RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 PHLDB1Q86UU1 1377 aa26.44■■□□□ 1.82
HPS3-204ENST00000462030 PRDM2Q13029 1718 aa26.43■■□□□ 1.82
HPS3-204ENST00000462030 SIN3AQ96ST3 1273 aa26.41■■□□□ 1.82
HPS3-204ENST00000462030 DDX10Q13206 875 aaKnown RBP26.37■■□□□ 1.81
HPS3-204ENST00000462030 CARMIL1Q5VZK9 1371 aa26.36■■□□□ 1.81
HPS3-204ENST00000462030 FAM50AQ14320 339 aaKnown RBP26.36■■□□□ 1.81
HPS3-204ENST00000462030 CFAP43Q8NDM7 1665 aa26.34■■□□□ 1.81
HPS3-204ENST00000462030 PCF11O94913 1555 aaKnown RBP26.31■■□□□ 1.8
HPS3-204ENST00000462030 BCANQ96GW7 911 aa26.31■■□□□ 1.8
HPS3-204ENST00000462030 FGD5Q6ZNL6 1462 aa26.3■■□□□ 1.8
HPS3-204ENST00000462030 FHAD1B1AJZ9 1412 aa26.27■■□□□ 1.8
HPS3-204ENST00000462030 PPP1R15AO75807 674 aaPredicted RBP26.27■■□□□ 1.8
HPS3-204ENST00000462030 P3H3Q8IVL6 736 aa26.25■■□□□ 1.79
HPS3-204ENST00000462030 FKBP8Q14318 412 aa26.24■■□□□ 1.79
HPS3-204ENST00000462030 HIRIP3Q9BW71 556 aaPredicted RBP26.23■■□□□ 1.79
HPS3-204ENST00000462030 ATP1B4Q9UN42 357 aaPredicted RBP26.21■■□□□ 1.79
HPS3-204ENST00000462030 CADPSQ9ULU8 1353 aa26.18■■□□□ 1.78
HPS3-204ENST00000462030 TIMELESSQ9UNS1 1208 aa26.17■■□□□ 1.78
HPS3-204ENST00000462030 FHOD3Q2V2M9 1422 aa26.17■■□□□ 1.78
HPS3-204ENST00000462030 ANP32EQ9BTT0 268 aa26.16■■□□□ 1.78
HPS3-204ENST00000462030 FYCO1Q9BQS8 1478 aa26.11■■□□□ 1.77
HPS3-204ENST00000462030 TRIM52Q96A61 297 aa26.1■■□□□ 1.77
HPS3-204ENST00000462030 CCER2I3L3R5 266 aa26.09■■□□□ 1.77
HPS3-204ENST00000462030 ANP32CO43423 234 aa26.08■■□□□ 1.77
HPS3-204ENST00000462030 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.06■■□□□ 1.76
HPS3-204ENST00000462030 CASKIN1Q8WXD9 1431 aa26.06■■□□□ 1.76
HPS3-204ENST00000462030 EFCAB5A4FU69 1503 aa26.04■■□□□ 1.76
HPS3-204ENST00000462030 NEFLP07196 543 aa26.04■■□□□ 1.76
HPS3-204ENST00000462030 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.75
HPS3-204ENST00000462030 FGD6Q6ZV73 1430 aa26.01■■□□□ 1.75
HPS3-204ENST00000462030 RAD54L2Q9Y4B4 1467 aa26.01■■□□□ 1.75
HPS3-204ENST00000462030 TONSLQ96HA7 1378 aa26.01■■□□□ 1.75
HPS3-204ENST00000462030 CCDC18Q5T9S5 1454 aa26■■□□□ 1.75
HPS3-204ENST00000462030 CTTNBP2Q8WZ74 1663 aa25.97■■□□□ 1.75
HPS3-204ENST00000462030 FANCD2Q9BXW9 1451 aa25.97■■□□□ 1.75
HPS3-204ENST00000462030 PTPRKQ15262 1439 aa25.95■■□□□ 1.75
HPS3-204ENST00000462030 ABCA10Q8WWZ4 1543 aa25.95■■□□□ 1.74
HPS3-204ENST00000462030 PTPN23Q9H3S7 1636 aa25.93■■□□□ 1.74
HPS3-204ENST00000462030 RBM19Q9Y4C8 960 aaKnown RBP25.93■■□□□ 1.74
HPS3-204ENST00000462030 DNMBPQ6XZF7 1577 aa25.92■■□□□ 1.74
HPS3-204ENST00000462030 HFM1A2PYH4 1435 aa25.92■■□□□ 1.74
HPS3-204ENST00000462030 UACAQ9BZF9 1416 aa25.92■■□□□ 1.74
HPS3-204ENST00000462030 CC2D2AQ9P2K1 1620 aa25.92■■□□□ 1.74
HPS3-204ENST00000462030 SNAPC4Q5SXM2 1469 aa25.92■■□□□ 1.74
HPS3-204ENST00000462030 POLA1P09884 1462 aaPredicted RBP25.91■■□□□ 1.74
HPS3-204ENST00000462030 CUL7Q14999 1698 aa25.9■■□□□ 1.74
HPS3-204ENST00000462030 FMN1Q68DA7 1419 aa25.89■■□□□ 1.74
HPS3-204ENST00000462030 MTUS2Q5JR59 1369 aa25.88■■□□□ 1.73
HPS3-204ENST00000462030 LRRIQ1Q96JM4 1722 aa25.87■■□□□ 1.73
HPS3-204ENST00000462030 TOPBP1Q92547 1522 aa25.86■■□□□ 1.73
HPS3-204ENST00000462030 KDM5BQ9UGL1 1544 aa25.85■■□□□ 1.73
HPS3-204ENST00000462030 NAIPQ13075 1403 aa25.84■■□□□ 1.73
HPS3-204ENST00000462030 NCOA2Q15596 1464 aa25.8■■□□□ 1.72
HPS3-204ENST00000462030 MYOM3Q5VTT5 1437 aa25.78■■□□□ 1.72
HPS3-204ENST00000462030 SAMD9Q5K651 1589 aa25.76■■□□□ 1.71
HPS3-204ENST00000462030 HNRNPUQ00839 825 aaKnown RBP eCLIP25.75■■□□□ 1.71
HPS3-204ENST00000462030 GRIN2BQ13224 1484 aa25.73■■□□□ 1.71
HPS3-204ENST00000462030 SUPT6HQ7KZ85 1726 aaKnown RBP25.73■■□□□ 1.71
HPS3-204ENST00000462030 NESP48681 1621 aa25.72■■□□□ 1.71
HPS3-204ENST00000462030 WASHC2AQ641Q2 1341 aa25.69■■□□□ 1.7
HPS3-204ENST00000462030 IRX6P78412 446 aaPredicted RBP25.69■■□□□ 1.7
HPS3-204ENST00000462030 EHBP1L1Q8N3D4 1523 aa25.69■■□□□ 1.7
HPS3-204ENST00000462030 HSPA5P11021 654 aaKnown RBP25.67■■□□□ 1.7
HPS3-204ENST00000462030 THOC2Q8NI27 1593 aaKnown RBP25.66■■□□□ 1.7
HPS3-204ENST00000462030 UGGT2Q9NYU1 1516 aa25.66■■□□□ 1.7
HPS3-204ENST00000462030 RRP7BPQ9NSQ0 103 aa25.65■■□□□ 1.7
HPS3-204ENST00000462030 DENND4BO75064 1496 aaPredicted RBP25.65■■□□□ 1.7
HPS3-204ENST00000462030 MSH5O43196 834 aa25.64■■□□□ 1.7
HPS3-204ENST00000462030 MAGI3Q5TCQ9 1506 aa25.64■■□□□ 1.7
HPS3-204ENST00000462030 HECW1Q76N89 1606 aa25.62■■□□□ 1.69
HPS3-204ENST00000462030 GCC2Q8IWJ2 1684 aa25.62■■□□□ 1.69
HPS3-204ENST00000462030 CHIC2Q9UKJ5 165 aa25.62■■□□□ 1.69
HPS3-204ENST00000462030 TDRD9Q8NDG6 1382 aaKnown RBP25.62■■□□□ 1.69
HPS3-204ENST00000462030 ARHGEF11O15085 1522 aa25.62■■□□□ 1.69
HPS3-204ENST00000462030 ABCA5Q8WWZ7 1642 aa25.62■■□□□ 1.69
HPS3-204ENST00000462030 URB2Q14146 1524 aaKnown RBP25.6■■□□□ 1.69
HPS3-204ENST00000462030 KDM6BO15054 1643 aa25.6■■□□□ 1.69
HPS3-204ENST00000462030 BCL11AQ9H165 835 aa25.58■■□□□ 1.69
HPS3-204ENST00000462030 CCDC184Q52MB2 194 aa25.57■■□□□ 1.68
HPS3-204ENST00000462030 TCOF1Q13428 1488 aaKnown RBP25.56■■□□□ 1.68
HPS3-204ENST00000462030 CNTLNQ9NXG0 1405 aa25.55■■□□□ 1.68
HPS3-204ENST00000462030 GAPVD1Q14C86 1478 aa25.55■■□□□ 1.68
HPS3-204ENST00000462030 EIF4G2P78344 907 aaKnown RBP eCLIP25.55■■□□□ 1.68
HPS3-204ENST00000462030 KIF21AQ7Z4S6 1674 aa25.53■■□□□ 1.68
HPS3-204ENST00000462030 CDK11AQ9UQ88 783 aaPredicted RBP25.53■■□□□ 1.68
HPS3-204ENST00000462030 FANCIQ9NVI1 1328 aa25.49■■□□□ 1.67
HPS3-204ENST00000462030 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
HPS3-204ENST00000462030 C11orf95C9JLR9 678 aaPredicted RBP25.49■■□□□ 1.67
HPS3-204ENST00000462030 AKNAQ7Z591 1439 aa25.48■■□□□ 1.67
HPS3-204ENST00000462030 L3MBTL2Q969R5 705 aa25.48■■□□□ 1.67
HPS3-204ENST00000462030 MPHOSPH9Q99550 1183 aa25.47■■□□□ 1.67
HPS3-204ENST00000462030 FOXD1Q16676 465 aa25.47■■□□□ 1.67
HPS3-204ENST00000462030 NCOA1Q15788 1441 aa25.45■■□□□ 1.67
HPS3-204ENST00000462030 CCDC7Q96M83 1385 aa25.45■■□□□ 1.66
HPS3-204ENST00000462030 PRKRIP1Q9H875 184 aaPredicted RBP25.44■■□□□ 1.66
HPS3-204ENST00000462030 FAM9BQ8IZU0 186 aa25.42■■□□□ 1.66
HPS3-204ENST00000462030 ERICH6BQ5W0A0 696 aa25.42■■□□□ 1.66
HPS3-204ENST00000462030 PPP4R2Q9NY27 417 aa25.42■■□□□ 1.66
HPS3-204ENST00000462030 EPRSP07814 1512 aaKnown RBP25.41■■□□□ 1.66
HPS3-204ENST00000462030 CDK13Q14004 1512 aaKnown RBP25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms