RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 ZNF608Q9ULD9 1512 aaPredicted RBP22.92■■□□□ 1.26
SCLT1-208ENST00000506368 IFT140Q96RY7 1462 aa22.91■■□□□ 1.26
SCLT1-208ENST00000506368 BCL11AQ9H165 835 aa22.91■■□□□ 1.26
SCLT1-208ENST00000506368 DHX57Q6P158 1386 aaKnown RBP22.91■■□□□ 1.26
SCLT1-208ENST00000506368 TDRD9Q8NDG6 1382 aaKnown RBP22.86■■□□□ 1.25
SCLT1-208ENST00000506368 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
SCLT1-208ENST00000506368 AQRO60306 1485 aaKnown RBP eCLIP22.84■■□□□ 1.25
SCLT1-208ENST00000506368 ABCA10Q8WWZ4 1543 aa22.81■■□□□ 1.24
SCLT1-208ENST00000506368 EIF4G3O43432 1585 aaKnown RBP22.8■■□□□ 1.24
SCLT1-208ENST00000506368 ABCA5Q8WWZ7 1642 aa22.72■■□□□ 1.23
SCLT1-208ENST00000506368 RRBP1Q9P2E9 1410 aaKnown RBP22.72■■□□□ 1.23
SCLT1-208ENST00000506368 GAPVD1Q14C86 1478 aa22.71■■□□□ 1.23
SCLT1-208ENST00000506368 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
SCLT1-208ENST00000506368 PBRM1Q86U86 1689 aa22.67■■□□□ 1.22
SCLT1-208ENST00000506368 RAPGEF2Q9Y4G8 1499 aa22.65■■□□□ 1.22
SCLT1-208ENST00000506368 KIF27Q86VH2 1401 aa22.64■■□□□ 1.21
SCLT1-208ENST00000506368 GRIN2BQ13224 1484 aa22.61■■□□□ 1.21
SCLT1-208ENST00000506368 SNAPC4Q5SXM2 1469 aa22.59■■□□□ 1.21
SCLT1-208ENST00000506368 NEFLP07196 543 aa22.59■■□□□ 1.21
SCLT1-208ENST00000506368 IGF1RP08069 1367 aa22.55■■□□□ 1.2
SCLT1-208ENST00000506368 RBM19Q9Y4C8 960 aaKnown RBP22.54■■□□□ 1.2
SCLT1-208ENST00000506368 ARAP1Q96P48 1450 aa22.52■■□□□ 1.2
SCLT1-208ENST00000506368 FKBP8Q14318 412 aa22.52■■□□□ 1.2
SCLT1-208ENST00000506368 FBLN2P98095 1184 aa22.51■■□□□ 1.19
SCLT1-208ENST00000506368 MYT1LQ9UL68 1186 aa22.51■■□□□ 1.19
SCLT1-208ENST00000506368 CCER2I3L3R5 266 aa22.5■■□□□ 1.19
SCLT1-208ENST00000506368 CCNB3Q8WWL7 1395 aa22.48■■□□□ 1.19
SCLT1-208ENST00000506368 TIMELESSQ9UNS1 1208 aa22.48■■□□□ 1.19
SCLT1-208ENST00000506368 ADAMTS12P58397 1594 aa22.48■■□□□ 1.19
SCLT1-208ENST00000506368 MAGI1Q96QZ7 1491 aaPredicted RBP22.48■■□□□ 1.19
SCLT1-208ENST00000506368 CHD1O14646 1710 aa22.48■■□□□ 1.19
SCLT1-208ENST00000506368 PRXQ9BXM0 1461 aa22.47■■□□□ 1.19
SCLT1-208ENST00000506368 CHMP7Q8WUX9 453 aaPredicted RBP22.43■■□□□ 1.18
SCLT1-208ENST00000506368 FANCIQ9NVI1 1328 aa22.43■■□□□ 1.18
SCLT1-208ENST00000506368 SYNJ2O15056 1496 aa22.42■■□□□ 1.18
SCLT1-208ENST00000506368 MAPKBP1O60336 1514 aa22.42■■□□□ 1.18
SCLT1-208ENST00000506368 CARMIL1Q5VZK9 1371 aa22.41■■□□□ 1.18
SCLT1-208ENST00000506368 FHAD1B1AJZ9 1412 aa22.41■■□□□ 1.18
SCLT1-208ENST00000506368 CUL7Q14999 1698 aa22.4■■□□□ 1.18
SCLT1-208ENST00000506368 MAP3K1Q13233 1512 aa22.4■■□□□ 1.18
SCLT1-208ENST00000506368 BCANQ96GW7 911 aa22.37■■□□□ 1.17
SCLT1-208ENST00000506368 GRIN2AQ12879 1464 aa22.36■■□□□ 1.17
SCLT1-208ENST00000506368 KANK4Q5T7N3 995 aaPredicted RBP22.34■■□□□ 1.17
SCLT1-208ENST00000506368 KCNH8Q96L42 1107 aa22.33■■□□□ 1.17
SCLT1-208ENST00000506368 RAB3GAP2Q9H2M9 1393 aa22.32■■□□□ 1.16
SCLT1-208ENST00000506368 PPP1R15AO75807 674 aaPredicted RBP22.32■■□□□ 1.16
SCLT1-208ENST00000506368 ERICH6BQ5W0A0 696 aa22.3■■□□□ 1.16
SCLT1-208ENST00000506368 SETD5Q9C0A6 1442 aa22.29■■□□□ 1.16
SCLT1-208ENST00000506368 CEP170Q5SW79 1584 aa22.27■■□□□ 1.16
SCLT1-208ENST00000506368 ANP32CO43423 234 aa22.27■■□□□ 1.16
SCLT1-208ENST00000506368 OSCARQ8IYS5 282 aa22.27■■□□□ 1.16
SCLT1-208ENST00000506368 DDX10Q13206 875 aaKnown RBP22.24■■□□□ 1.15
SCLT1-208ENST00000506368 ERICH6Q7L0X2 663 aa22.22■■□□□ 1.15
SCLT1-208ENST00000506368 CDK11AQ9UQ88 783 aaPredicted RBP22.21■■□□□ 1.15
SCLT1-208ENST00000506368 NUP160Q12769 1436 aa22.21■■□□□ 1.15
SCLT1-208ENST00000506368 TIAM1Q13009 1591 aa22.19■■□□□ 1.14
SCLT1-208ENST00000506368 MSH5O43196 834 aa22.19■■□□□ 1.14
SCLT1-208ENST00000506368 ARHGAP35Q9NRY4 1499 aa22.19■■□□□ 1.14
SCLT1-208ENST00000506368 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
SCLT1-208ENST00000506368 RANGAP1P46060 587 aaPredicted RBP22.14■■□□□ 1.13
SCLT1-208ENST00000506368 CTTNBP2Q8WZ74 1663 aa22.11■■□□□ 1.13
SCLT1-208ENST00000506368 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.1■■□□□ 1.13
SCLT1-208ENST00000506368 KIAA0586Q9BVV6 1533 aa22.08■■□□□ 1.13
SCLT1-208ENST00000506368 TRIM52Q96A61 297 aa22.08■■□□□ 1.12
SCLT1-208ENST00000506368 LRRC9Q6ZRR7 1453 aa22.07■■□□□ 1.12
SCLT1-208ENST00000506368 ITGAEP38570 1179 aa22.07■■□□□ 1.12
SCLT1-208ENST00000506368 IQGAP2Q13576 1575 aa22.06■■□□□ 1.12
SCLT1-208ENST00000506368 CFAP43Q8NDM7 1665 aa22.05■■□□□ 1.12
SCLT1-208ENST00000506368 JPH4Q96JJ6 628 aa22.03■■□□□ 1.12
SCLT1-208ENST00000506368 ERCC6L2Q5T890 1561 aa22.03■■□□□ 1.12
SCLT1-208ENST00000506368 SHROOM2Q13796 1616 aa22■■□□□ 1.11
SCLT1-208ENST00000506368 PPP4R2Q9NY27 417 aa22■■□□□ 1.11
SCLT1-208ENST00000506368 DNAJC5Q9H3Z4 198 aa21.99■■□□□ 1.11
SCLT1-208ENST00000506368 SIN3AQ96ST3 1273 aa21.97■■□□□ 1.11
SCLT1-208ENST00000506368 PRG4Q92954 1404 aaPredicted RBP21.96■■□□□ 1.11
SCLT1-208ENST00000506368 ARHGEF11O15085 1522 aa21.95■■□□□ 1.1
SCLT1-208ENST00000506368 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
SCLT1-208ENST00000506368 PHLDB1Q86UU1 1377 aa21.93■■□□□ 1.1
SCLT1-208ENST00000506368 RIMBP3CA6NJZ7 1639 aa21.93■■□□□ 1.1
SCLT1-208ENST00000506368 RIMBP3BA6NNM3 1639 aa21.93■■□□□ 1.1
SCLT1-208ENST00000506368 RIMBP3Q9UFD9 1639 aa21.93■■□□□ 1.1
SCLT1-208ENST00000506368 P3H3Q8IVL6 736 aa21.92■■□□□ 1.1
SCLT1-208ENST00000506368 UGGT2Q9NYU1 1516 aa21.91■■□□□ 1.1
SCLT1-208ENST00000506368 DISP1Q96F81 1524 aa21.91■■□□□ 1.1
SCLT1-208ENST00000506368 DEKP35659 375 aaKnown RBP21.9■■□□□ 1.1
SCLT1-208ENST00000506368 HNRNPUQ00839 825 aaKnown RBP eCLIP21.89■■□□□ 1.09
SCLT1-208ENST00000506368 KIAA0556O60303 1618 aa21.85■■□□□ 1.09
SCLT1-208ENST00000506368 UACAQ9BZF9 1416 aa21.84■■□□□ 1.09
SCLT1-208ENST00000506368 SAMD9Q5K651 1589 aa21.82■■□□□ 1.08
SCLT1-208ENST00000506368 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
SCLT1-208ENST00000506368 CARMIL2Q6F5E8 1435 aa21.81■■□□□ 1.08
SCLT1-208ENST00000506368 NOP58Q9Y2X3 529 aaKnown RBP21.81■■□□□ 1.08
SCLT1-208ENST00000506368 FYCO1Q9BQS8 1478 aa21.8■■□□□ 1.08
SCLT1-208ENST00000506368 FHOD3Q2V2M9 1422 aa21.79■■□□□ 1.08
SCLT1-208ENST00000506368 NCOA2Q15596 1464 aa21.79■■□□□ 1.08
SCLT1-208ENST00000506368 PRKCSHP14314 528 aaPredicted RBP21.79■■□□□ 1.08
SCLT1-208ENST00000506368 CYB5RLQ6IPT4 315 aa21.79■■□□□ 1.08
SCLT1-208ENST00000506368 PCF11O94913 1555 aaKnown RBP21.78■■□□□ 1.08
SCLT1-208ENST00000506368 CCDC18Q5T9S5 1454 aa21.78■■□□□ 1.08
SCLT1-208ENST00000506368 HFM1A2PYH4 1435 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms