q495Y8	402 aa		12.03	□□□□□ -0.48
SPIDR-223	ENST00000524033	EEA1	Q15075	1411 aa		12.03	□□□□□ -0.48
SPIDR-223	ENST00000524033	DIP2B	Q9P265	1576 aa		12.02	□□□□□ -0.49
SPIDR-223	ENST00000524033	PRX	Q9BXM0	1461 aa		12.02	□□□□□ -0.49
SPIDR-223	ENST00000524033	KIF13A	Q9H1H9	1805 aa		12.01	□□□□□ -0.49
SPIDR-223	ENST00000524033	P3H3	Q8IVL6	736 aa		11.99	□□□□□ -0.49
SPIDR-223	ENST00000524033	GOLGA3	Q08378	1498 aa		11.99	□□□□□ -0.49
SPIDR-223	ENST00000524033	KDM5B	Q9UGL1	1544 aa		11.98	□□□□□ -0.49
SPIDR-223	ENST00000524033	PROM2	Q8N271	834 aa		11.98	□□□□□ -0.49
SPIDR-223	ENST00000524033	KCNH8	Q96L42	1107 aa		11.98	□□□□□ -0.49
SPIDR-223	ENST00000524033	CEP162	Q5TB80	1403 aa		11.97	□□□□□ -0.49
SPIDR-223	ENST00000524033	RTN4	Q9NQC3	1192 aa	Known RBP	11.96	□□□□□ -0.49
SPIDR-223	ENST00000524033	PELP1	Q8IZL8	1130 aa	Known RBP	11.95	□□□□□ -0.5
SPIDR-223	ENST00000524033	KIAA0556	O60303	1618 aa		11.95	□□□□□ -0.5
SPIDR-223	ENST00000524033	EPRS	P07814	1512 aa	Known RBP	11.95	□□□□□ -0.5
SPIDR-223	ENST00000524033	KIF21B	O75037	1637 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms