RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.76	■□□□□ 0.91
SPIDR-223	ENST00000524033	CHIC1	Q5VXU3	224 aa		20.62	■□□□□ 0.89
SPIDR-223	ENST00000524033	PHF23	Q9BUL5	403 aa	Predicted RBP	18.1	■□□□□ 0.49
SPIDR-223	ENST00000524033	SENP3	Q9H4L4	574 aa	Predicted RBP	17.69	■□□□□ 0.42
SPIDR-223	ENST00000524033	NISCH	Q9Y2I1	1504 aa		17.59	■□□□□ 0.41
SPIDR-223	ENST00000524033	PLPPR3	Q6T4P5	718 aa		16.95	■□□□□ 0.3
SPIDR-223	ENST00000524033	FOXD1	Q16676	465 aa		16.31	■□□□□ 0.2
SPIDR-223	ENST00000524033	ADRA2B	P18089	450 aa		15.97	■□□□□ 0.15
SPIDR-223	ENST00000524033	PPP6R1	Q9UPN7	881 aa		15.89	■□□□□ 0.13
SPIDR-223	ENST00000524033	ABCC9	O60706	1549 aa		15.74	■□□□□ 0.11
SPIDR-223	ENST00000524033	CCDC180	Q9P1Z9	1646 aa		15.61	■□□□□ 0.09
SPIDR-223	ENST00000524033	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.56	■□□□□ 0.08
SPIDR-223	ENST00000524033	DCAF8L2	P0C7V8	631 aa		15.03	■□□□□ -0
SPIDR-223	ENST00000524033	MSH5	O43196	834 aa		15.01	□□□□□ -0.01
SPIDR-223	ENST00000524033	PPP4R3CP	Q6ZMV5	832 aa		14.96	□□□□□ -0.01
SPIDR-223	ENST00000524033	RB1CC1	Q8TDY2	1594 aa		14.94	□□□□□ -0.02
SPIDR-223	ENST00000524033	KCNA4	P22459	653 aa		14.93	□□□□□ -0.02
SPIDR-223	ENST00000524033	NACAD	O15069	1562 aa		14.85	□□□□□ -0.03
SPIDR-223	ENST00000524033	DNAJC5B	Q9UF47	199 aa		14.81	□□□□□ -0.04
SPIDR-223	ENST00000524033	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.77	□□□□□ -0.05
SPIDR-223	ENST00000524033	NCBP3	Q53F19	620 aa	Known RBP	14.74	□□□□□ -0.05
SPIDR-223	ENST00000524033	SCAF1	Q9H7N4	1312 aa	Known RBP	14.72	□□□□□ -0.05
SPIDR-223	ENST00000524033	MYO15B	Q96JP2	1530 aa		14.67	□□□□□ -0.06
SPIDR-223	ENST00000524033	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.55	□□□□□ -0.08
SPIDR-223	ENST00000524033	DCAF1	Q9Y4B6	1507 aa		14.5	□□□□□ -0.09
SPIDR-223	ENST00000524033	CNKSR2	Q8WXI2	1034 aa		14.48	□□□□□ -0.09
SPIDR-223	ENST00000524033	BICRA	Q9NZM4	1560 aa		14.47	□□□□□ -0.09
SPIDR-223	ENST00000524033	UNC13A	Q9UPW8	1703 aa		14.41	□□□□□ -0.1
SPIDR-223	ENST00000524033	NPM3	O75607	178 aa	Known RBP	14.4	□□□□□ -0.1
SPIDR-223	ENST00000524033	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.39	□□□□□ -0.11
SPIDR-223	ENST00000524033	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.35	□□□□□ -0.11
SPIDR-223	ENST00000524033	EHMT2	Q96KQ7	1210 aa		14.34	□□□□□ -0.11
SPIDR-223	ENST00000524033	SCRIB	Q14160	1630 aa		14.31	□□□□□ -0.12
SPIDR-223	ENST00000524033	SHROOM4	Q9ULL8	1493 aa		14.31	□□□□□ -0.12
SPIDR-223	ENST00000524033	CECR2	Q9BXF3	1484 aa		14.18	□□□□□ -0.14
SPIDR-223	ENST00000524033	CC2D2A	Q9P2K1	1620 aa		14.15	□□□□□ -0.14
SPIDR-223	ENST00000524033	EIF4G1	Q04637	1599 aa	Known RBP	14.14	□□□□□ -0.15
SPIDR-223	ENST00000524033	DMRT2	Q9Y5R5	561 aa		14.11	□□□□□ -0.15
SPIDR-223	ENST00000524033	RNF216	Q9NWF9	866 aa	Predicted RBP	14.09	□□□□□ -0.15
SPIDR-223	ENST00000524033	HOXD11	P31277	338 aa	Predicted RBP	13.9	□□□□□ -0.18
SPIDR-223	ENST00000524033	CSRNP3	Q8WYN3	585 aa		13.87	□□□□□ -0.19
SPIDR-223	ENST00000524033	NCAPD3	P42695	1498 aa		13.78	□□□□□ -0.2
SPIDR-223	ENST00000524033	ATAD2B	Q9ULI0	1458 aa		13.73	□□□□□ -0.21
SPIDR-223	ENST00000524033	DCAF8L1	A6NGE4	600 aa		13.72	□□□□□ -0.21
SPIDR-223	ENST00000524033	FOXD4L1	Q9NU39	408 aa		13.69	□□□□□ -0.22
SPIDR-223	ENST00000524033	ZBTB22	O15209	634 aa		13.66	□□□□□ -0.22
SPIDR-223	ENST00000524033	SMARCA2	P51531	1590 aa		13.66	□□□□□ -0.22
SPIDR-223	ENST00000524033	SMARCA4	P51532	1647 aa		13.64	□□□□□ -0.23
SPIDR-223	ENST00000524033	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.62	□□□□□ -0.23
SPIDR-223	ENST00000524033	ERCC6	Q03468	1493 aa		13.61	□□□□□ -0.23
SPIDR-223	ENST00000524033	HMGXB3	Q12766	1538 aa		13.59	□□□□□ -0.23
SPIDR-223	ENST00000524033	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.59	□□□□□ -0.23
SPIDR-223	ENST00000524033	DNAJC5	Q9H3Z4	198 aa		13.58	□□□□□ -0.24
SPIDR-223	ENST00000524033	MROH2B	Q7Z745	1585 aa		13.55	□□□□□ -0.24
SPIDR-223	ENST00000524033	CUX2	O14529	1486 aa		13.52	□□□□□ -0.25
SPIDR-223	ENST00000524033	NES	P48681	1621 aa		13.52	□□□□□ -0.25
SPIDR-223	ENST00000524033	PEG3	Q9GZU2	1588 aa		13.51	□□□□□ -0.25
SPIDR-223	ENST00000524033	SLC4A2	P04920	1241 aa		13.47	□□□□□ -0.25
SPIDR-223	ENST00000524033	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.43	□□□□□ -0.26	3e-6	■■□□□ 14.5
SPIDR-223	ENST00000524033	PDS5B	Q9NTI5	1447 aa		13.41	□□□□□ -0.26
SPIDR-223	ENST00000524033	CADPS	Q9ULU8	1353 aa		13.41	□□□□□ -0.26
SPIDR-223	ENST00000524033	LAMC3	Q9Y6N6	1575 aa		13.38	□□□□□ -0.27
SPIDR-223	ENST00000524033	MYCN	P04198	464 aa	Predicted RBP	13.36	□□□□□ -0.27
SPIDR-223	ENST00000524033	RSF1	Q96T23	1441 aa	Predicted RBP	13.34	□□□□□ -0.27
SPIDR-223	ENST00000524033	WIZ	O95785	1651 aa		13.33	□□□□□ -0.28
SPIDR-223	ENST00000524033	THOC2	Q8NI27	1593 aa	Known RBP	13.26	□□□□□ -0.29
SPIDR-223	ENST00000524033	MRC2	Q9UBG0	1479 aa		13.23	□□□□□ -0.29
SPIDR-223	ENST00000524033	CFTR	P13569	1480 aa		13.22	□□□□□ -0.29
SPIDR-223	ENST00000524033	FANCD2	Q9BXW9	1451 aa		13.2	□□□□□ -0.3
SPIDR-223	ENST00000524033	KIF21A	Q7Z4S6	1674 aa		13.2	□□□□□ -0.3
SPIDR-223	ENST00000524033	CEP164	Q9UPV0	1460 aa		13.19	□□□□□ -0.3
SPIDR-223	ENST00000524033	TOP2A	P11388	1531 aa	Known RBP	13.18	□□□□□ -0.3
SPIDR-223	ENST00000524033	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.16	□□□□□ -0.3
SPIDR-223	ENST00000524033	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.16	□□□□□ -0.3
SPIDR-223	ENST00000524033	WDR62	O43379	1518 aa		13.15	□□□□□ -0.3
SPIDR-223	ENST00000524033	ATXN8OS	P0DMR3	200 aa		13.15	□□□□□ -0.3
SPIDR-223	ENST00000524033	SUPT5H	O00267	1087 aa	Known RBP	13.12	□□□□□ -0.31
SPIDR-223	ENST00000524033	CCDC88B	A6NC98	1476 aa		13.11	□□□□□ -0.31
SPIDR-223	ENST00000524033	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.11	□□□□□ -0.31
SPIDR-223	ENST00000524033		U3KPZ7	1027 aa	Predicted RBP	13.1	□□□□□ -0.31
SPIDR-223	ENST00000524033	POTED	Q86YR6	584 aa		13.08	□□□□□ -0.32
SPIDR-223	ENST00000524033	OSCAR	Q8IYS5	282 aa		13.06	□□□□□ -0.32
SPIDR-223	ENST00000524033	URB2	Q14146	1524 aa	Known RBP	13.06	□□□□□ -0.32
SPIDR-223	ENST00000524033	TRIM41	Q8WV44	630 aa		13.02	□□□□□ -0.33
SPIDR-223	ENST00000524033	APLP2	Q06481	763 aa		13	□□□□□ -0.33
SPIDR-223	ENST00000524033	IFT140	Q96RY7	1462 aa		12.94	□□□□□ -0.34
SPIDR-223	ENST00000524033	ABCC8	Q09428	1581 aa		12.94	□□□□□ -0.34
SPIDR-223	ENST00000524033	TOPBP1	Q92547	1522 aa		12.93	□□□□□ -0.34
SPIDR-223	ENST00000524033	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.92	□□□□□ -0.34
SPIDR-223	ENST00000524033	HRC	P23327	699 aa		12.91	□□□□□ -0.34
SPIDR-223	ENST00000524033	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.9	□□□□□ -0.34
SPIDR-223	ENST00000524033	AQR	O60306	1485 aa	Known RBP eCLIP	12.85	□□□□□ -0.35
SPIDR-223	ENST00000524033	FBLN2	P98095	1184 aa		12.85	□□□□□ -0.35
SPIDR-223	ENST00000524033	DNMBP	Q6XZF7	1577 aa		12.85	□□□□□ -0.35
SPIDR-223	ENST00000524033	SOGA1	O94964	1423 aa		12.83	□□□□□ -0.36
SPIDR-223	ENST00000524033	PRDM2	Q13029	1718 aa		12.82	□□□□□ -0.36
SPIDR-223	ENST00000524033	TDRD9	Q8NDG6	1382 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-223	ENST00000524033	POLA1	P09884	1462 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-223	ENST00000524033	RNF39	Q9H2S5	420 aa		12.81	□□□□□ -0.36
SPIDR-223	ENST00000524033	RAD54L2	Q9Y4B4	1467 aa		12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms