RNA–Protein interactions for RNA: ENST00000518265.5

SRGAP3-211, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5

Gene SRGAP3, Length 1,799 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-211ENST00000518265 WDR97A6NE52 1622 aa13.17□□□□□ -0.3
SRGAP3-211ENST00000518265 TARBP1Q13395 1621 aaKnown RBP13.15□□□□□ -0.3
SRGAP3-211ENST00000518265 CUX2O14529 1486 aa13.14□□□□□ -0.31
SRGAP3-211ENST00000518265 BCANQ96GW7 911 aa13.12□□□□□ -0.31
SRGAP3-211ENST00000518265 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
SRGAP3-211ENST00000518265 LOC105371045A0A1W2PR82 267 aa13.09□□□□□ -0.31
SRGAP3-211ENST00000518265 ZNF608Q9ULD9 1512 aaPredicted RBP13.09□□□□□ -0.31
SRGAP3-211ENST00000518265 TDRD9Q8NDG6 1382 aaKnown RBP13.09□□□□□ -0.31
SRGAP3-211ENST00000518265 PBRM1Q86U86 1689 aa13.08□□□□□ -0.31
SRGAP3-211ENST00000518265 ABCA10Q8WWZ4 1543 aa13.07□□□□□ -0.32
SRGAP3-211ENST00000518265 ABCA5Q8WWZ7 1642 aa13.06□□□□□ -0.32
SRGAP3-211ENST00000518265 AQRO60306 1485 aaKnown RBP eCLIP13.06□□□□□ -0.32
SRGAP3-211ENST00000518265 EIF4G3O43432 1585 aaKnown RBP13.05□□□□□ -0.32
SRGAP3-211ENST00000518265 KIF27Q86VH2 1401 aa13.03□□□□□ -0.32
SRGAP3-211ENST00000518265 IFT140Q96RY7 1462 aa13.03□□□□□ -0.32
SRGAP3-211ENST00000518265 GAPVD1Q14C86 1478 aa13□□□□□ -0.33
SRGAP3-211ENST00000518265 DAXXQ9UER7 740 aaPredicted RBP12.97□□□□□ -0.33
SRGAP3-211ENST00000518265 APLP2Q06481 763 aa12.97□□□□□ -0.33
SRGAP3-211ENST00000518265 IGF1RP08069 1367 aa12.96□□□□□ -0.33
SRGAP3-211ENST00000518265 EEA1Q15075 1411 aa12.96□□□□□ -0.34
SRGAP3-211ENST00000518265 RAPGEF2Q9Y4G8 1499 aa12.95□□□□□ -0.34
SRGAP3-211ENST00000518265 TPRNQ4KMQ1 711 aa12.94□□□□□ -0.34
SRGAP3-211ENST00000518265 KIF21BO75037 1637 aa12.93□□□□□ -0.34
SRGAP3-211ENST00000518265 CUL7Q14999 1698 aa12.92□□□□□ -0.34
SRGAP3-211ENST00000518265 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
SRGAP3-211ENST00000518265 SNAPC4Q5SXM2 1469 aa12.92□□□□□ -0.34
SRGAP3-211ENST00000518265 ERICH3Q5RHP9 1530 aa12.91□□□□□ -0.34
SRGAP3-211ENST00000518265 VSIG10Q8N0Z9 540 aa12.91□□□□□ -0.34
SRGAP3-211ENST00000518265 ADAMTS12P58397 1594 aa12.9□□□□□ -0.34
SRGAP3-211ENST00000518265 GRIN2BQ13224 1484 aa12.9□□□□□ -0.34
SRGAP3-211ENST00000518265 RANGAP1P46060 587 aaPredicted RBP12.9□□□□□ -0.34
SRGAP3-211ENST00000518265 PRXQ9BXM0 1461 aa12.9□□□□□ -0.34
SRGAP3-211ENST00000518265 CHD1O14646 1710 aa12.9□□□□□ -0.34
SRGAP3-211ENST00000518265 CARMIL1Q5VZK9 1371 aa12.9□□□□□ -0.35
SRGAP3-211ENST00000518265 UBTFP17480 764 aaKnown RBP12.89□□□□□ -0.35
SRGAP3-211ENST00000518265 GOLGA3Q08378 1498 aa12.88□□□□□ -0.35
SRGAP3-211ENST00000518265 VASPP50552 380 aaPredicted RBP12.87□□□□□ -0.35
SRGAP3-211ENST00000518265 KDM2AQ9Y2K7 1162 aa12.87□□□□□ -0.35
SRGAP3-211ENST00000518265 FBLN2P98095 1184 aa12.86□□□□□ -0.35
SRGAP3-211ENST00000518265 CTTNBP2Q8WZ74 1663 aa12.85□□□□□ -0.35
SRGAP3-211ENST00000518265 IFNLR1Q8IU57 520 aaPredicted RBP12.85□□□□□ -0.35
SRGAP3-211ENST00000518265 PKD2Q13563 968 aa12.84□□□□□ -0.35
SRGAP3-211ENST00000518265 ERICH6Q7L0X2 663 aa12.81□□□□□ -0.36
SRGAP3-211ENST00000518265 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
SRGAP3-211ENST00000518265 SPDYE4A6NLX3 237 aa12.81□□□□□ -0.36
SRGAP3-211ENST00000518265 MAGI1Q96QZ7 1491 aaPredicted RBP12.8□□□□□ -0.36
SRGAP3-211ENST00000518265 CHMP7Q8WUX9 453 aaPredicted RBP12.78□□□□□ -0.36
SRGAP3-211ENST00000518265 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
SRGAP3-211ENST00000518265 GRIN2AQ12879 1464 aa12.78□□□□□ -0.36
SRGAP3-211ENST00000518265 CEP170Q5SW79 1584 aa12.78□□□□□ -0.36
SRGAP3-211ENST00000518265 SAMD1Q6SPF0 538 aaPredicted RBP12.77□□□□□ -0.36
SRGAP3-211ENST00000518265 POTEDQ86YR6 584 aa12.77□□□□□ -0.36
SRGAP3-211ENST00000518265 TNIKQ9UKE5 1360 aa12.76□□□□□ -0.37
SRGAP3-211ENST00000518265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.75□□□□□ -0.37
SRGAP3-211ENST00000518265 U3KPZ7 1027 aaPredicted RBP12.75□□□□□ -0.37
SRGAP3-211ENST00000518265 CEP162Q5TB80 1403 aa12.74□□□□□ -0.37
SRGAP3-211ENST00000518265 PROM2Q8N271 834 aa12.73□□□□□ -0.37
SRGAP3-211ENST00000518265 ZNF219Q9P2Y4 722 aaPredicted RBP12.73□□□□□ -0.37
SRGAP3-211ENST00000518265 DCAF8L1A6NGE4 600 aa12.72□□□□□ -0.37
SRGAP3-211ENST00000518265 P3H3Q8IVL6 736 aa12.71□□□□□ -0.38
SRGAP3-211ENST00000518265 IQGAP2Q13576 1575 aa12.69□□□□□ -0.38
SRGAP3-211ENST00000518265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
SRGAP3-211ENST00000518265 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
SRGAP3-211ENST00000518265 MKRN4PQ13434 485 aaPredicted RBP12.69□□□□□ -0.38
SRGAP3-211ENST00000518265 CLIP1P30622 1438 aa12.67□□□□□ -0.38
SRGAP3-211ENST00000518265 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
SRGAP3-211ENST00000518265 PAXIP1Q6ZW49 1069 aaPredicted RBP12.66□□□□□ -0.38
SRGAP3-211ENST00000518265 NUP160Q12769 1436 aa12.65□□□□□ -0.38
SRGAP3-211ENST00000518265 ARHGAP35Q9NRY4 1499 aa12.65□□□□□ -0.38
SRGAP3-211ENST00000518265 ARAP1Q96P48 1450 aa12.63□□□□□ -0.39
SRGAP3-211ENST00000518265 CFAP44Q96MT7 982 aa12.63□□□□□ -0.39
SRGAP3-211ENST00000518265 KIAA0586Q9BVV6 1533 aa12.62□□□□□ -0.39
SRGAP3-211ENST00000518265 FHOD3Q2V2M9 1422 aa12.62□□□□□ -0.39
SRGAP3-211ENST00000518265 TIMELESSQ9UNS1 1208 aa12.62□□□□□ -0.39
SRGAP3-211ENST00000518265 SAMD9Q5K651 1589 aa12.61□□□□□ -0.39
SRGAP3-211ENST00000518265 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
SRGAP3-211ENST00000518265 BBXQ8WY36 941 aaPredicted RBP12.61□□□□□ -0.39
SRGAP3-211ENST00000518265 CLASP1Q7Z460 1538 aa12.6□□□□□ -0.39
SRGAP3-211ENST00000518265 PPARGC1BQ86YN6 1023 aaKnown RBP12.6□□□□□ -0.39
SRGAP3-211ENST00000518265 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.6□□□□□ -0.39
SRGAP3-211ENST00000518265 KIAA0556O60303 1618 aa12.59□□□□□ -0.39
SRGAP3-211ENST00000518265 DISP1Q96F81 1524 aa12.58□□□□□ -0.4
SRGAP3-211ENST00000518265 UGGT2Q9NYU1 1516 aa12.58□□□□□ -0.4
SRGAP3-211ENST00000518265 LRRIQ1Q96JM4 1722 aa12.57□□□□□ -0.4
SRGAP3-211ENST00000518265 JPH4Q96JJ6 628 aa12.57□□□□□ -0.4
SRGAP3-211ENST00000518265 SHROOM2Q13796 1616 aa12.57□□□□□ -0.4
SRGAP3-211ENST00000518265 EFCAB5A4FU69 1503 aa12.55□□□□□ -0.4
SRGAP3-211ENST00000518265 TSHZ2Q9NRE2 1034 aa12.55□□□□□ -0.4
SRGAP3-211ENST00000518265 PCF11O94913 1555 aaKnown RBP12.54□□□□□ -0.4
SRGAP3-211ENST00000518265 PRG4Q92954 1404 aaPredicted RBP12.54□□□□□ -0.4
SRGAP3-211ENST00000518265 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
SRGAP3-211ENST00000518265 ATP1B4Q9UN42 357 aaPredicted RBP12.53□□□□□ -0.4
SRGAP3-211ENST00000518265 TULP1O00294 542 aaPredicted RBP12.52□□□□□ -0.41
SRGAP3-211ENST00000518265 ARID3CA6NKF2 412 aa12.51□□□□□ -0.41
SRGAP3-211ENST00000518265 VPS8Q8N3P4 1428 aa12.51□□□□□ -0.41
SRGAP3-211ENST00000518265 ECM2O94769 699 aaPredicted RBP12.49□□□□□ -0.41
SRGAP3-211ENST00000518265 CARMIL2Q6F5E8 1435 aa12.47□□□□□ -0.41
SRGAP3-211ENST00000518265 RAPGEF6Q8TEU7 1601 aa12.45□□□□□ -0.42
SRGAP3-211ENST00000518265 PLB1Q6P1J6 1458 aa12.45□□□□□ -0.42
SRGAP3-211ENST00000518265 RGL2O15211 777 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms