RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NISCHQ9Y2I1 1504 aa18.5■□□□□ 0.55
LIMCH1-215ENST00000512632 SHROOM4Q9ULL8 1493 aa16.24■□□□□ 0.19
LIMCH1-215ENST00000512632 SUPT5HO00267 1087 aaKnown RBP16.04■□□□□ 0.16
LIMCH1-215ENST00000512632 DCAF8L2P0C7V8 631 aa15.76■□□□□ 0.11
LIMCH1-215ENST00000512632 ZCCHC6Q5VYS8 1495 aaKnown RBP15.63■□□□□ 0.09
LIMCH1-215ENST00000512632 CHIC1Q5VXU3 224 aa15.54■□□□□ 0.08
LIMCH1-215ENST00000512632 MYO15BQ96JP2 1530 aa15.44■□□□□ 0.06
LIMCH1-215ENST00000512632 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
LIMCH1-215ENST00000512632 PCGF6Q9BYE7 350 aa15.34■□□□□ 0.05
LIMCH1-215ENST00000512632 HRCP23327 699 aa15.32■□□□□ 0.04
LIMCH1-215ENST00000512632 LOC105371045A0A1W2PR82 267 aa15.21■□□□□ 0.03
LIMCH1-215ENST00000512632 PPARGC1BQ86YN6 1023 aaKnown RBP15.13■□□□□ 0.01
LIMCH1-215ENST00000512632 DCAF1Q9Y4B6 1507 aa15.02□□□□□ -0.01
LIMCH1-215ENST00000512632 TRIM26Q12899 539 aaPredicted RBP14.87□□□□□ -0.03
LIMCH1-215ENST00000512632 FAM9AQ8IZU1 332 aaPredicted RBP14.87□□□□□ -0.03
LIMCH1-215ENST00000512632 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
LIMCH1-215ENST00000512632 TRIM41Q8WV44 630 aa14.84□□□□□ -0.03
LIMCH1-215ENST00000512632 RSF1Q96T23 1441 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-215ENST00000512632 SCRIBQ14160 1630 aa14.75□□□□□ -0.05
LIMCH1-215ENST00000512632 ABCC9O60706 1549 aa14.73□□□□□ -0.05
LIMCH1-215ENST00000512632 RB1CC1Q8TDY2 1594 aa14.61□□□□□ -0.07
LIMCH1-215ENST00000512632 ZEB1P37275 1124 aaPredicted RBP14.56□□□□□ -0.08
LIMCH1-215ENST00000512632 CECR2Q9BXF3 1484 aa14.55□□□□□ -0.08
LIMCH1-215ENST00000512632 MROH2BQ7Z745 1585 aa14.45□□□□□ -0.1
LIMCH1-215ENST00000512632 TTBK1Q5TCY1 1321 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-215ENST00000512632 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-215ENST00000512632 NACADO15069 1562 aa14.35□□□□□ -0.11
LIMCH1-215ENST00000512632 WIZO95785 1651 aa14.35□□□□□ -0.11
LIMCH1-215ENST00000512632 CCER1Q8TC90 406 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-215ENST00000512632 SCAF1Q9H7N4 1312 aaKnown RBP14.27□□□□□ -0.13
LIMCH1-215ENST00000512632 CCDC88BA6NC98 1476 aa14.17□□□□□ -0.14
LIMCH1-215ENST00000512632 ABCC8Q09428 1581 aa14.16□□□□□ -0.14
LIMCH1-215ENST00000512632 UBTFP17480 764 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-215ENST00000512632 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-215ENST00000512632 SOGA1O94964 1423 aa14.12□□□□□ -0.15
LIMCH1-215ENST00000512632 CSRNP3Q8WYN3 585 aa14.1□□□□□ -0.15
LIMCH1-215ENST00000512632 DIEXFQ68CQ4 756 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-215ENST00000512632 PABPN1Q86U42 306 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIMCH1-215ENST00000512632 CEP162Q5TB80 1403 aa14.09□□□□□ -0.15
LIMCH1-215ENST00000512632 NEUROD1Q13562 356 aa14.07□□□□□ -0.16
LIMCH1-215ENST00000512632 EIF4G1Q04637 1599 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-215ENST00000512632 RUSC2Q8N2Y8 1516 aa14.05□□□□□ -0.16
LIMCH1-215ENST00000512632 ACIN1Q9UKV3 1341 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-215ENST00000512632 TOP2AP11388 1531 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-215ENST00000512632 TNIKQ9UKE5 1360 aa14.02□□□□□ -0.17
LIMCH1-215ENST00000512632 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
LIMCH1-215ENST00000512632 WRNQ14191 1432 aaPredicted RBP eCLIP14□□□□□ -0.17
LIMCH1-215ENST00000512632 SMARCA2P51531 1590 aa14□□□□□ -0.17
LIMCH1-215ENST00000512632 SMARCA4P51532 1647 aa14□□□□□ -0.17
LIMCH1-215ENST00000512632 RANGAP1P46060 587 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-215ENST00000512632 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
LIMCH1-215ENST00000512632 GTF3C3Q9Y5Q9 886 aa13.96□□□□□ -0.17
LIMCH1-215ENST00000512632 CENPBP07199 599 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-215ENST00000512632 EEA1Q15075 1411 aa13.91□□□□□ -0.18
LIMCH1-215ENST00000512632 ZNF316A6NFI3 1004 aaPredicted RBP13.91□□□□□ -0.18
LIMCH1-215ENST00000512632 YTHDC1Q96MU7 727 aaKnown RBP13.9□□□□□ -0.19
LIMCH1-215ENST00000512632 GOLGA3Q08378 1498 aa13.89□□□□□ -0.19
LIMCH1-215ENST00000512632 APLP2Q06481 763 aa13.85□□□□□ -0.19
LIMCH1-215ENST00000512632 CLIP1P30622 1438 aa13.81□□□□□ -0.2
LIMCH1-215ENST00000512632 UNC13AQ9UPW8 1703 aa13.81□□□□□ -0.2
LIMCH1-215ENST00000512632 MIER1Q8N108 512 aa13.79□□□□□ -0.2
LIMCH1-215ENST00000512632 CEP164Q9UPV0 1460 aa13.78□□□□□ -0.2
LIMCH1-215ENST00000512632 SYNJ1O43426 1573 aa13.75□□□□□ -0.21
LIMCH1-215ENST00000512632 BICRAQ9NZM4 1560 aa13.74□□□□□ -0.21
LIMCH1-215ENST00000512632 RAPGEF2Q9Y4G8 1499 aa13.73□□□□□ -0.21
LIMCH1-215ENST00000512632 VPS8Q8N3P4 1428 aa13.72□□□□□ -0.21
LIMCH1-215ENST00000512632 ATAD2BQ9ULI0 1458 aa13.7□□□□□ -0.22
LIMCH1-215ENST00000512632 BAZ1BQ9UIG0 1483 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-215ENST00000512632 KIF21BO75037 1637 aa13.64□□□□□ -0.23
LIMCH1-215ENST00000512632 KANK4Q5T7N3 995 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-215ENST00000512632 PEG3Q9GZU2 1588 aa13.63□□□□□ -0.23
LIMCH1-215ENST00000512632 ITGAEP38570 1179 aa13.6□□□□□ -0.23
LIMCH1-215ENST00000512632 DHX57Q6P158 1386 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-215ENST00000512632 TOP2BQ02880 1626 aa13.49□□□□□ -0.25
LIMCH1-215ENST00000512632 PRXQ9BXM0 1461 aa13.49□□□□□ -0.25
LIMCH1-215ENST00000512632 ARAP1Q96P48 1450 aa13.49□□□□□ -0.25
LIMCH1-215ENST00000512632 CLSPNQ9HAW4 1339 aa13.47□□□□□ -0.25
LIMCH1-215ENST00000512632 KIF27Q86VH2 1401 aa13.45□□□□□ -0.26
LIMCH1-215ENST00000512632 CCNB3Q8WWL7 1395 aa13.41□□□□□ -0.26
LIMCH1-215ENST00000512632 CUX1P39880 1505 aa13.41□□□□□ -0.26
LIMCH1-215ENST00000512632 ATP1B4Q9UN42 357 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-215ENST00000512632 ERICH3Q5RHP9 1530 aa13.41□□□□□ -0.26
LIMCH1-215ENST00000512632 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
LIMCH1-215ENST00000512632 RRBP1Q9P2E9 1410 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-215ENST00000512632 BIVM-ERCC5R4GMW8 1640 aa13.37□□□□□ -0.27
LIMCH1-215ENST00000512632 ARHGAP35Q9NRY4 1499 aa13.37□□□□□ -0.27
LIMCH1-215ENST00000512632 KCNH8Q96L42 1107 aa13.37□□□□□ -0.27
LIMCH1-215ENST00000512632 FAM50AQ14320 339 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-215ENST00000512632 NCAPD3P42695 1498 aa13.36□□□□□ -0.27
LIMCH1-215ENST00000512632 SUPT16HQ9Y5B9 1047 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-215ENST00000512632 RAB3GAP2Q9H2M9 1393 aa13.34□□□□□ -0.27
LIMCH1-215ENST00000512632 SIN3AQ96ST3 1273 aa13.33□□□□□ -0.27
LIMCH1-215ENST00000512632 IGF1RP08069 1367 aa13.33□□□□□ -0.28
LIMCH1-215ENST00000512632 CUX2O14529 1486 aa13.33□□□□□ -0.28
LIMCH1-215ENST00000512632 CFTRP13569 1480 aa13.31□□□□□ -0.28
LIMCH1-215ENST00000512632 DDX10Q13206 875 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-215ENST00000512632 HIRIP3Q9BW71 556 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-215ENST00000512632 CARMIL1Q5VZK9 1371 aa13.29□□□□□ -0.28
LIMCH1-215ENST00000512632 MYT1Q01538 1121 aa13.28□□□□□ -0.28
LIMCH1-215ENST00000512632 HMGXB3Q12766 1538 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms