RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
SF3A3-208ENST00000489537 CHIC1Q5VXU3 224 aa18.55■□□□□ 0.56
SF3A3-208ENST00000489537 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
SF3A3-208ENST00000489537 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
SF3A3-208ENST00000489537 FOXD1Q16676 465 aa15.39■□□□□ 0.05
SF3A3-208ENST00000489537 PLPPR3Q6T4P5 718 aa14.94□□□□□ -0.02
SF3A3-208ENST00000489537 MSH5O43196 834 aa14.49□□□□□ -0.09
SF3A3-208ENST00000489537 PIAS4Q8N2W9 510 aaPredicted RBP14.48□□□□□ -0.09
SF3A3-208ENST00000489537 ADRA2BP18089 450 aa14.41□□□□□ -0.1
SF3A3-208ENST00000489537 PPP6R1Q9UPN7 881 aa14.4□□□□□ -0.1
SF3A3-208ENST00000489537 NISCHQ9Y2I1 1504 aa14□□□□□ -0.17
SF3A3-208ENST00000489537 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
SF3A3-208ENST00000489537 SCAF1Q9H7N4 1312 aaKnown RBP13.37□□□□□ -0.27
SF3A3-208ENST00000489537 MAPK8IP2Q13387 824 aaPredicted RBP13.18□□□□□ -0.3
SF3A3-208ENST00000489537 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
SF3A3-208ENST00000489537 PPP4R3CPQ6ZMV5 832 aa13.05□□□□□ -0.32
SF3A3-208ENST00000489537 CNKSR2Q8WXI2 1034 aa12.83□□□□□ -0.36
SF3A3-208ENST00000489537 DCAF8L1A6NGE4 600 aa12.7□□□□□ -0.38
SF3A3-208ENST00000489537 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
SF3A3-208ENST00000489537 NCBP3Q53F19 620 aaKnown RBP12.69□□□□□ -0.38
SF3A3-208ENST00000489537 RNF216Q9NWF9 866 aaPredicted RBP12.67□□□□□ -0.38
SF3A3-208ENST00000489537 ABCC9O60706 1549 aa12.56□□□□□ -0.4
SF3A3-208ENST00000489537 CCDC180Q9P1Z9 1646 aa12.44□□□□□ -0.42
SF3A3-208ENST00000489537 NPM3O75607 178 aaKnown RBP12.37□□□□□ -0.43
SF3A3-208ENST00000489537 CACNB1Q02641 598 aaPredicted RBP12.36□□□□□ -0.43
SF3A3-208ENST00000489537 DNAJC5BQ9UF47 199 aa12.3□□□□□ -0.44
SF3A3-208ENST00000489537 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
SF3A3-208ENST00000489537 KCNA4P22459 653 aa12.2□□□□□ -0.46
SF3A3-208ENST00000489537 C1QBPQ07021 282 aaKnown RBP12.18□□□□□ -0.46
SF3A3-208ENST00000489537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.18□□□□□ -0.461e-6■■■□□ 17.9
SF3A3-208ENST00000489537 U3KPZ7 1027 aaPredicted RBP11.84□□□□□ -0.51
SF3A3-208ENST00000489537 RB1CC1Q8TDY2 1594 aa11.84□□□□□ -0.51
SF3A3-208ENST00000489537 DCAF8L2P0C7V8 631 aa11.8□□□□□ -0.52
SF3A3-208ENST00000489537 NACADO15069 1562 aa11.77□□□□□ -0.53
SF3A3-208ENST00000489537 SLC4A2P04920 1241 aa11.74□□□□□ -0.53
SF3A3-208ENST00000489537 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
SF3A3-208ENST00000489537 APLP2Q06481 763 aa11.73□□□□□ -0.53
SF3A3-208ENST00000489537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.71□□□□□ -0.53
SF3A3-208ENST00000489537 CAPN15O75808 1086 aa11.71□□□□□ -0.53
SF3A3-208ENST00000489537 HNRNPUL2Q1KMD3 747 aaKnown RBP11.71□□□□□ -0.53
SF3A3-208ENST00000489537 ZCCHC6Q5VYS8 1495 aaKnown RBP11.7□□□□□ -0.54
SF3A3-208ENST00000489537 UNC13AQ9UPW8 1703 aa11.69□□□□□ -0.54
SF3A3-208ENST00000489537 BICRAQ9NZM4 1560 aa11.65□□□□□ -0.54
SF3A3-208ENST00000489537 SPINK5Q9NQ38 1064 aaPredicted RBP11.63□□□□□ -0.55
SF3A3-208ENST00000489537 DCAF1Q9Y4B6 1507 aa11.63□□□□□ -0.55
SF3A3-208ENST00000489537 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
SF3A3-208ENST00000489537 MYO15BQ96JP2 1530 aa11.6□□□□□ -0.55
SF3A3-208ENST00000489537 SAMD1Q6SPF0 538 aaPredicted RBP11.6□□□□□ -0.55
SF3A3-208ENST00000489537 ZNF219Q9P2Y4 722 aaPredicted RBP11.56□□□□□ -0.56
SF3A3-208ENST00000489537 DSG3P32926 999 aa11.54□□□□□ -0.56
SF3A3-208ENST00000489537 MYCNP04198 464 aaPredicted RBP11.52□□□□□ -0.57
SF3A3-208ENST00000489537 TRHP20396 242 aaPredicted RBP11.52□□□□□ -0.57
SF3A3-208ENST00000489537 SCRIBQ14160 1630 aa11.46□□□□□ -0.58
SF3A3-208ENST00000489537 FOXD4L1Q9NU39 408 aa11.44□□□□□ -0.58
SF3A3-208ENST00000489537 ABCB7O75027 752 aa11.38□□□□□ -0.59
SF3A3-208ENST00000489537 CC2D2AQ9P2K1 1620 aa11.31□□□□□ -0.6
SF3A3-208ENST00000489537 EIF4G1Q04637 1599 aaKnown RBP11.28□□□□□ -0.6
SF3A3-208ENST00000489537 SHROOM4Q9ULL8 1493 aa11.27□□□□□ -0.6
SF3A3-208ENST00000489537 CECR2Q9BXF3 1484 aa11.26□□□□□ -0.61
SF3A3-208ENST00000489537 POLA2Q14181 598 aa11.21□□□□□ -0.61
SF3A3-208ENST00000489537 ZBTB22O15209 634 aa11.15□□□□□ -0.62
SF3A3-208ENST00000489537 RBM42Q9BTD8 480 aaKnown RBP11.14□□□□□ -0.63
SF3A3-208ENST00000489537 ATXN8OSP0DMR3 200 aa11.1□□□□□ -0.63
SF3A3-208ENST00000489537 ATF5Q9Y2D1 282 aaPredicted RBP11.1□□□□□ -0.63
SF3A3-208ENST00000489537 ZBTB12Q9Y330 459 aaPredicted RBP11.1□□□□□ -0.63
SF3A3-208ENST00000489537 SUPT5HO00267 1087 aaKnown RBP10.96□□□□□ -0.65
SF3A3-208ENST00000489537 POTEHQ6S545 545 aa10.93□□□□□ -0.66
SF3A3-208ENST00000489537 NCAPD3P42695 1498 aa10.93□□□□□ -0.66
SF3A3-208ENST00000489537 ATAD2BQ9ULI0 1458 aa10.93□□□□□ -0.66
SF3A3-208ENST00000489537 SMARCA4P51532 1647 aa10.9□□□□□ -0.66
SF3A3-208ENST00000489537 FBLN2P98095 1184 aa10.86□□□□□ -0.67
SF3A3-208ENST00000489537 NESP48681 1621 aa10.85□□□□□ -0.67
SF3A3-208ENST00000489537 MROH2BQ7Z745 1585 aa10.85□□□□□ -0.67
SF3A3-208ENST00000489537 OSCARQ8IYS5 282 aa10.84□□□□□ -0.67
SF3A3-208ENST00000489537 AKT1S1Q96B36 256 aa10.84□□□□□ -0.67
SF3A3-208ENST00000489537 HMGXB3Q12766 1538 aa10.8□□□□□ -0.68
SF3A3-208ENST00000489537 RSF1Q96T23 1441 aaPredicted RBP10.8□□□□□ -0.68
SF3A3-208ENST00000489537 SMARCA2P51531 1590 aa10.8□□□□□ -0.68
SF3A3-208ENST00000489537 BAZ1AQ9NRL2 1556 aaPredicted RBP10.79□□□□□ -0.68
SF3A3-208ENST00000489537 CSRNP3Q8WYN3 585 aa10.78□□□□□ -0.68
SF3A3-208ENST00000489537 CHRDL2Q6WN34 429 aa10.77□□□□□ -0.69
SF3A3-208ENST00000489537 PEG3Q9GZU2 1588 aa10.77□□□□□ -0.69
SF3A3-208ENST00000489537 BAZ1BQ9UIG0 1483 aaKnown RBP10.76□□□□□ -0.69
SF3A3-208ENST00000489537 EHMT2Q96KQ7 1210 aa10.75□□□□□ -0.69
SF3A3-208ENST00000489537 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
SF3A3-208ENST00000489537 ERCC6Q03468 1493 aa10.73□□□□□ -0.69
SF3A3-208ENST00000489537 SPDYE2BA6NHP3 402 aa10.71□□□□□ -0.69
SF3A3-208ENST00000489537 SPDYE6P0CI01 402 aa10.71□□□□□ -0.69
SF3A3-208ENST00000489537 SPDYE2Q495Y8 402 aa10.71□□□□□ -0.69
SF3A3-208ENST00000489537 WIZO95785 1651 aa10.7□□□□□ -0.7
SF3A3-208ENST00000489537 CUX2O14529 1486 aa10.69□□□□□ -0.7
SF3A3-208ENST00000489537 REM2Q8IYK8 340 aaPredicted RBP10.69□□□□□ -0.7
SF3A3-208ENST00000489537 THOC2Q8NI27 1593 aaKnown RBP10.66□□□□□ -0.7
SF3A3-208ENST00000489537 KIF21AQ7Z4S6 1674 aa10.63□□□□□ -0.71
SF3A3-208ENST00000489537 LAMC3Q9Y6N6 1575 aa10.61□□□□□ -0.71
SF3A3-208ENST00000489537 MKRN4PQ13434 485 aaPredicted RBP10.6□□□□□ -0.71
SF3A3-208ENST00000489537 ZNF692Q9BU19 519 aaPredicted RBP10.6□□□□□ -0.71
SF3A3-208ENST00000489537 CADPSQ9ULU8 1353 aa10.59□□□□□ -0.71
SF3A3-208ENST00000489537 PITPNM1O00562 1244 aa10.57□□□□□ -0.72
SF3A3-208ENST00000489537 TOP2AP11388 1531 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms