RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 RUSC2Q8N2Y8 1516 aa13.22□□□□□ -0.29
HPS4-217ENST00000496385 ABCA5Q8WWZ7 1642 aa13.19□□□□□ -0.3
HPS4-217ENST00000496385 SNAPC4Q5SXM2 1469 aa13.19□□□□□ -0.3
HPS4-217ENST00000496385 PBRM1Q86U86 1689 aa13.17□□□□□ -0.3
HPS4-217ENST00000496385 GRIN2BQ13224 1484 aa13.17□□□□□ -0.3
HPS4-217ENST00000496385 KIF27Q86VH2 1401 aa13.16□□□□□ -0.3
HPS4-217ENST00000496385 APLP2Q06481 763 aa13.16□□□□□ -0.3
HPS4-217ENST00000496385 MYT1LQ9UL68 1186 aa13.15□□□□□ -0.3
HPS4-217ENST00000496385 EHMT2Q96KQ7 1210 aa13.15□□□□□ -0.3
HPS4-217ENST00000496385 CHMP7Q8WUX9 453 aaPredicted RBP13.13□□□□□ -0.31
HPS4-217ENST00000496385 IGF1RP08069 1367 aa13.11□□□□□ -0.31
HPS4-217ENST00000496385 CHD1O14646 1710 aa13.11□□□□□ -0.31
HPS4-217ENST00000496385 MAGI1Q96QZ7 1491 aaPredicted RBP13.09□□□□□ -0.31
HPS4-217ENST00000496385 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.32
HPS4-217ENST00000496385 ADAMTS12P58397 1594 aa13.07□□□□□ -0.32
HPS4-217ENST00000496385 SYNJ2O15056 1496 aa13.06□□□□□ -0.32
HPS4-217ENST00000496385 OSCARQ8IYS5 282 aa13.06□□□□□ -0.32
HPS4-217ENST00000496385 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
HPS4-217ENST00000496385 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
HPS4-217ENST00000496385 GRIN2AQ12879 1464 aa13.02□□□□□ -0.32
HPS4-217ENST00000496385 RBM19Q9Y4C8 960 aaKnown RBP13.02□□□□□ -0.33
HPS4-217ENST00000496385 SLC24A1O60721 1099 aa13□□□□□ -0.33
HPS4-217ENST00000496385 CUL7Q14999 1698 aa12.99□□□□□ -0.33
HPS4-217ENST00000496385 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
HPS4-217ENST00000496385 CEP170Q5SW79 1584 aa12.97□□□□□ -0.33
HPS4-217ENST00000496385 RANGAP1P46060 587 aaPredicted RBP12.96□□□□□ -0.33
HPS4-217ENST00000496385 FANCIQ9NVI1 1328 aa12.96□□□□□ -0.33
HPS4-217ENST00000496385 RAPGEF2Q9Y4G8 1499 aa12.96□□□□□ -0.34
HPS4-217ENST00000496385 EEA1Q15075 1411 aa12.94□□□□□ -0.34
HPS4-217ENST00000496385 PRXQ9BXM0 1461 aa12.94□□□□□ -0.34
HPS4-217ENST00000496385 CEP162Q5TB80 1403 aa12.92□□□□□ -0.34
HPS4-217ENST00000496385 TNIKQ9UKE5 1360 aa12.92□□□□□ -0.34
HPS4-217ENST00000496385 NUP160Q12769 1436 aa12.92□□□□□ -0.34
HPS4-217ENST00000496385 ERICH6BQ5W0A0 696 aa12.92□□□□□ -0.34
HPS4-217ENST00000496385 CLASP1Q7Z460 1538 aa12.9□□□□□ -0.34
HPS4-217ENST00000496385 UBTFP17480 764 aaKnown RBP12.89□□□□□ -0.35
HPS4-217ENST00000496385 JPH4Q96JJ6 628 aa12.87□□□□□ -0.35
HPS4-217ENST00000496385 ERCC6L2Q5T890 1561 aa12.87□□□□□ -0.35
HPS4-217ENST00000496385 MSH5O43196 834 aa12.86□□□□□ -0.35
HPS4-217ENST00000496385 NEFLP07196 543 aa12.86□□□□□ -0.35
HPS4-217ENST00000496385 FKBP8Q14318 412 aa12.85□□□□□ -0.35
HPS4-217ENST00000496385 ARHGEF11O15085 1522 aa12.85□□□□□ -0.35
HPS4-217ENST00000496385 KIAA0586Q9BVV6 1533 aa12.85□□□□□ -0.35
HPS4-217ENST00000496385 KIF21BO75037 1637 aa12.84□□□□□ -0.35
HPS4-217ENST00000496385 PRG4Q92954 1404 aaPredicted RBP12.83□□□□□ -0.36
HPS4-217ENST00000496385 RIMBP3CA6NJZ7 1639 aa12.83□□□□□ -0.36
HPS4-217ENST00000496385 RIMBP3BA6NNM3 1639 aa12.83□□□□□ -0.36
HPS4-217ENST00000496385 RIMBP3Q9UFD9 1639 aa12.83□□□□□ -0.36
HPS4-217ENST00000496385 P3H3Q8IVL6 736 aa12.83□□□□□ -0.36
HPS4-217ENST00000496385 IQGAP2Q13576 1575 aa12.82□□□□□ -0.36
HPS4-217ENST00000496385 CYB5RLQ6IPT4 315 aa12.82□□□□□ -0.36
HPS4-217ENST00000496385 GOLGA3Q08378 1498 aa12.82□□□□□ -0.36
HPS4-217ENST00000496385 CTTNBP2Q8WZ74 1663 aa12.81□□□□□ -0.36
HPS4-217ENST00000496385 DEKP35659 375 aaKnown RBP12.79□□□□□ -0.36
HPS4-217ENST00000496385 SHROOM2Q13796 1616 aa12.78□□□□□ -0.36
HPS4-217ENST00000496385 BCANQ96GW7 911 aa12.77□□□□□ -0.36
HPS4-217ENST00000496385 ARAP1Q96P48 1450 aa12.76□□□□□ -0.37
HPS4-217ENST00000496385 DISP1Q96F81 1524 aa12.73□□□□□ -0.37
HPS4-217ENST00000496385 HNRNPUL2Q1KMD3 747 aaKnown RBP12.73□□□□□ -0.37
HPS4-217ENST00000496385 ANO8Q9HCE9 1232 aaPredicted RBP12.73□□□□□ -0.37
HPS4-217ENST00000496385 UBE2Q2Q8WVN8 375 aa12.72□□□□□ -0.37
HPS4-217ENST00000496385 UGGT2Q9NYU1 1516 aa12.72□□□□□ -0.37
HPS4-217ENST00000496385 CDK11AQ9UQ88 783 aaPredicted RBP12.72□□□□□ -0.37
HPS4-217ENST00000496385 CARMIL2Q6F5E8 1435 aa12.71□□□□□ -0.37
HPS4-217ENST00000496385 DHX57Q6P158 1386 aaKnown RBP12.71□□□□□ -0.37
HPS4-217ENST00000496385 KIAA0556O60303 1618 aa12.7□□□□□ -0.38
HPS4-217ENST00000496385 ARID3CA6NKF2 412 aa12.69□□□□□ -0.38
HPS4-217ENST00000496385 FHOD3Q2V2M9 1422 aa12.69□□□□□ -0.38
HPS4-217ENST00000496385 PTPRGP23470 1445 aa12.68□□□□□ -0.38
HPS4-217ENST00000496385 CCER2I3L3R5 266 aa12.66□□□□□ -0.38
HPS4-217ENST00000496385 ARHGAP35Q9NRY4 1499 aa12.65□□□□□ -0.39
HPS4-217ENST00000496385 SAMD9Q5K651 1589 aa12.64□□□□□ -0.39
HPS4-217ENST00000496385 ATP1B4Q9UN42 357 aaPredicted RBP12.64□□□□□ -0.39
HPS4-217ENST00000496385 PLB1Q6P1J6 1458 aa12.63□□□□□ -0.39
HPS4-217ENST00000496385 CLIP1P30622 1438 aa12.63□□□□□ -0.39
HPS4-217ENST00000496385 VPS8Q8N3P4 1428 aa12.61□□□□□ -0.39
HPS4-217ENST00000496385 ITGAEP38570 1179 aa12.6□□□□□ -0.39
HPS4-217ENST00000496385 KCNH8Q96L42 1107 aa12.59□□□□□ -0.39
HPS4-217ENST00000496385 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
HPS4-217ENST00000496385 ADCY10Q96PN6 1610 aa12.59□□□□□ -0.39
HPS4-217ENST00000496385 EFCAB5A4FU69 1503 aa12.59□□□□□ -0.39
HPS4-217ENST00000496385 UACAQ9BZF9 1416 aa12.58□□□□□ -0.4
HPS4-217ENST00000496385 NOP58Q9Y2X3 529 aaKnown RBP12.57□□□□□ -0.4
HPS4-217ENST00000496385 NPM1P06748 294 aaKnown RBP eCLIP12.55□□□□□ -0.4
HPS4-217ENST00000496385 ABCC2Q92887 1545 aa12.53□□□□□ -0.4
HPS4-217ENST00000496385 ABCA8O94911 1581 aa12.53□□□□□ -0.4
HPS4-217ENST00000496385 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
HPS4-217ENST00000496385 RAPGEF6Q8TEU7 1601 aa12.52□□□□□ -0.41
HPS4-217ENST00000496385 PPP4R2Q9NY27 417 aa12.51□□□□□ -0.41
HPS4-217ENST00000496385 RTL5Q5HYW3 569 aaPredicted RBP12.51□□□□□ -0.41
HPS4-217ENST00000496385 FMN1Q68DA7 1419 aa12.51□□□□□ -0.41
HPS4-217ENST00000496385 PPP1R15AO75807 674 aaPredicted RBP12.5□□□□□ -0.41
HPS4-217ENST00000496385 NUP153P49790 1475 aaKnown RBP12.5□□□□□ -0.41
HPS4-217ENST00000496385 PCF11O94913 1555 aaKnown RBP12.5□□□□□ -0.41
HPS4-217ENST00000496385 CDK13Q14004 1512 aaKnown RBP12.49□□□□□ -0.41
HPS4-217ENST00000496385 ZCCHC11Q5TAX3 1644 aaKnown RBP12.49□□□□□ -0.41
HPS4-217ENST00000496385 ANP32CO43423 234 aa12.48□□□□□ -0.41
HPS4-217ENST00000496385 TIMELESSQ9UNS1 1208 aa12.48□□□□□ -0.41
HPS4-217ENST00000496385 UHRF1BP1LA0JNW5 1464 aa12.48□□□□□ -0.41
HPS4-217ENST00000496385 ATP10BO94823 1461 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms