RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PHLDB1Q86UU1 1377 aa17.47■□□□□ 0.39
COL3A1-206ENST00000487010 WDR97A6NE52 1622 aa17.46■□□□□ 0.39
COL3A1-206ENST00000487010 TSHZ2Q9NRE2 1034 aa17.46■□□□□ 0.39
COL3A1-206ENST00000487010 CFAP43Q8NDM7 1665 aa17.46■□□□□ 0.38
COL3A1-206ENST00000487010 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
COL3A1-206ENST00000487010 FHAD1B1AJZ9 1412 aa17.44■□□□□ 0.38
COL3A1-206ENST00000487010 FGD5Q6ZNL6 1462 aa17.44■□□□□ 0.38
COL3A1-206ENST00000487010 SIN3AQ96ST3 1273 aa17.42■□□□□ 0.38
COL3A1-206ENST00000487010 TIMELESSQ9UNS1 1208 aa17.42■□□□□ 0.38
COL3A1-206ENST00000487010 FAM50AQ14320 339 aaKnown RBP17.41■□□□□ 0.38
COL3A1-206ENST00000487010 PCF11O94913 1555 aaKnown RBP17.4■□□□□ 0.38
COL3A1-206ENST00000487010 DDX10Q13206 875 aaKnown RBP17.4■□□□□ 0.38
COL3A1-206ENST00000487010 PPP1R15AO75807 674 aaPredicted RBP17.38■□□□□ 0.37
COL3A1-206ENST00000487010 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
COL3A1-206ENST00000487010 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL3A1-206ENST00000487010 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.36
COL3A1-206ENST00000487010 P3H3Q8IVL6 736 aa17.32■□□□□ 0.36
COL3A1-206ENST00000487010 CCER2I3L3R5 266 aa17.3■□□□□ 0.36
COL3A1-206ENST00000487010 EFCAB5A4FU69 1503 aa17.3■□□□□ 0.36
COL3A1-206ENST00000487010 FKBP8Q14318 412 aa17.3■□□□□ 0.36
COL3A1-206ENST00000487010 ATP1B4Q9UN42 357 aaPredicted RBP17.3■□□□□ 0.36
COL3A1-206ENST00000487010 CASKIN1Q8WXD9 1431 aa17.3■□□□□ 0.36
COL3A1-206ENST00000487010 AQRO60306 1485 aaKnown RBP eCLIP17.29■□□□□ 0.36
COL3A1-206ENST00000487010 FHOD3Q2V2M9 1422 aa17.29■□□□□ 0.36
COL3A1-206ENST00000487010 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
COL3A1-206ENST00000487010 BCANQ96GW7 911 aa17.27■□□□□ 0.36
COL3A1-206ENST00000487010 ANP32CO43423 234 aa17.25■□□□□ 0.35
COL3A1-206ENST00000487010 ANP32EQ9BTT0 268 aa17.25■□□□□ 0.35
COL3A1-206ENST00000487010 DNMBPQ6XZF7 1577 aa17.25■□□□□ 0.35
COL3A1-206ENST00000487010 HIRIP3Q9BW71 556 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-206ENST00000487010 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
COL3A1-206ENST00000487010 ABCA10Q8WWZ4 1543 aa17.24■□□□□ 0.35
COL3A1-206ENST00000487010 CC2D2AQ9P2K1 1620 aa17.24■□□□□ 0.35
COL3A1-206ENST00000487010 CTTNBP2Q8WZ74 1663 aa17.23■□□□□ 0.35
COL3A1-206ENST00000487010 FGD6Q6ZV73 1430 aa17.22■□□□□ 0.35
COL3A1-206ENST00000487010 CUL7Q14999 1698 aa17.21■□□□□ 0.35
COL3A1-206ENST00000487010 NEFLP07196 543 aa17.21■□□□□ 0.35
COL3A1-206ENST00000487010 TONSLQ96HA7 1378 aa17.2■□□□□ 0.34
COL3A1-206ENST00000487010 TOPBP1Q92547 1522 aa17.2■□□□□ 0.34
COL3A1-206ENST00000487010 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
COL3A1-206ENST00000487010 CCDC18Q5T9S5 1454 aa17.2■□□□□ 0.34
COL3A1-206ENST00000487010 FMN1Q68DA7 1419 aa17.19■□□□□ 0.34
COL3A1-206ENST00000487010 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
COL3A1-206ENST00000487010 TRIM52Q96A61 297 aa17.18■□□□□ 0.34
COL3A1-206ENST00000487010 HFM1A2PYH4 1435 aa17.18■□□□□ 0.34
COL3A1-206ENST00000487010 SNAPC4Q5SXM2 1469 aa17.17■□□□□ 0.34
COL3A1-206ENST00000487010 PTPN23Q9H3S7 1636 aa17.16■□□□□ 0.34
COL3A1-206ENST00000487010 PTPRKQ15262 1439 aa17.15■□□□□ 0.34
COL3A1-206ENST00000487010 MTUS2Q5JR59 1369 aa17.13■□□□□ 0.33
COL3A1-206ENST00000487010 LRRIQ1Q96JM4 1722 aa17.11■□□□□ 0.33
COL3A1-206ENST00000487010 NAIPQ13075 1403 aa17.11■□□□□ 0.33
COL3A1-206ENST00000487010 NESP48681 1621 aa17.11■□□□□ 0.33
COL3A1-206ENST00000487010 RBM19Q9Y4C8 960 aaKnown RBP17.1■□□□□ 0.33
COL3A1-206ENST00000487010 SAMD9Q5K651 1589 aa17.1■□□□□ 0.33
COL3A1-206ENST00000487010 MYOM3Q5VTT5 1437 aa17.09■□□□□ 0.33
COL3A1-206ENST00000487010 NCOA2Q15596 1464 aa17.09■□□□□ 0.33
COL3A1-206ENST00000487010 KDM5BQ9UGL1 1544 aa17.09■□□□□ 0.33
COL3A1-206ENST00000487010 SUPT6HQ7KZ85 1726 aaKnown RBP17.07■□□□□ 0.32
COL3A1-206ENST00000487010 GRIN2BQ13224 1484 aa17.07■□□□□ 0.32
COL3A1-206ENST00000487010 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
COL3A1-206ENST00000487010 EHBP1L1Q8N3D4 1523 aa17.04■□□□□ 0.32
COL3A1-206ENST00000487010 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
COL3A1-206ENST00000487010 ABCA5Q8WWZ7 1642 aa17.02■□□□□ 0.32
COL3A1-206ENST00000487010 UGGT2Q9NYU1 1516 aa17.01■□□□□ 0.31
COL3A1-206ENST00000487010 ARHGEF11O15085 1522 aa17■□□□□ 0.31
COL3A1-206ENST00000487010 LAMC3Q9Y6N6 1575 aa17■□□□□ 0.31
COL3A1-206ENST00000487010 TDRD9Q8NDG6 1382 aaKnown RBP17■□□□□ 0.31
COL3A1-206ENST00000487010 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL3A1-206ENST00000487010 GCC2Q8IWJ2 1684 aa16.98■□□□□ 0.31
COL3A1-206ENST00000487010 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
COL3A1-206ENST00000487010 WASHC2AQ641Q2 1341 aa16.98■□□□□ 0.31
COL3A1-206ENST00000487010 HECW1Q76N89 1606 aa16.98■□□□□ 0.31
COL3A1-206ENST00000487010 KIF21AQ7Z4S6 1674 aa16.97■□□□□ 0.31
COL3A1-206ENST00000487010 HSPA5P11021 654 aaKnown RBP16.97■□□□□ 0.31
COL3A1-206ENST00000487010 TCOF1Q13428 1488 aaKnown RBP16.97■□□□□ 0.31
COL3A1-206ENST00000487010 DENND4BO75064 1496 aaPredicted RBP16.95■□□□□ 0.3
COL3A1-206ENST00000487010 MAGI3Q5TCQ9 1506 aa16.95■□□□□ 0.3
COL3A1-206ENST00000487010 RRP7BPQ9NSQ0 103 aa16.94■□□□□ 0.3
COL3A1-206ENST00000487010 AKNAQ7Z591 1439 aa16.93■□□□□ 0.3
COL3A1-206ENST00000487010 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
COL3A1-206ENST00000487010 CHIC2Q9UKJ5 165 aa16.9■□□□□ 0.3
COL3A1-206ENST00000487010 KDM6BO15054 1643 aa16.9■□□□□ 0.3
COL3A1-206ENST00000487010 CNTLNQ9NXG0 1405 aa16.9■□□□□ 0.3
COL3A1-206ENST00000487010 ERICH6BQ5W0A0 696 aa16.89■□□□□ 0.29
COL3A1-206ENST00000487010 CDK11AQ9UQ88 783 aaPredicted RBP16.89■□□□□ 0.29
COL3A1-206ENST00000487010 MSH5O43196 834 aa16.88■□□□□ 0.29
COL3A1-206ENST00000487010 IRX6P78412 446 aaPredicted RBP16.88■□□□□ 0.29
COL3A1-206ENST00000487010 MPHOSPH9Q99550 1183 aa16.87■□□□□ 0.29
COL3A1-206ENST00000487010 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
COL3A1-206ENST00000487010 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
COL3A1-206ENST00000487010 MIA2Q96PC5 1412 aa16.86■□□□□ 0.29
COL3A1-206ENST00000487010 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
COL3A1-206ENST00000487010 L3MBTL2Q969R5 705 aa16.85■□□□□ 0.29
COL3A1-206ENST00000487010 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
COL3A1-206ENST00000487010 TARBP1Q13395 1621 aaKnown RBP16.84■□□□□ 0.29
COL3A1-206ENST00000487010 EPRSP07814 1512 aaKnown RBP16.84■□□□□ 0.29
COL3A1-206ENST00000487010 CCDC7Q96M83 1385 aa16.84■□□□□ 0.29
COL3A1-206ENST00000487010 C11orf95C9JLR9 678 aaPredicted RBP16.82■□□□□ 0.28
COL3A1-206ENST00000487010 PRKRIP1Q9H875 184 aaPredicted RBP16.82■□□□□ 0.28
COL3A1-206ENST00000487010 PPP4R2Q9NY27 417 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms