RNA–Protein interactions for RNA: ENST00000518265.5

SRGAP3-211, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5

Gene SRGAP3, Length 1,799 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-211ENST00000518265 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
SRGAP3-211ENST00000518265 AEBP2Q6ZN18 517 aaPredicted RBP19.72■□□□□ 0.75
SRGAP3-211ENST00000518265 NISCHQ9Y2I1 1504 aa18.44■□□□□ 0.54
SRGAP3-211ENST00000518265 PHF23Q9BUL5 403 aaPredicted RBP17.95■□□□□ 0.46
SRGAP3-211ENST00000518265 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
SRGAP3-211ENST00000518265 SENP3Q9H4L4 574 aaPredicted RBP16.57■□□□□ 0.24
SRGAP3-211ENST00000518265 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
SRGAP3-211ENST00000518265 CCDC180Q9P1Z9 1646 aa16.2■□□□□ 0.18
SRGAP3-211ENST00000518265 KCNA4P22459 653 aa15.98■□□□□ 0.15
SRGAP3-211ENST00000518265 ADRA2BP18089 450 aa15.9■□□□□ 0.14
SRGAP3-211ENST00000518265 ABCC9O60706 1549 aa15.62■□□□□ 0.09
SRGAP3-211ENST00000518265 PPP6R1Q9UPN7 881 aa15.52■□□□□ 0.08
SRGAP3-211ENST00000518265 CSRNP3Q8WYN3 585 aa15.51■□□□□ 0.07
SRGAP3-211ENST00000518265 DCAF8L2P0C7V8 631 aa15.44■□□□□ 0.06
SRGAP3-211ENST00000518265 ZCCHC6Q5VYS8 1495 aaKnown RBP15.43■□□□□ 0.06
SRGAP3-211ENST00000518265 FOXD1Q16676 465 aa15.34■□□□□ 0.05
SRGAP3-211ENST00000518265 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
SRGAP3-211ENST00000518265 DCAF1Q9Y4B6 1507 aa15.13■□□□□ 0.01
SRGAP3-211ENST00000518265 NACADO15069 1562 aa15.08■□□□□ 0.01
SRGAP3-211ENST00000518265 SHROOM4Q9ULL8 1493 aa15.07■□□□□ 0
SRGAP3-211ENST00000518265 RB1CC1Q8TDY2 1594 aa15.05■□□□□ 0
SRGAP3-211ENST00000518265 MYO15BQ96JP2 1530 aa15□□□□□ -0.01
SRGAP3-211ENST00000518265 SCRIBQ14160 1630 aa14.99□□□□□ -0.01
SRGAP3-211ENST00000518265 UNC13AQ9UPW8 1703 aa14.97□□□□□ -0.01
SRGAP3-211ENST00000518265 PPP4R3CPQ6ZMV5 832 aa14.96□□□□□ -0.01
SRGAP3-211ENST00000518265 SLC24A1O60721 1099 aa14.93□□□□□ -0.02
SRGAP3-211ENST00000518265 ZBTB22O15209 634 aa14.79□□□□□ -0.04
SRGAP3-211ENST00000518265 NPM3O75607 178 aaKnown RBP14.72□□□□□ -0.05
SRGAP3-211ENST00000518265 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
SRGAP3-211ENST00000518265 RTN4Q9NQC3 1192 aaKnown RBP14.7□□□□□ -0.06
SRGAP3-211ENST00000518265 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
SRGAP3-211ENST00000518265 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
SRGAP3-211ENST00000518265 PIAS4Q8N2W9 510 aaPredicted RBP14.61□□□□□ -0.07
SRGAP3-211ENST00000518265 AMER1Q5JTC6 1135 aaPredicted RBP14.45□□□□□ -0.1
SRGAP3-211ENST00000518265 CECR2Q9BXF3 1484 aa14.43□□□□□ -0.1
SRGAP3-211ENST00000518265 SUPT5HO00267 1087 aaKnown RBP14.33□□□□□ -0.12
SRGAP3-211ENST00000518265 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
SRGAP3-211ENST00000518265 SMARCA4P51532 1647 aa14.28□□□□□ -0.12
SRGAP3-211ENST00000518265 WIZO95785 1651 aa14.26□□□□□ -0.13
SRGAP3-211ENST00000518265 BAZ1AQ9NRL2 1556 aaPredicted RBP14.23□□□□□ -0.13
SRGAP3-211ENST00000518265 FOXD4L1Q9NU39 408 aa14.23□□□□□ -0.13
SRGAP3-211ENST00000518265 EIF4G1Q04637 1599 aaKnown RBP14.23□□□□□ -0.13
SRGAP3-211ENST00000518265 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
SRGAP3-211ENST00000518265 CNKSR2Q8WXI2 1034 aa14.22□□□□□ -0.13
SRGAP3-211ENST00000518265 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
SRGAP3-211ENST00000518265 ATAD2BQ9ULI0 1458 aa14.04□□□□□ -0.16
SRGAP3-211ENST00000518265 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
SRGAP3-211ENST00000518265 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
SRGAP3-211ENST00000518265 SMARCA2P51531 1590 aa14□□□□□ -0.17
SRGAP3-211ENST00000518265 TOP2AP11388 1531 aaKnown RBP13.97□□□□□ -0.17
SRGAP3-211ENST00000518265 BAZ1BQ9UIG0 1483 aaKnown RBP13.96□□□□□ -0.17
SRGAP3-211ENST00000518265 SCAF1Q9H7N4 1312 aaKnown RBP13.93□□□□□ -0.18
SRGAP3-211ENST00000518265 FKBP8Q14318 412 aa13.92□□□□□ -0.18
SRGAP3-211ENST00000518265 NCAPD3P42695 1498 aa13.9□□□□□ -0.18
SRGAP3-211ENST00000518265 HMGXB3Q12766 1538 aa13.89□□□□□ -0.19
SRGAP3-211ENST00000518265 CCDC88BA6NC98 1476 aa13.85□□□□□ -0.19
SRGAP3-211ENST00000518265 MSH5O43196 834 aa13.84□□□□□ -0.19
SRGAP3-211ENST00000518265 MAPK8IP2Q13387 824 aaPredicted RBP13.83□□□□□ -0.2
SRGAP3-211ENST00000518265 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
SRGAP3-211ENST00000518265 RNF216Q9NWF9 866 aaPredicted RBP13.67□□□□□ -0.22
SRGAP3-211ENST00000518265 NESP48681 1621 aa13.67□□□□□ -0.22
SRGAP3-211ENST00000518265 PRDM2Q13029 1718 aa13.64□□□□□ -0.23
SRGAP3-211ENST00000518265 ABCC8Q09428 1581 aa13.6□□□□□ -0.23
SRGAP3-211ENST00000518265 KIF21AQ7Z4S6 1674 aa13.56□□□□□ -0.24
SRGAP3-211ENST00000518265 CFTRP13569 1480 aa13.55□□□□□ -0.24
SRGAP3-211ENST00000518265 CADPSQ9ULU8 1353 aa13.55□□□□□ -0.24
SRGAP3-211ENST00000518265 MYT1Q01538 1121 aa13.54□□□□□ -0.24
SRGAP3-211ENST00000518265 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
SRGAP3-211ENST00000518265 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
SRGAP3-211ENST00000518265 FANCD2Q9BXW9 1451 aa13.46□□□□□ -0.26
SRGAP3-211ENST00000518265 MYCNP04198 464 aaPredicted RBP13.45□□□□□ -0.26
SRGAP3-211ENST00000518265 SYNJ1O43426 1573 aa13.44□□□□□ -0.26
SRGAP3-211ENST00000518265 PELP1Q8IZL8 1130 aaKnown RBP13.43□□□□□ -0.26
SRGAP3-211ENST00000518265 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
SRGAP3-211ENST00000518265 CEP164Q9UPV0 1460 aa13.39□□□□□ -0.27
SRGAP3-211ENST00000518265 CUX1P39880 1505 aa13.39□□□□□ -0.27
SRGAP3-211ENST00000518265 WRNQ14191 1432 aaPredicted RBP eCLIP13.38□□□□□ -0.27
SRGAP3-211ENST00000518265 PDS5BQ9NTI5 1447 aa13.37□□□□□ -0.27
SRGAP3-211ENST00000518265 PRKCSHP14314 528 aaPredicted RBP13.37□□□□□ -0.27
SRGAP3-211ENST00000518265 PLCB2Q00722 1185 aa13.37□□□□□ -0.27
SRGAP3-211ENST00000518265 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
SRGAP3-211ENST00000518265 TTBK1Q5TCY1 1321 aaPredicted RBP13.36□□□□□ -0.27
SRGAP3-211ENST00000518265 HOXD11P31277 338 aaPredicted RBP13.35□□□□□ -0.27
SRGAP3-211ENST00000518265 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
SRGAP3-211ENST00000518265 DMRT2Q9Y5R5 561 aa13.35□□□□□ -0.27
SRGAP3-211ENST00000518265 URB2Q14146 1524 aaKnown RBP13.34□□□□□ -0.27
SRGAP3-211ENST00000518265 TOP2BQ02880 1626 aa13.33□□□□□ -0.27
SRGAP3-211ENST00000518265 THOC2Q8NI27 1593 aaKnown RBP13.3□□□□□ -0.28
SRGAP3-211ENST00000518265 TOPBP1Q92547 1522 aa13.3□□□□□ -0.28
SRGAP3-211ENST00000518265 DNMBPQ6XZF7 1577 aa13.29□□□□□ -0.28
SRGAP3-211ENST00000518265 FAM9AQ8IZU1 332 aaPredicted RBP13.28□□□□□ -0.28
SRGAP3-211ENST00000518265 FGD5Q6ZNL6 1462 aa13.26□□□□□ -0.29
SRGAP3-211ENST00000518265 MRC2Q9UBG0 1479 aa13.26□□□□□ -0.29
SRGAP3-211ENST00000518265 ATF5Q9Y2D1 282 aaPredicted RBP13.26□□□□□ -0.29
SRGAP3-211ENST00000518265 RUSC2Q8N2Y8 1516 aa13.24□□□□□ -0.29
SRGAP3-211ENST00000518265 RAD54L2Q9Y4B4 1467 aa13.23□□□□□ -0.29
SRGAP3-211ENST00000518265 SOGA1O94964 1423 aa13.22□□□□□ -0.29
SRGAP3-211ENST00000518265 HAP1P54257 671 aaPredicted RBP13.22□□□□□ -0.29
SRGAP3-211ENST00000518265 POLA1P09884 1462 aaPredicted RBP13.21□□□□□ -0.29
SRGAP3-211ENST00000518265 WDR62O43379 1518 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms