RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 NISCHQ9Y2I1 1504 aa18.63■□□□□ 0.57
HPS4-217ENST00000496385 CCDC180Q9P1Z9 1646 aa16.39■□□□□ 0.21
HPS4-217ENST00000496385 ABCC9O60706 1549 aa16.1■□□□□ 0.17
HPS4-217ENST00000496385 DCAF8L2P0C7V8 631 aa15.75■□□□□ 0.11
HPS4-217ENST00000496385 PELP1Q8IZL8 1130 aaKnown RBP15.54■□□□□ 0.08
HPS4-217ENST00000496385 ZCCHC6Q5VYS8 1495 aaKnown RBP15.54■□□□□ 0.08
HPS4-217ENST00000496385 RB1CC1Q8TDY2 1594 aa15.4■□□□□ 0.06
HPS4-217ENST00000496385 NACADO15069 1562 aa15.39■□□□□ 0.05
HPS4-217ENST00000496385 HRCP23327 699 aa15.34■□□□□ 0.05
HPS4-217ENST00000496385 DCAF1Q9Y4B6 1507 aa15.29■□□□□ 0.04
HPS4-217ENST00000496385 MYO15BQ96JP2 1530 aa15.26■□□□□ 0.03
HPS4-217ENST00000496385 SCRIBQ14160 1630 aa15.16■□□□□ 0.02
HPS4-217ENST00000496385 MYT1Q01538 1121 aa15.16■□□□□ 0.02
HPS4-217ENST00000496385 PABPN1Q86U42 306 aaKnown RBP eCLIP15.14■□□□□ 0.01
HPS4-217ENST00000496385 UNC13AQ9UPW8 1703 aa15.13■□□□□ 0.01
HPS4-217ENST00000496385 SHROOM4Q9ULL8 1493 aa15.08■□□□□ 0
HPS4-217ENST00000496385 BICRAQ9NZM4 1560 aa14.98□□□□□ -0.01
HPS4-217ENST00000496385 PPARGC1BQ86YN6 1023 aaKnown RBP14.69□□□□□ -0.06
HPS4-217ENST00000496385 PCGF6Q9BYE7 350 aa14.67□□□□□ -0.06
HPS4-217ENST00000496385 DNAJC5BQ9UF47 199 aa14.67□□□□□ -0.06
HPS4-217ENST00000496385 CECR2Q9BXF3 1484 aa14.6□□□□□ -0.07
HPS4-217ENST00000496385 EIF4G1Q04637 1599 aaKnown RBP14.57□□□□□ -0.08
HPS4-217ENST00000496385 SCAF1Q9H7N4 1312 aaKnown RBP14.55□□□□□ -0.08
HPS4-217ENST00000496385 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
HPS4-217ENST00000496385 CC2D2AQ9P2K1 1620 aa14.5□□□□□ -0.09
HPS4-217ENST00000496385 MROH2BQ7Z745 1585 aa14.43□□□□□ -0.1
HPS4-217ENST00000496385 SMARCA4P51532 1647 aa14.43□□□□□ -0.1
HPS4-217ENST00000496385 BAZ1AQ9NRL2 1556 aaPredicted RBP14.41□□□□□ -0.1
HPS4-217ENST00000496385 CHIC1Q5VXU3 224 aa14.39□□□□□ -0.11
HPS4-217ENST00000496385 TTBK1Q5TCY1 1321 aaPredicted RBP14.38□□□□□ -0.11
HPS4-217ENST00000496385 TRIM26Q12899 539 aaPredicted RBP14.35□□□□□ -0.11
HPS4-217ENST00000496385 ATAD2BQ9ULI0 1458 aa14.31□□□□□ -0.12
HPS4-217ENST00000496385 SUPT5HO00267 1087 aaKnown RBP14.31□□□□□ -0.12
HPS4-217ENST00000496385 RSF1Q96T23 1441 aaPredicted RBP14.3□□□□□ -0.12
HPS4-217ENST00000496385 WIZO95785 1651 aa14.3□□□□□ -0.12
HPS4-217ENST00000496385 SMARCA2P51531 1590 aa14.25□□□□□ -0.13
HPS4-217ENST00000496385 ACIN1Q9UKV3 1341 aaKnown RBP14.23□□□□□ -0.13
HPS4-217ENST00000496385 NCAPD3P42695 1498 aa14.22□□□□□ -0.13
HPS4-217ENST00000496385 BAZ1BQ9UIG0 1483 aaKnown RBP14.22□□□□□ -0.13
HPS4-217ENST00000496385 PEG3Q9GZU2 1588 aa14.19□□□□□ -0.14
HPS4-217ENST00000496385 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
HPS4-217ENST00000496385 CENPBP07199 599 aaPredicted RBP14.09□□□□□ -0.15
HPS4-217ENST00000496385 TOP2AP11388 1531 aaKnown RBP14.06□□□□□ -0.16
HPS4-217ENST00000496385 NEUROD1Q13562 356 aa14.04□□□□□ -0.16
HPS4-217ENST00000496385 GTF3C3Q9Y5Q9 886 aa14.01□□□□□ -0.17
HPS4-217ENST00000496385 NESP48681 1621 aa13.99□□□□□ -0.17
HPS4-217ENST00000496385 CCDC88BA6NC98 1476 aa13.96□□□□□ -0.17
HPS4-217ENST00000496385 LOC105371045A0A1W2PR82 267 aa13.89□□□□□ -0.19
HPS4-217ENST00000496385 CADPSQ9ULU8 1353 aa13.87□□□□□ -0.19
HPS4-217ENST00000496385 ERCC6Q03468 1493 aa13.83□□□□□ -0.2
HPS4-217ENST00000496385 LAMC3Q9Y6N6 1575 aa13.82□□□□□ -0.2
HPS4-217ENST00000496385 CFTRP13569 1480 aa13.8□□□□□ -0.2
HPS4-217ENST00000496385 KIF21AQ7Z4S6 1674 aa13.77□□□□□ -0.2
HPS4-217ENST00000496385 DIEXFQ68CQ4 756 aaKnown RBP13.77□□□□□ -0.21
HPS4-217ENST00000496385 PDS5BQ9NTI5 1447 aa13.75□□□□□ -0.21
HPS4-217ENST00000496385 FANCD2Q9BXW9 1451 aa13.74□□□□□ -0.21
HPS4-217ENST00000496385 BCL11AQ9H165 835 aa13.71□□□□□ -0.21
HPS4-217ENST00000496385 CEP164Q9UPV0 1460 aa13.69□□□□□ -0.22
HPS4-217ENST00000496385 PRDM2Q13029 1718 aa13.66□□□□□ -0.22
HPS4-217ENST00000496385 CLSPNQ9HAW4 1339 aa13.66□□□□□ -0.22
HPS4-217ENST00000496385 THOC2Q8NI27 1593 aaKnown RBP13.63□□□□□ -0.23
HPS4-217ENST00000496385 ANP32EQ9BTT0 268 aa13.62□□□□□ -0.23
HPS4-217ENST00000496385 MRC2Q9UBG0 1479 aa13.61□□□□□ -0.23
HPS4-217ENST00000496385 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
HPS4-217ENST00000496385 URB2Q14146 1524 aaKnown RBP13.6□□□□□ -0.23
HPS4-217ENST00000496385 ABCC8Q09428 1581 aa13.58□□□□□ -0.23
HPS4-217ENST00000496385 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
HPS4-217ENST00000496385 WDR62O43379 1518 aa13.54□□□□□ -0.24
HPS4-217ENST00000496385 FAM9AQ8IZU1 332 aaPredicted RBP13.53□□□□□ -0.24
HPS4-217ENST00000496385 TOPBP1Q92547 1522 aa13.53□□□□□ -0.24
HPS4-217ENST00000496385 CUX1P39880 1505 aa13.51□□□□□ -0.25
HPS4-217ENST00000496385 ZNF316A6NFI3 1004 aaPredicted RBP13.49□□□□□ -0.25
HPS4-217ENST00000496385 CUX2O14529 1486 aa13.49□□□□□ -0.25
HPS4-217ENST00000496385 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
HPS4-217ENST00000496385 WRNQ14191 1432 aaPredicted RBP eCLIP13.48□□□□□ -0.259e-6■■■■■ 50.1
HPS4-217ENST00000496385 SYNJ1O43426 1573 aa13.46□□□□□ -0.25
HPS4-217ENST00000496385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.46□□□□□ -0.25
HPS4-217ENST00000496385 FGD5Q6ZNL6 1462 aa13.44□□□□□ -0.26
HPS4-217ENST00000496385 RAD54L2Q9Y4B4 1467 aa13.44□□□□□ -0.26
HPS4-217ENST00000496385 POLA1P09884 1462 aaPredicted RBP13.44□□□□□ -0.26
HPS4-217ENST00000496385 ERICH6Q7L0X2 663 aa13.41□□□□□ -0.26
HPS4-217ENST00000496385 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
HPS4-217ENST00000496385 SOGA1O94964 1423 aa13.39□□□□□ -0.27
HPS4-217ENST00000496385 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
HPS4-217ENST00000496385 PRKCSHP14314 528 aaPredicted RBP13.37□□□□□ -0.27
HPS4-217ENST00000496385 TDRD9Q8NDG6 1382 aaKnown RBP13.37□□□□□ -0.27
HPS4-217ENST00000496385 BIVM-ERCC5R4GMW8 1640 aa13.36□□□□□ -0.27
HPS4-217ENST00000496385 IFT140Q96RY7 1462 aa13.35□□□□□ -0.27
HPS4-217ENST00000496385 TSHZ2Q9NRE2 1034 aa13.35□□□□□ -0.27
HPS4-217ENST00000496385 AQRO60306 1485 aaKnown RBP eCLIP13.35□□□□□ -0.273e-8■■■■□ 23.3
HPS4-217ENST00000496385 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
HPS4-217ENST00000496385 TARBP1Q13395 1621 aaKnown RBP13.35□□□□□ -0.27
HPS4-217ENST00000496385 CSRNP3Q8WYN3 585 aa13.33□□□□□ -0.27
HPS4-217ENST00000496385 SUPT16HQ9Y5B9 1047 aaKnown RBP13.32□□□□□ -0.28
HPS4-217ENST00000496385 MIER1Q8N108 512 aa13.31□□□□□ -0.28
HPS4-217ENST00000496385 EIF4G3O43432 1585 aaKnown RBP13.29□□□□□ -0.28
HPS4-217ENST00000496385 ABCA10Q8WWZ4 1543 aa13.25□□□□□ -0.29
HPS4-217ENST00000496385 WDR97A6NE52 1622 aa13.25□□□□□ -0.29
HPS4-217ENST00000496385 FBLN2P98095 1184 aa13.24□□□□□ -0.29
HPS4-217ENST00000496385 GAPVD1Q14C86 1478 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms