RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 PDS5BQ9NTI5 1447 aa10.54□□□□□ -0.72
SF3A3-208ENST00000489537 SPDYE1Q8NFV5 336 aaPredicted RBP10.51□□□□□ -0.73
SF3A3-208ENST00000489537 SSUH2Q9Y2M2 353 aa10.51□□□□□ -0.73
SF3A3-208ENST00000489537 PIP4P2Q8N4L2 257 aa10.5□□□□□ -0.73
SF3A3-208ENST00000489537 MRC2Q9UBG0 1479 aa10.49□□□□□ -0.73
SF3A3-208ENST00000489537 CLEC11AQ9Y240 323 aa10.49□□□□□ -0.73
SF3A3-208ENST00000489537 CFTRP13569 1480 aa10.49□□□□□ -0.73
SF3A3-208ENST00000489537 WDR62O43379 1518 aa10.48□□□□□ -0.73
SF3A3-208ENST00000489537 FANCD2Q9BXW9 1451 aa10.48□□□□□ -0.73
SF3A3-208ENST00000489537 FXR2P51116 673 aaKnown RBP eCLIP10.46□□□□□ -0.73
SF3A3-208ENST00000489537 URB2Q14146 1524 aaKnown RBP10.45□□□□□ -0.74
SF3A3-208ENST00000489537 CCDC88BA6NC98 1476 aa10.44□□□□□ -0.74
SF3A3-208ENST00000489537 CEP164Q9UPV0 1460 aa10.44□□□□□ -0.74
SF3A3-208ENST00000489537 TRIM41Q8WV44 630 aa10.42□□□□□ -0.74
SF3A3-208ENST00000489537 HAX1O00165 279 aa10.35□□□□□ -0.75
SF3A3-208ENST00000489537 ZNF608Q9ULD9 1512 aaPredicted RBP10.34□□□□□ -0.75
SF3A3-208ENST00000489537 PRR29P0C7W0 189 aa10.34□□□□□ -0.75
SF3A3-208ENST00000489537 PRKAR2AP13861 404 aaKnown RBP10.34□□□□□ -0.75
SF3A3-208ENST00000489537 PRDM2Q13029 1718 aa10.3□□□□□ -0.76
SF3A3-208ENST00000489537 TOPBP1Q92547 1522 aa10.3□□□□□ -0.76
SF3A3-208ENST00000489537 SP7Q8TDD2 431 aaPredicted RBP10.3□□□□□ -0.76
SF3A3-208ENST00000489537 EEA1Q15075 1411 aa10.29□□□□□ -0.76
SF3A3-208ENST00000489537 SPDYE4A6NLX3 237 aa10.27□□□□□ -0.77
SF3A3-208ENST00000489537 STAG3Q9UJ98 1225 aa10.24□□□□□ -0.77
SF3A3-208ENST00000489537 WRNQ14191 1432 aaPredicted RBP eCLIP10.23□□□□□ -0.77
SF3A3-208ENST00000489537 AQRO60306 1485 aaKnown RBP eCLIP10.23□□□□□ -0.775e-7■■■■□ 25.2
SF3A3-208ENST00000489537 IFT140Q96RY7 1462 aa10.23□□□□□ -0.77
SF3A3-208ENST00000489537 RAD54L2Q9Y4B4 1467 aa10.22□□□□□ -0.77
SF3A3-208ENST00000489537 DNMBPQ6XZF7 1577 aa10.22□□□□□ -0.77
SF3A3-208ENST00000489537 TARBP1Q13395 1621 aaKnown RBP10.22□□□□□ -0.77
SF3A3-208ENST00000489537 EIF4G3O43432 1585 aaKnown RBP10.2□□□□□ -0.78
SF3A3-208ENST00000489537 POLA1P09884 1462 aaPredicted RBP10.2□□□□□ -0.78
SF3A3-208ENST00000489537 CHADLQ6NUI6 762 aa10.2□□□□□ -0.78
SF3A3-208ENST00000489537 CUX1P39880 1505 aa10.17□□□□□ -0.78
SF3A3-208ENST00000489537 TDRD9Q8NDG6 1382 aaKnown RBP10.16□□□□□ -0.78
SF3A3-208ENST00000489537 RIMBP3CA6NJZ7 1639 aa10.15□□□□□ -0.78
SF3A3-208ENST00000489537 RIMBP3BA6NNM3 1639 aa10.15□□□□□ -0.78
SF3A3-208ENST00000489537 RIMBP3Q9UFD9 1639 aa10.15□□□□□ -0.78
SF3A3-208ENST00000489537 ABCC8Q09428 1581 aa10.14□□□□□ -0.79
SF3A3-208ENST00000489537 FGD5Q6ZNL6 1462 aa10.14□□□□□ -0.79
SF3A3-208ENST00000489537 SOGA1O94964 1423 aa10.13□□□□□ -0.79
SF3A3-208ENST00000489537 CHD1O14646 1710 aa10.13□□□□□ -0.79
SF3A3-208ENST00000489537 ARHGEF11O15085 1522 aa10.12□□□□□ -0.79
SF3A3-208ENST00000489537 C19orf67A6NJJ6 358 aa10.12□□□□□ -0.79
SF3A3-208ENST00000489537 TOP2BQ02880 1626 aa10.09□□□□□ -0.79
SF3A3-208ENST00000489537 FARP1Q9Y4F1 1045 aaPredicted RBP10.09□□□□□ -0.79
SF3A3-208ENST00000489537 SNAPC4Q5SXM2 1469 aa10.08□□□□□ -0.8
SF3A3-208ENST00000489537 EVX2Q03828 476 aa10.07□□□□□ -0.8
SF3A3-208ENST00000489537 ARAP1Q96P48 1450 aa10.06□□□□□ -0.8
SF3A3-208ENST00000489537 LOC105371045A0A1W2PR82 267 aa10.06□□□□□ -0.8
SF3A3-208ENST00000489537 CYB5RLQ6IPT4 315 aa10.06□□□□□ -0.8
SF3A3-208ENST00000489537 WDR97A6NE52 1622 aa10.06□□□□□ -0.8
SF3A3-208ENST00000489537 BIVM-ERCC5R4GMW8 1640 aa10.06□□□□□ -0.8
SF3A3-208ENST00000489537 FAM9AQ8IZU1 332 aaPredicted RBP10.05□□□□□ -0.8
SF3A3-208ENST00000489537 TNIKQ9UKE5 1360 aa10.03□□□□□ -0.8
SF3A3-208ENST00000489537 SYNJ1O43426 1573 aa10.03□□□□□ -0.8
SF3A3-208ENST00000489537 CD44P16070 742 aaKnown RBP10.03□□□□□ -0.8
SF3A3-208ENST00000489537 GOLGA3Q08378 1498 aa10.03□□□□□ -0.8
SF3A3-208ENST00000489537 CLASP1Q7Z460 1538 aa10.02□□□□□ -0.8
SF3A3-208ENST00000489537 KIF27Q86VH2 1401 aa10.01□□□□□ -0.81
SF3A3-208ENST00000489537 GRIN2BQ13224 1484 aa10□□□□□ -0.81
SF3A3-208ENST00000489537 CREBZFQ9NS37 354 aa10□□□□□ -0.81
SF3A3-208ENST00000489537 ABCA10Q8WWZ4 1543 aa10□□□□□ -0.81
SF3A3-208ENST00000489537 ABCA5Q8WWZ7 1642 aa10□□□□□ -0.81
SF3A3-208ENST00000489537 GAPVD1Q14C86 1478 aa9.99□□□□□ -0.81
SF3A3-208ENST00000489537 KIF21BO75037 1637 aa9.99□□□□□ -0.81
SF3A3-208ENST00000489537 MAGI1Q96QZ7 1491 aaPredicted RBP9.98□□□□□ -0.81
SF3A3-208ENST00000489537 CHMP7Q8WUX9 453 aaPredicted RBP9.98□□□□□ -0.81
SF3A3-208ENST00000489537 PBRM1Q86U86 1689 aa9.98□□□□□ -0.81
SF3A3-208ENST00000489537 SYNJ2O15056 1496 aa9.98□□□□□ -0.81
SF3A3-208ENST00000489537 ERCC6L2Q5T890 1561 aa9.97□□□□□ -0.81
SF3A3-208ENST00000489537 CLCN6P51797 869 aa9.97□□□□□ -0.81
SF3A3-208ENST00000489537 NPM1P06748 294 aaKnown RBP eCLIP9.96□□□□□ -0.82
SF3A3-208ENST00000489537 GABBR2O75899 941 aa9.95□□□□□ -0.82
SF3A3-208ENST00000489537 PAK3O75914 559 aaPredicted RBP9.95□□□□□ -0.82
SF3A3-208ENST00000489537 UBTFP17480 764 aaKnown RBP9.95□□□□□ -0.82
SF3A3-208ENST00000489537 PROM2Q8N271 834 aa9.95□□□□□ -0.82
SF3A3-208ENST00000489537 ERICH3Q5RHP9 1530 aa9.95□□□□□ -0.82
SF3A3-208ENST00000489537 PLEKHG5O94827 1062 aa9.93□□□□□ -0.82
SF3A3-208ENST00000489537 TRIM26Q12899 539 aaPredicted RBP9.93□□□□□ -0.82
SF3A3-208ENST00000489537 ADAMTS12P58397 1594 aa9.92□□□□□ -0.82
SF3A3-208ENST00000489537 CEP170Q5SW79 1584 aa9.92□□□□□ -0.82
SF3A3-208ENST00000489537 GRIN2AQ12879 1464 aa9.91□□□□□ -0.82
SF3A3-208ENST00000489537 ZRANB1Q9UGI0 708 aa9.9□□□□□ -0.82
SF3A3-208ENST00000489537 PRXQ9BXM0 1461 aa9.9□□□□□ -0.83
SF3A3-208ENST00000489537 CEP162Q5TB80 1403 aa9.9□□□□□ -0.83
SF3A3-208ENST00000489537 NUP160Q12769 1436 aa9.89□□□□□ -0.83
SF3A3-208ENST00000489537 RUSC2Q8N2Y8 1516 aa9.87□□□□□ -0.83
SF3A3-208ENST00000489537 FHAD1B1AJZ9 1412 aa9.85□□□□□ -0.83
SF3A3-208ENST00000489537 FKBP8Q14318 412 aa9.85□□□□□ -0.83
SF3A3-208ENST00000489537 ZNF579Q8NAF0 562 aaKnown RBP9.85□□□□□ -0.83
SF3A3-208ENST00000489537 CLIP1P30622 1438 aa9.84□□□□□ -0.83
SF3A3-208ENST00000489537 SHROOM2Q13796 1616 aa9.83□□□□□ -0.84
SF3A3-208ENST00000489537 IGF1RP08069 1367 aa9.83□□□□□ -0.84
SF3A3-208ENST00000489537 RAPGEF2Q9Y4G8 1499 aa9.83□□□□□ -0.84
SF3A3-208ENST00000489537 MIER1Q8N108 512 aa9.82□□□□□ -0.84
SF3A3-208ENST00000489537 CARMIL1Q5VZK9 1371 aa9.82□□□□□ -0.84
SF3A3-208ENST00000489537 MNX1P50219 401 aaPredicted RBP9.8□□□□□ -0.84
SF3A3-208ENST00000489537 DCBLD2Q96PD2 775 aa9.8□□□□□ -0.84
SF3A3-208ENST00000489537 PCGF6Q9BYE7 350 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms