RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 LRRC9Q6ZRR7 1453 aa17.09■□□□□ 0.33
UBE3D-206ENST00000505226 MAP3K1Q13233 1512 aa17.08■□□□□ 0.32
UBE3D-206ENST00000505226 DDX10Q13206 875 aaKnown RBP17.06■□□□□ 0.32
UBE3D-206ENST00000505226 CARMIL1Q5VZK9 1371 aa17.06■□□□□ 0.32
UBE3D-206ENST00000505226 FAM50AQ14320 339 aaKnown RBP17.04■□□□□ 0.32
UBE3D-206ENST00000505226 P3H3Q8IVL6 736 aa17.02■□□□□ 0.32
UBE3D-206ENST00000505226 HIRIP3Q9BW71 556 aaPredicted RBP17.02■□□□□ 0.31
UBE3D-206ENST00000505226 PPP1R15AO75807 674 aaPredicted RBP17.01■□□□□ 0.31
UBE3D-206ENST00000505226 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
UBE3D-206ENST00000505226 BCANQ96GW7 911 aa17■□□□□ 0.31
UBE3D-206ENST00000505226 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
UBE3D-206ENST00000505226 PCF11O94913 1555 aaKnown RBP16.98■□□□□ 0.31
UBE3D-206ENST00000505226 CFAP43Q8NDM7 1665 aa16.95■□□□□ 0.3
UBE3D-206ENST00000505226 ATP1B4Q9UN42 357 aaPredicted RBP16.95■□□□□ 0.3
UBE3D-206ENST00000505226 FKBP8Q14318 412 aa16.95■□□□□ 0.3
UBE3D-206ENST00000505226 CADPSQ9ULU8 1353 aa16.95■□□□□ 0.3
UBE3D-206ENST00000505226 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
UBE3D-206ENST00000505226 FHOD3Q2V2M9 1422 aa16.92■□□□□ 0.3
UBE3D-206ENST00000505226 TRIM52Q96A61 297 aa16.88■□□□□ 0.29
UBE3D-206ENST00000505226 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
UBE3D-206ENST00000505226 ANP32EQ9BTT0 268 aa16.86■□□□□ 0.29
UBE3D-206ENST00000505226 RAD54L2Q9Y4B4 1467 aa16.85■□□□□ 0.29
UBE3D-206ENST00000505226 FYCO1Q9BQS8 1478 aa16.84■□□□□ 0.29
UBE3D-206ENST00000505226 PTPRKQ15262 1439 aa16.83■□□□□ 0.28
UBE3D-206ENST00000505226 CASKIN1Q8WXD9 1431 aa16.83■□□□□ 0.28
UBE3D-206ENST00000505226 CCER2I3L3R5 266 aa16.83■□□□□ 0.28
UBE3D-206ENST00000505226 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.82■□□□□ 0.28
UBE3D-206ENST00000505226 ANP32CO43423 234 aa16.81■□□□□ 0.28
UBE3D-206ENST00000505226 FGD6Q6ZV73 1430 aa16.8■□□□□ 0.28
UBE3D-206ENST00000505226 FANCD2Q9BXW9 1451 aa16.79■□□□□ 0.28
UBE3D-206ENST00000505226 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.28
UBE3D-206ENST00000505226 CCDC18Q5T9S5 1454 aa16.77■□□□□ 0.27
UBE3D-206ENST00000505226 EFCAB5A4FU69 1503 aa16.77■□□□□ 0.27
UBE3D-206ENST00000505226 ABCA10Q8WWZ4 1543 aa16.76■□□□□ 0.27
UBE3D-206ENST00000505226 TONSLQ96HA7 1378 aa16.76■□□□□ 0.27
UBE3D-206ENST00000505226 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
UBE3D-206ENST00000505226 SNAPC4Q5SXM2 1469 aa16.76■□□□□ 0.27
UBE3D-206ENST00000505226 RBM19Q9Y4C8 960 aaKnown RBP16.75■□□□□ 0.27
UBE3D-206ENST00000505226 HFM1A2PYH4 1435 aa16.74■□□□□ 0.27
UBE3D-206ENST00000505226 KDM5BQ9UGL1 1544 aa16.73■□□□□ 0.27
UBE3D-206ENST00000505226 UACAQ9BZF9 1416 aa16.73■□□□□ 0.27
UBE3D-206ENST00000505226 PTPN23Q9H3S7 1636 aa16.73■□□□□ 0.27
UBE3D-206ENST00000505226 NEFLP07196 543 aa16.72■□□□□ 0.27
UBE3D-206ENST00000505226 LRRIQ1Q96JM4 1722 aa16.72■□□□□ 0.27
UBE3D-206ENST00000505226 TOPBP1Q92547 1522 aa16.72■□□□□ 0.27
UBE3D-206ENST00000505226 DNMBPQ6XZF7 1577 aa16.72■□□□□ 0.27
UBE3D-206ENST00000505226 CTTNBP2Q8WZ74 1663 aa16.72■□□□□ 0.27
UBE3D-206ENST00000505226 NAIPQ13075 1403 aa16.71■□□□□ 0.27
UBE3D-206ENST00000505226 MTUS2Q5JR59 1369 aa16.7■□□□□ 0.26
UBE3D-206ENST00000505226 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
UBE3D-206ENST00000505226 CC2D2AQ9P2K1 1620 aa16.69■□□□□ 0.26
UBE3D-206ENST00000505226 NESP48681 1621 aa16.68■□□□□ 0.26
UBE3D-206ENST00000505226 CUL7Q14999 1698 aa16.68■□□□□ 0.26
UBE3D-206ENST00000505226 NCOA2Q15596 1464 aa16.67■□□□□ 0.26
UBE3D-206ENST00000505226 MYOM3Q5VTT5 1437 aa16.65■□□□□ 0.26
UBE3D-206ENST00000505226 DENND4BO75064 1496 aaPredicted RBP16.64■□□□□ 0.25
UBE3D-206ENST00000505226 WASHC2AQ641Q2 1341 aa16.63■□□□□ 0.25
UBE3D-206ENST00000505226 GRIN2BQ13224 1484 aa16.63■□□□□ 0.25
UBE3D-206ENST00000505226 SAMD9Q5K651 1589 aa16.63■□□□□ 0.25
UBE3D-206ENST00000505226 IRX6P78412 446 aaPredicted RBP16.62■□□□□ 0.25
UBE3D-206ENST00000505226 HNRNPUQ00839 825 aaKnown RBP eCLIP16.62■□□□□ 0.25
UBE3D-206ENST00000505226 RRP7BPQ9NSQ0 103 aa16.61■□□□□ 0.25
UBE3D-206ENST00000505226 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
UBE3D-206ENST00000505226 MSH5O43196 834 aa16.61■□□□□ 0.25
UBE3D-206ENST00000505226 HSPA5P11021 654 aaKnown RBP16.6■□□□□ 0.25
UBE3D-206ENST00000505226 MAGI3Q5TCQ9 1506 aa16.6■□□□□ 0.25
UBE3D-206ENST00000505226 CCDC184Q52MB2 194 aa16.6■□□□□ 0.25
UBE3D-206ENST00000505226 CHIC2Q9UKJ5 165 aa16.6■□□□□ 0.25
UBE3D-206ENST00000505226 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
UBE3D-206ENST00000505226 KDM6BO15054 1643 aa16.57■□□□□ 0.24
UBE3D-206ENST00000505226 SUPT6HQ7KZ85 1726 aaKnown RBP16.57■□□□□ 0.24
UBE3D-206ENST00000505226 UGGT2Q9NYU1 1516 aa16.56■□□□□ 0.24
UBE3D-206ENST00000505226 ARHGEF11O15085 1522 aa16.56■□□□□ 0.24
UBE3D-206ENST00000505226 C11orf95C9JLR9 678 aaPredicted RBP16.55■□□□□ 0.24
UBE3D-206ENST00000505226 EHBP1L1Q8N3D4 1523 aa16.54■□□□□ 0.24
UBE3D-206ENST00000505226 ABCA5Q8WWZ7 1642 aa16.54■□□□□ 0.24
UBE3D-206ENST00000505226 FOXD1Q16676 465 aa16.52■□□□□ 0.24
UBE3D-206ENST00000505226 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
UBE3D-206ENST00000505226 THOC2Q8NI27 1593 aaKnown RBP16.51■□□□□ 0.23
UBE3D-206ENST00000505226 TCOF1Q13428 1488 aaKnown RBP16.5■□□□□ 0.23
UBE3D-206ENST00000505226 L3MBTL2Q969R5 705 aa16.5■□□□□ 0.23
UBE3D-206ENST00000505226 HECW1Q76N89 1606 aa16.49■□□□□ 0.23
UBE3D-206ENST00000505226 EIF4G2P78344 907 aaKnown RBP eCLIP16.49■□□□□ 0.23
UBE3D-206ENST00000505226 GCC2Q8IWJ2 1684 aa16.49■□□□□ 0.23
UBE3D-206ENST00000505226 MPHOSPH9Q99550 1183 aa16.49■□□□□ 0.23
UBE3D-206ENST00000505226 BCL11AQ9H165 835 aa16.48■□□□□ 0.23
UBE3D-206ENST00000505226 CNTLNQ9NXG0 1405 aa16.47■□□□□ 0.23
UBE3D-206ENST00000505226 LAMC3Q9Y6N6 1575 aa16.46■□□□□ 0.23
UBE3D-206ENST00000505226 PRKRIP1Q9H875 184 aaPredicted RBP16.45■□□□□ 0.22
UBE3D-206ENST00000505226 NBPF8Q3BBV2 869 aa16.45■□□□□ 0.22
UBE3D-206ENST00000505226 ARID3CA6NKF2 412 aa16.44■□□□□ 0.22
UBE3D-206ENST00000505226 NCOA1Q15788 1441 aa16.44■□□□□ 0.22
UBE3D-206ENST00000505226 CDK11AQ9UQ88 783 aaPredicted RBP16.44■□□□□ 0.22
UBE3D-206ENST00000505226 CCDC7Q96M83 1385 aa16.44■□□□□ 0.22
UBE3D-206ENST00000505226 FANCIQ9NVI1 1328 aa16.43■□□□□ 0.22
UBE3D-206ENST00000505226 FAM9BQ8IZU0 186 aa16.43■□□□□ 0.22
UBE3D-206ENST00000505226 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
UBE3D-206ENST00000505226 AKNAQ7Z591 1439 aa16.42■□□□□ 0.22
UBE3D-206ENST00000505226 EPRSP07814 1512 aaKnown RBP16.42■□□□□ 0.22
UBE3D-206ENST00000505226 DNAJC5BQ9UF47 199 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms