RNA–Protein interactions for RNA: ENST00000477152.5

BRCA1-214, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,980 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-214ENST00000477152 RIMBP3Q9UFD9 1639 aa13.12□□□□□ -0.31
BRCA1-214ENST00000477152 MKRN4PQ13434 485 aaPredicted RBP13.11□□□□□ -0.31
BRCA1-214ENST00000477152 RTN4Q9NQC3 1192 aaKnown RBP13.11□□□□□ -0.31
BRCA1-214ENST00000477152 WDR97A6NE52 1622 aa13.1□□□□□ -0.31
BRCA1-214ENST00000477152 TARBP1Q13395 1621 aaKnown RBP13.1□□□□□ -0.31
BRCA1-214ENST00000477152 POLA2Q14181 598 aa13.09□□□□□ -0.31
BRCA1-214ENST00000477152 POLA1P09884 1462 aaPredicted RBP13.07□□□□□ -0.32
BRCA1-214ENST00000477152 CHD1O14646 1710 aa13.07□□□□□ -0.32
BRCA1-214ENST00000477152 ARHGEF11O15085 1522 aa13.07□□□□□ -0.32
BRCA1-214ENST00000477152 SOGA1O94964 1423 aa13.07□□□□□ -0.32
BRCA1-214ENST00000477152 AQRO60306 1485 aaKnown RBP eCLIP13.06□□□□□ -0.32
BRCA1-214ENST00000477152 FBLN2P98095 1184 aa13.06□□□□□ -0.32
BRCA1-214ENST00000477152 C1QBPQ07021 282 aaKnown RBP13.03□□□□□ -0.32
BRCA1-214ENST00000477152 FGD5Q6ZNL6 1462 aa13□□□□□ -0.33
BRCA1-214ENST00000477152 RAD54L2Q9Y4B4 1467 aa13□□□□□ -0.33
BRCA1-214ENST00000477152 ABCB7O75027 752 aa13□□□□□ -0.33
BRCA1-214ENST00000477152 CYB5RLQ6IPT4 315 aa13□□□□□ -0.33
BRCA1-214ENST00000477152 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
BRCA1-214ENST00000477152 MAGI1Q96QZ7 1491 aaPredicted RBP12.99□□□□□ -0.33
BRCA1-214ENST00000477152 TDRD9Q8NDG6 1382 aaKnown RBP12.98□□□□□ -0.33
BRCA1-214ENST00000477152 SYNJ1O43426 1573 aa12.98□□□□□ -0.33
BRCA1-214ENST00000477152 GRIN2BQ13224 1484 aa12.97□□□□□ -0.33
BRCA1-214ENST00000477152 SNAPC4Q5SXM2 1469 aa12.96□□□□□ -0.34
BRCA1-214ENST00000477152 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.34
BRCA1-214ENST00000477152 CUX1P39880 1505 aa12.95□□□□□ -0.34
BRCA1-214ENST00000477152 SYNJ2O15056 1496 aa12.92□□□□□ -0.34
BRCA1-214ENST00000477152 AMER1Q5JTC6 1135 aaPredicted RBP12.92□□□□□ -0.34
BRCA1-214ENST00000477152 PBRM1Q86U86 1689 aa12.91□□□□□ -0.34
BRCA1-214ENST00000477152 GAPVD1Q14C86 1478 aa12.91□□□□□ -0.34
BRCA1-214ENST00000477152 SUPT5HO00267 1087 aaKnown RBP12.9□□□□□ -0.34
BRCA1-214ENST00000477152 ARAP1Q96P48 1450 aa12.9□□□□□ -0.34
BRCA1-214ENST00000477152 CLASP1Q7Z460 1538 aa12.89□□□□□ -0.35
BRCA1-214ENST00000477152 ABCA10Q8WWZ4 1543 aa12.87□□□□□ -0.35
BRCA1-214ENST00000477152 WRNQ14191 1432 aaPredicted RBP eCLIP12.86□□□□□ -0.35
BRCA1-214ENST00000477152 ABCA5Q8WWZ7 1642 aa12.85□□□□□ -0.35
BRCA1-214ENST00000477152 BIVM-ERCC5R4GMW8 1640 aa12.8□□□□□ -0.36
BRCA1-214ENST00000477152 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
BRCA1-214ENST00000477152 DSG3P32926 999 aa12.79□□□□□ -0.36
BRCA1-214ENST00000477152 GRIN2AQ12879 1464 aa12.77□□□□□ -0.36
BRCA1-214ENST00000477152 FHAD1B1AJZ9 1412 aa12.76□□□□□ -0.37
BRCA1-214ENST00000477152 PROM2Q8N271 834 aa12.76□□□□□ -0.37
BRCA1-214ENST00000477152 ADAMTS12P58397 1594 aa12.75□□□□□ -0.37
BRCA1-214ENST00000477152 ERICH3Q5RHP9 1530 aa12.75□□□□□ -0.37
BRCA1-214ENST00000477152 NUP160Q12769 1436 aa12.71□□□□□ -0.37
BRCA1-214ENST00000477152 CEP170Q5SW79 1584 aa12.69□□□□□ -0.38
BRCA1-214ENST00000477152 ZBTB12Q9Y330 459 aaPredicted RBP12.68□□□□□ -0.38
BRCA1-214ENST00000477152 SHROOM2Q13796 1616 aa12.67□□□□□ -0.38
BRCA1-214ENST00000477152 FBXO3Q9UK99 471 aa12.67□□□□□ -0.38
BRCA1-214ENST00000477152 NPM1P06748 294 aaKnown RBP eCLIP12.63□□□□□ -0.39
BRCA1-214ENST00000477152 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
BRCA1-214ENST00000477152 PRG4Q92954 1404 aaPredicted RBP12.62□□□□□ -0.39
BRCA1-214ENST00000477152 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
BRCA1-214ENST00000477152 VASPP50552 380 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-214ENST00000477152 KIF27Q86VH2 1401 aa12.59□□□□□ -0.39
BRCA1-214ENST00000477152 CUL7Q14999 1698 aa12.59□□□□□ -0.39
BRCA1-214ENST00000477152 CACNB1Q02641 598 aaPredicted RBP12.58□□□□□ -0.4
BRCA1-214ENST00000477152 ZNF692Q9BU19 519 aaPredicted RBP12.57□□□□□ -0.4
BRCA1-214ENST00000477152 RUSC2Q8N2Y8 1516 aa12.57□□□□□ -0.4
BRCA1-214ENST00000477152 IFNLR1Q8IU57 520 aaPredicted RBP12.55□□□□□ -0.4
BRCA1-214ENST00000477152 KIAA0586Q9BVV6 1533 aa12.54□□□□□ -0.4
BRCA1-214ENST00000477152 KIF13AQ9H1H9 1805 aa12.52□□□□□ -0.41
BRCA1-214ENST00000477152 IGF1RP08069 1367 aa12.51□□□□□ -0.41
BRCA1-214ENST00000477152 MAPKBP1O60336 1514 aa12.49□□□□□ -0.41
BRCA1-214ENST00000477152 CARMIL2Q6F5E8 1435 aa12.49□□□□□ -0.41
BRCA1-214ENST00000477152 FAM69CQ0P6D2 419 aa12.48□□□□□ -0.41
BRCA1-214ENST00000477152 CARMIL1Q5VZK9 1371 aa12.48□□□□□ -0.41
BRCA1-214ENST00000477152 SLC24A1O60721 1099 aa12.47□□□□□ -0.41
BRCA1-214ENST00000477152 ABCC10Q5T3U5 1492 aa12.47□□□□□ -0.41
BRCA1-214ENST00000477152 SPDYE2BA6NHP3 402 aa12.45□□□□□ -0.42
BRCA1-214ENST00000477152 SPDYE6P0CI01 402 aa12.45□□□□□ -0.42
BRCA1-214ENST00000477152 SPDYE2Q495Y8 402 aa12.45□□□□□ -0.42
BRCA1-214ENST00000477152 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
BRCA1-214ENST00000477152 PTPRGP23470 1445 aa12.44□□□□□ -0.42
BRCA1-214ENST00000477152 ADCY10Q96PN6 1610 aa12.44□□□□□ -0.42
BRCA1-214ENST00000477152 TNIKQ9UKE5 1360 aa12.42□□□□□ -0.42
BRCA1-214ENST00000477152 IQGAP2Q13576 1575 aa12.42□□□□□ -0.42
BRCA1-214ENST00000477152 DIP2BQ9P265 1576 aa12.42□□□□□ -0.42
BRCA1-214ENST00000477152 FAM9AQ8IZU1 332 aaPredicted RBP12.38□□□□□ -0.43
BRCA1-214ENST00000477152 KDM6BO15054 1643 aa12.38□□□□□ -0.43
BRCA1-214ENST00000477152 PLB1Q6P1J6 1458 aa12.37□□□□□ -0.43
BRCA1-214ENST00000477152 RAPGEF2Q9Y4G8 1499 aa12.37□□□□□ -0.43
BRCA1-214ENST00000477152 TSPOAP1O95153 1857 aa12.37□□□□□ -0.43
BRCA1-214ENST00000477152 TTBK1Q5TCY1 1321 aaPredicted RBP12.37□□□□□ -0.43
BRCA1-214ENST00000477152 ABCC2Q92887 1545 aa12.37□□□□□ -0.43
BRCA1-214ENST00000477152 UHRF1BP1LA0JNW5 1464 aa12.35□□□□□ -0.43
BRCA1-214ENST00000477152 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
BRCA1-214ENST00000477152 GLI2P10070 1586 aa12.32□□□□□ -0.44
BRCA1-214ENST00000477152 UGGT2Q9NYU1 1516 aa12.32□□□□□ -0.44
BRCA1-214ENST00000477152 ASXL2Q76L83 1435 aa12.31□□□□□ -0.44
BRCA1-214ENST00000477152 GOLGA3Q08378 1498 aa12.3□□□□□ -0.44
BRCA1-214ENST00000477152 CTTNBP2Q8WZ74 1663 aa12.3□□□□□ -0.44
BRCA1-214ENST00000477152 PKD2Q13563 968 aa12.3□□□□□ -0.44
BRCA1-214ENST00000477152 KLHL34Q8N239 644 aa12.3□□□□□ -0.44
BRCA1-214ENST00000477152 DISP1Q96F81 1524 aa12.29□□□□□ -0.44
BRCA1-214ENST00000477152 TEX14Q8IWB6 1497 aa12.29□□□□□ -0.44
BRCA1-214ENST00000477152 KIAA0556O60303 1618 aa12.28□□□□□ -0.44
BRCA1-214ENST00000477152 KDM5BQ9UGL1 1544 aa12.27□□□□□ -0.44
BRCA1-214ENST00000477152 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
BRCA1-214ENST00000477152 STAG3Q9UJ98 1225 aa12.26□□□□□ -0.45
BRCA1-214ENST00000477152 ZCCHC11Q5TAX3 1644 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms