RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PHLDB1Q86UU1 1377 aa13.25□□□□□ -0.29
LIMCH1-215ENST00000512632 BCANQ96GW7 911 aa13.25□□□□□ -0.29
LIMCH1-215ENST00000512632 SETD5Q9C0A6 1442 aa13.24□□□□□ -0.29
LIMCH1-215ENST00000512632 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
LIMCH1-215ENST00000512632 MAPKBP1O60336 1514 aa13.2□□□□□ -0.3
LIMCH1-215ENST00000512632 LRRC9Q6ZRR7 1453 aa13.2□□□□□ -0.3
LIMCH1-215ENST00000512632 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
LIMCH1-215ENST00000512632 TIAM1Q13009 1591 aa13.18□□□□□ -0.3
LIMCH1-215ENST00000512632 TSHZ2Q9NRE2 1034 aa13.18□□□□□ -0.3
LIMCH1-215ENST00000512632 FKBP8Q14318 412 aa13.16□□□□□ -0.3
LIMCH1-215ENST00000512632 FHOD3Q2V2M9 1422 aa13.16□□□□□ -0.3
LIMCH1-215ENST00000512632 WDR97A6NE52 1622 aa13.15□□□□□ -0.3
LIMCH1-215ENST00000512632 TRIM52Q96A61 297 aa13.15□□□□□ -0.3
LIMCH1-215ENST00000512632 FHAD1B1AJZ9 1412 aa13.14□□□□□ -0.31
LIMCH1-215ENST00000512632 PPP1R15AO75807 674 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-215ENST00000512632 RAD54L2Q9Y4B4 1467 aa13.11□□□□□ -0.31
LIMCH1-215ENST00000512632 MAP3K1Q13233 1512 aa13.1□□□□□ -0.31
LIMCH1-215ENST00000512632 ANP32CO43423 234 aa13.1□□□□□ -0.31
LIMCH1-215ENST00000512632 TIMELESSQ9UNS1 1208 aa13.08□□□□□ -0.32
LIMCH1-215ENST00000512632 TONSLQ96HA7 1378 aa13.07□□□□□ -0.32
LIMCH1-215ENST00000512632 PCF11O94913 1555 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-215ENST00000512632 FANCD2Q9BXW9 1451 aa13.06□□□□□ -0.32
LIMCH1-215ENST00000512632 NEFLP07196 543 aa13.06□□□□□ -0.32
LIMCH1-215ENST00000512632 MTUS2Q5JR59 1369 aa13.05□□□□□ -0.32
LIMCH1-215ENST00000512632 CHIC2Q9UKJ5 165 aa13.02□□□□□ -0.32
LIMCH1-215ENST00000512632 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
LIMCH1-215ENST00000512632 CCER2I3L3R5 266 aa13.01□□□□□ -0.33
LIMCH1-215ENST00000512632 RRP7BPQ9NSQ0 103 aa13.01□□□□□ -0.33
LIMCH1-215ENST00000512632 TDRD9Q8NDG6 1382 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-215ENST00000512632 FGD6Q6ZV73 1430 aa13□□□□□ -0.33
LIMCH1-215ENST00000512632 PTPRKQ15262 1439 aa13□□□□□ -0.33
LIMCH1-215ENST00000512632 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-215ENST00000512632 NESP48681 1621 aa12.99□□□□□ -0.33
LIMCH1-215ENST00000512632 ARID3CA6NKF2 412 aa12.99□□□□□ -0.33
LIMCH1-215ENST00000512632 FYCO1Q9BQS8 1478 aa12.99□□□□□ -0.33
LIMCH1-215ENST00000512632 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
LIMCH1-215ENST00000512632 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
LIMCH1-215ENST00000512632 TOPBP1Q92547 1522 aa12.96□□□□□ -0.33
LIMCH1-215ENST00000512632 HNRNPUQ00839 825 aaKnown RBP eCLIP12.96□□□□□ -0.34
LIMCH1-215ENST00000512632 ANP32EQ9BTT0 268 aa12.96□□□□□ -0.34
LIMCH1-215ENST00000512632 ABCA10Q8WWZ4 1543 aa12.96□□□□□ -0.34
LIMCH1-215ENST00000512632 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.96□□□□□ -0.34
LIMCH1-215ENST00000512632 CFAP43Q8NDM7 1665 aa12.95□□□□□ -0.34
LIMCH1-215ENST00000512632 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-215ENST00000512632 PRDM2Q13029 1718 aa12.93□□□□□ -0.34
LIMCH1-215ENST00000512632 CC2D2AQ9P2K1 1620 aa12.93□□□□□ -0.34
LIMCH1-215ENST00000512632 UACAQ9BZF9 1416 aa12.93□□□□□ -0.34
LIMCH1-215ENST00000512632 RBM19Q9Y4C8 960 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-215ENST00000512632 AQRO60306 1485 aaKnown RBP eCLIP12.93□□□□□ -0.34
LIMCH1-215ENST00000512632 HFM1A2PYH4 1435 aa12.92□□□□□ -0.34
LIMCH1-215ENST00000512632 NAIPQ13075 1403 aa12.92□□□□□ -0.34
LIMCH1-215ENST00000512632 EFCAB5A4FU69 1503 aa12.92□□□□□ -0.34
LIMCH1-215ENST00000512632 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
LIMCH1-215ENST00000512632 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-215ENST00000512632 FOXD1Q16676 465 aa12.91□□□□□ -0.34
LIMCH1-215ENST00000512632 NCOA2Q15596 1464 aa12.91□□□□□ -0.34
LIMCH1-215ENST00000512632 SNAPC4Q5SXM2 1469 aa12.89□□□□□ -0.35
LIMCH1-215ENST00000512632 MYOM3Q5VTT5 1437 aa12.89□□□□□ -0.35
LIMCH1-215ENST00000512632 DNAJC5BQ9UF47 199 aa12.89□□□□□ -0.35
LIMCH1-215ENST00000512632 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
LIMCH1-215ENST00000512632 CCDC184Q52MB2 194 aa12.86□□□□□ -0.35
LIMCH1-215ENST00000512632 EIF4G2P78344 907 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIMCH1-215ENST00000512632 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-215ENST00000512632 L3MBTL2Q969R5 705 aa12.85□□□□□ -0.35
LIMCH1-215ENST00000512632 PTPN23Q9H3S7 1636 aa12.85□□□□□ -0.35
LIMCH1-215ENST00000512632 GAPVD1Q14C86 1478 aa12.84□□□□□ -0.35
LIMCH1-215ENST00000512632 MPHOSPH9Q99550 1183 aa12.84□□□□□ -0.35
LIMCH1-215ENST00000512632 URB2Q14146 1524 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-215ENST00000512632 FAM9BQ8IZU0 186 aa12.84□□□□□ -0.35
LIMCH1-215ENST00000512632 C11orf95C9JLR9 678 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-215ENST00000512632 CUL7Q14999 1698 aa12.82□□□□□ -0.36
LIMCH1-215ENST00000512632 GRIN2BQ13224 1484 aa12.82□□□□□ -0.36
LIMCH1-215ENST00000512632 CTTNBP2Q8WZ74 1663 aa12.8□□□□□ -0.36
LIMCH1-215ENST00000512632 MRS2Q9HD23 443 aa12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 MAGI3Q5TCQ9 1506 aa12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 KDM5BQ9UGL1 1544 aa12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 NBPF8Q3BBV2 869 aa12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 POLR3GLQ9BT43 218 aa12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 CDK11AQ9UQ88 783 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-215ENST00000512632 ZNF644Q9H582 1327 aaPredicted RBP12.77□□□□□ -0.37
LIMCH1-215ENST00000512632 PRKRIP1Q9H875 184 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-215ENST00000512632 DENND4BO75064 1496 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-215ENST00000512632 EHBP1L1Q8N3D4 1523 aa12.76□□□□□ -0.37
LIMCH1-215ENST00000512632 SLC4A1APQ9BWU0 796 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-215ENST00000512632 SUPT6HQ7KZ85 1726 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-215ENST00000512632 SAMD9Q5K651 1589 aa12.75□□□□□ -0.37
LIMCH1-215ENST00000512632 MSH5O43196 834 aa12.75□□□□□ -0.37
LIMCH1-215ENST00000512632 SENP3-EIF4A1A0A087X0R7 540 aa12.75□□□□□ -0.37
LIMCH1-215ENST00000512632 UGGT2Q9NYU1 1516 aa12.75□□□□□ -0.37
LIMCH1-215ENST00000512632 LRRIQ1Q96JM4 1722 aa12.74□□□□□ -0.37
LIMCH1-215ENST00000512632 ZNF326Q5BKZ1 582 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-215ENST00000512632 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
LIMCH1-215ENST00000512632 CDK13Q14004 1512 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-215ENST00000512632 KDM6BO15054 1643 aa12.73□□□□□ -0.37
LIMCH1-215ENST00000512632 CCDC7Q96M83 1385 aa12.73□□□□□ -0.37
LIMCH1-215ENST00000512632 B4GALNT3Q6L9W6 998 aa12.73□□□□□ -0.37
LIMCH1-215ENST00000512632 CNTLNQ9NXG0 1405 aa12.71□□□□□ -0.37
LIMCH1-215ENST00000512632 EPRSP07814 1512 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-215ENST00000512632 ABCA5Q8WWZ7 1642 aa12.7□□□□□ -0.38
LIMCH1-215ENST00000512632 PPP4R2Q9NY27 417 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms