RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NISCHQ9Y2I1 1504 aa24.6■■□□□ 1.53
COL3A1-206ENST00000487010 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
COL3A1-206ENST00000487010 ZCCHC6Q5VYS8 1495 aaKnown RBP20.86■□□□□ 0.93
COL3A1-206ENST00000487010 SUPT5HO00267 1087 aaKnown RBP20.85■□□□□ 0.93
COL3A1-206ENST00000487010 CCDC180Q9P1Z9 1646 aa20.85■□□□□ 0.93
COL3A1-206ENST00000487010 CHIC1Q5VXU3 224 aa20.46■□□□□ 0.87
COL3A1-206ENST00000487010 MYO15BQ96JP2 1530 aa20.45■□□□□ 0.86
COL3A1-206ENST00000487010 HRCP23327 699 aa20.32■□□□□ 0.84
COL3A1-206ENST00000487010 DCAF8L2P0C7V8 631 aa20.3■□□□□ 0.84
COL3A1-206ENST00000487010 DCAF1Q9Y4B6 1507 aa20.2■□□□□ 0.83
COL3A1-206ENST00000487010 PCGF6Q9BYE7 350 aa20.08■□□□□ 0.81
COL3A1-206ENST00000487010 LOC105371045A0A1W2PR82 267 aa19.84■□□□□ 0.77
COL3A1-206ENST00000487010 PPARGC1BQ86YN6 1023 aaKnown RBP19.81■□□□□ 0.76
COL3A1-206ENST00000487010 ABCC9O60706 1549 aa19.74■□□□□ 0.75
COL3A1-206ENST00000487010 TRIM26Q12899 539 aaPredicted RBP19.67■□□□□ 0.74
COL3A1-206ENST00000487010 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
COL3A1-206ENST00000487010 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
COL3A1-206ENST00000487010 TRIM41Q8WV44 630 aa19.42■□□□□ 0.7
COL3A1-206ENST00000487010 RB1CC1Q8TDY2 1594 aa19.42■□□□□ 0.7
COL3A1-206ENST00000487010 ZEB1P37275 1124 aaPredicted RBP19.39■□□□□ 0.69
COL3A1-206ENST00000487010 FAM9AQ8IZU1 332 aaPredicted RBP19.24■□□□□ 0.67
COL3A1-206ENST00000487010 NACADO15069 1562 aa19.23■□□□□ 0.67
COL3A1-206ENST00000487010 CECR2Q9BXF3 1484 aa19.15■□□□□ 0.66
COL3A1-206ENST00000487010 MROH2BQ7Z745 1585 aa19.13■□□□□ 0.65
COL3A1-206ENST00000487010 WIZO95785 1651 aa19.06■□□□□ 0.64
COL3A1-206ENST00000487010 EHMT2Q96KQ7 1210 aa19.05■□□□□ 0.64
COL3A1-206ENST00000487010 BAZ1AQ9NRL2 1556 aaPredicted RBP18.97■□□□□ 0.63
COL3A1-206ENST00000487010 EIF4G1Q04637 1599 aaKnown RBP18.94■□□□□ 0.62
COL3A1-206ENST00000487010 SCAF1Q9H7N4 1312 aaKnown RBP18.89■□□□□ 0.61
COL3A1-206ENST00000487010 PELP1Q8IZL8 1130 aaKnown RBP18.88■□□□□ 0.61
COL3A1-206ENST00000487010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
COL3A1-206ENST00000487010 CCER1Q8TC90 406 aaPredicted RBP18.77■□□□□ 0.6
COL3A1-206ENST00000487010 TOP2AP11388 1531 aaKnown RBP18.76■□□□□ 0.59
COL3A1-206ENST00000487010 WRNQ14191 1432 aaPredicted RBP eCLIP18.74■□□□□ 0.59
COL3A1-206ENST00000487010 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
COL3A1-206ENST00000487010 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
COL3A1-206ENST00000487010 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
COL3A1-206ENST00000487010 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
COL3A1-206ENST00000487010 CEP162Q5TB80 1403 aa18.65■□□□□ 0.58
COL3A1-206ENST00000487010 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
COL3A1-206ENST00000487010 ACIN1Q9UKV3 1341 aaKnown RBP18.63■□□□□ 0.57
COL3A1-206ENST00000487010 TNIKQ9UKE5 1360 aa18.62■□□□□ 0.57
COL3A1-206ENST00000487010 SOGA1O94964 1423 aa18.59■□□□□ 0.57
COL3A1-206ENST00000487010 EEA1Q15075 1411 aa18.58■□□□□ 0.56
COL3A1-206ENST00000487010 DIEXFQ68CQ4 756 aaKnown RBP18.58■□□□□ 0.56
COL3A1-206ENST00000487010 NEUROD1Q13562 356 aa18.56■□□□□ 0.56
COL3A1-206ENST00000487010 CSRNP3Q8WYN3 585 aa18.52■□□□□ 0.56
COL3A1-206ENST00000487010 TTBK1Q5TCY1 1321 aaPredicted RBP18.52■□□□□ 0.56
COL3A1-206ENST00000487010 RUSC2Q8N2Y8 1516 aa18.49■□□□□ 0.55
COL3A1-206ENST00000487010 CENPBP07199 599 aaPredicted RBP18.47■□□□□ 0.55
COL3A1-206ENST00000487010 UBTFP17480 764 aaKnown RBP18.45■□□□□ 0.54
COL3A1-206ENST00000487010 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
COL3A1-206ENST00000487010 GTF3C3Q9Y5Q9 886 aa18.4■□□□□ 0.54
COL3A1-206ENST00000487010 ZNF316A6NFI3 1004 aaPredicted RBP18.38■□□□□ 0.53
COL3A1-206ENST00000487010 BICRAQ9NZM4 1560 aa18.35■□□□□ 0.53
COL3A1-206ENST00000487010 PEG3Q9GZU2 1588 aa18.33■□□□□ 0.52
COL3A1-206ENST00000487010 KIF21BO75037 1637 aa18.32■□□□□ 0.52
COL3A1-206ENST00000487010 CEP164Q9UPV0 1460 aa18.32■□□□□ 0.52
COL3A1-206ENST00000487010 PABPN1Q86U42 306 aaKnown RBP eCLIP18.32■□□□□ 0.52
COL3A1-206ENST00000487010 SYNJ1O43426 1573 aa18.28■□□□□ 0.52
COL3A1-206ENST00000487010 CLIP1P30622 1438 aa18.24■□□□□ 0.51
COL3A1-206ENST00000487010 HNRNPUL2Q1KMD3 747 aaKnown RBP18.21■□□□□ 0.51
COL3A1-206ENST00000487010 VPS8Q8N3P4 1428 aa18.21■□□□□ 0.51
COL3A1-206ENST00000487010 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
COL3A1-206ENST00000487010 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
COL3A1-206ENST00000487010 MIER1Q8N108 512 aa18.14■□□□□ 0.49
COL3A1-206ENST00000487010 RAPGEF2Q9Y4G8 1499 aa18.13■□□□□ 0.49
COL3A1-206ENST00000487010 APLP2Q06481 763 aa18.11■□□□□ 0.49
COL3A1-206ENST00000487010 YTHDC1Q96MU7 727 aaKnown RBP18.11■□□□□ 0.49
COL3A1-206ENST00000487010 TOP2BQ02880 1626 aa18.04■□□□□ 0.48
COL3A1-206ENST00000487010 MYT1Q01538 1121 aa18.01■□□□□ 0.47
COL3A1-206ENST00000487010 CLSPNQ9HAW4 1339 aa17.99■□□□□ 0.47
COL3A1-206ENST00000487010 BIVM-ERCC5R4GMW8 1640 aa17.98■□□□□ 0.47
COL3A1-206ENST00000487010 RANGAP1P46060 587 aaPredicted RBP17.97■□□□□ 0.47
COL3A1-206ENST00000487010 ERICH3Q5RHP9 1530 aa17.97■□□□□ 0.47
COL3A1-206ENST00000487010 PRXQ9BXM0 1461 aa17.94■□□□□ 0.46
COL3A1-206ENST00000487010 DHX57Q6P158 1386 aaKnown RBP17.94■□□□□ 0.46
COL3A1-206ENST00000487010 ARAP1Q96P48 1450 aa17.93■□□□□ 0.46
COL3A1-206ENST00000487010 KANK4Q5T7N3 995 aaPredicted RBP17.85■□□□□ 0.45
COL3A1-206ENST00000487010 RRBP1Q9P2E9 1410 aaKnown RBP17.85■□□□□ 0.45
COL3A1-206ENST00000487010 CUX2O14529 1486 aa17.8■□□□□ 0.44
COL3A1-206ENST00000487010 CUX1P39880 1505 aa17.8■□□□□ 0.44
COL3A1-206ENST00000487010 HMGXB3Q12766 1538 aa17.8■□□□□ 0.44
COL3A1-206ENST00000487010 NCAPD3P42695 1498 aa17.78■□□□□ 0.44
COL3A1-206ENST00000487010 KIF27Q86VH2 1401 aa17.77■□□□□ 0.44
COL3A1-206ENST00000487010 CCNB3Q8WWL7 1395 aa17.73■□□□□ 0.43
COL3A1-206ENST00000487010 ARHGAP35Q9NRY4 1499 aa17.72■□□□□ 0.43
COL3A1-206ENST00000487010 CFTRP13569 1480 aa17.68■□□□□ 0.42
COL3A1-206ENST00000487010 SUPT16HQ9Y5B9 1047 aaKnown RBP17.67■□□□□ 0.42
COL3A1-206ENST00000487010 MAP3K1Q13233 1512 aa17.62■□□□□ 0.41
COL3A1-206ENST00000487010 RAB3GAP2Q9H2M9 1393 aa17.61■□□□□ 0.41
COL3A1-206ENST00000487010 MAPKBP1O60336 1514 aa17.6■□□□□ 0.41
COL3A1-206ENST00000487010 PRDM2Q13029 1718 aa17.6■□□□□ 0.41
COL3A1-206ENST00000487010 ITGAEP38570 1179 aa17.6■□□□□ 0.41
COL3A1-206ENST00000487010 TIAM1Q13009 1591 aa17.59■□□□□ 0.41
COL3A1-206ENST00000487010 IGF1RP08069 1367 aa17.57■□□□□ 0.4
COL3A1-206ENST00000487010 SETD5Q9C0A6 1442 aa17.54■□□□□ 0.4
COL3A1-206ENST00000487010 LRRC9Q6ZRR7 1453 aa17.52■□□□□ 0.4
COL3A1-206ENST00000487010 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
COL3A1-206ENST00000487010 KCNH8Q96L42 1107 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms