RNA–Protein interactions for RNA: ENST00000454137.5

MSH6-205, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 725 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-205ENST00000454137 U3KPZ7 1027 aaPredicted RBP9.73□□□□□ -0.85
MSH6-205ENST00000454137 ERCC6Q03468 1493 aa9.72□□□□□ -0.85
MSH6-205ENST00000454137 GOLGA3Q08378 1498 aa9.72□□□□□ -0.85
MSH6-205ENST00000454137 PRXQ9BXM0 1461 aa9.72□□□□□ -0.85
MSH6-205ENST00000454137 APLP2Q06481 763 aa9.71□□□□□ -0.86
MSH6-205ENST00000454137 FKBP8Q14318 412 aa9.71□□□□□ -0.86
MSH6-205ENST00000454137 CUX2O14529 1486 aa9.71□□□□□ -0.86
MSH6-205ENST00000454137 ABCA5Q8WWZ7 1642 aa9.71□□□□□ -0.86
MSH6-205ENST00000454137 TNIKQ9UKE5 1360 aa9.7□□□□□ -0.86
MSH6-205ENST00000454137 IFT140Q96RY7 1462 aa9.7□□□□□ -0.86
MSH6-205ENST00000454137 CUL7Q14999 1698 aa9.69□□□□□ -0.86
MSH6-205ENST00000454137 RAD54L2Q9Y4B4 1467 aa9.68□□□□□ -0.86
MSH6-205ENST00000454137 IGF1RP08069 1367 aa9.68□□□□□ -0.86
MSH6-205ENST00000454137 ATF5Q9Y2D1 282 aaPredicted RBP9.66□□□□□ -0.86
MSH6-205ENST00000454137 GAPVD1Q14C86 1478 aa9.65□□□□□ -0.87
MSH6-205ENST00000454137 AMER1Q5JTC6 1135 aaPredicted RBP9.63□□□□□ -0.87
MSH6-205ENST00000454137 RAPGEF2Q9Y4G8 1499 aa9.63□□□□□ -0.87
MSH6-205ENST00000454137 PBRM1Q86U86 1689 aa9.63□□□□□ -0.87
MSH6-205ENST00000454137 CARMIL1Q5VZK9 1371 aa9.63□□□□□ -0.87
MSH6-205ENST00000454137 GRIN2BQ13224 1484 aa9.6□□□□□ -0.87
MSH6-205ENST00000454137 TDRD9Q8NDG6 1382 aaKnown RBP9.58□□□□□ -0.88
MSH6-205ENST00000454137 EIF4G3O43432 1585 aaKnown RBP9.58□□□□□ -0.88
MSH6-205ENST00000454137 FHAD1B1AJZ9 1412 aa9.57□□□□□ -0.88
MSH6-205ENST00000454137 CEP162Q5TB80 1403 aa9.57□□□□□ -0.88
MSH6-205ENST00000454137 ADAMTS12P58397 1594 aa9.56□□□□□ -0.88
MSH6-205ENST00000454137 MAGI1Q96QZ7 1491 aaPredicted RBP9.56□□□□□ -0.88
MSH6-205ENST00000454137 UBTFP17480 764 aaKnown RBP9.56□□□□□ -0.88
MSH6-205ENST00000454137 CTTNBP2Q8WZ74 1663 aa9.55□□□□□ -0.88
MSH6-205ENST00000454137 ZNF219Q9P2Y4 722 aaPredicted RBP9.55□□□□□ -0.88
MSH6-205ENST00000454137 ZNF608Q9ULD9 1512 aaPredicted RBP9.55□□□□□ -0.88
MSH6-205ENST00000454137 AQRO60306 1485 aaKnown RBP eCLIP9.54□□□□□ -0.88
MSH6-205ENST00000454137 HRCP23327 699 aa9.53□□□□□ -0.88
MSH6-205ENST00000454137 CLIP1P30622 1438 aa9.52□□□□□ -0.89
MSH6-205ENST00000454137 RTN4Q9NQC3 1192 aaKnown RBP9.51□□□□□ -0.89
MSH6-205ENST00000454137 EFCAB5A4FU69 1503 aa9.5□□□□□ -0.89
MSH6-205ENST00000454137 SYNJ2O15056 1496 aa9.49□□□□□ -0.89
MSH6-205ENST00000454137 SNAPC4Q5SXM2 1469 aa9.48□□□□□ -0.89
MSH6-205ENST00000454137 VPS8Q8N3P4 1428 aa9.47□□□□□ -0.89
MSH6-205ENST00000454137 GRIN2AQ12879 1464 aa9.47□□□□□ -0.89
MSH6-205ENST00000454137 ARHGAP35Q9NRY4 1499 aa9.46□□□□□ -0.9
MSH6-205ENST00000454137 SAMD9Q5K651 1589 aa9.46□□□□□ -0.9
MSH6-205ENST00000454137 KIAA0586Q9BVV6 1533 aa9.45□□□□□ -0.9
MSH6-205ENST00000454137 IQGAP2Q13576 1575 aa9.44□□□□□ -0.9
MSH6-205ENST00000454137 UGGT2Q9NYU1 1516 aa9.43□□□□□ -0.9
MSH6-205ENST00000454137 ARAP1Q96P48 1450 aa9.43□□□□□ -0.9
MSH6-205ENST00000454137 NUP160Q12769 1436 aa9.43□□□□□ -0.9
MSH6-205ENST00000454137 PCGF6Q9BYE7 350 aa9.42□□□□□ -0.9
MSH6-205ENST00000454137 MAP3K1Q13233 1512 aa9.41□□□□□ -0.9
MSH6-205ENST00000454137 CEP170Q5SW79 1584 aa9.39□□□□□ -0.91
MSH6-205ENST00000454137 CHMP7Q8WUX9 453 aaPredicted RBP9.39□□□□□ -0.91
MSH6-205ENST00000454137 FMN1Q68DA7 1419 aa9.39□□□□□ -0.91
MSH6-205ENST00000454137 FBLN2P98095 1184 aa9.38□□□□□ -0.91
MSH6-205ENST00000454137 CHD1O14646 1710 aa9.38□□□□□ -0.91
MSH6-205ENST00000454137 RNF39Q9H2S5 420 aa9.36□□□□□ -0.91
MSH6-205ENST00000454137 FBXO3Q9UK99 471 aa9.36□□□□□ -0.91
MSH6-205ENST00000454137 FYCO1Q9BQS8 1478 aa9.35□□□□□ -0.91
MSH6-205ENST00000454137 TRIM26Q12899 539 aaPredicted RBP9.35□□□□□ -0.91
MSH6-205ENST00000454137 CASKIN1Q8WXD9 1431 aa9.35□□□□□ -0.91
MSH6-205ENST00000454137 KIAA0556O60303 1618 aa9.34□□□□□ -0.91
MSH6-205ENST00000454137 SHROOM2Q13796 1616 aa9.34□□□□□ -0.91
MSH6-205ENST00000454137 SPDYE4A6NLX3 237 aa9.34□□□□□ -0.91
MSH6-205ENST00000454137 TRHP20396 242 aaPredicted RBP9.34□□□□□ -0.91
MSH6-205ENST00000454137 C1QBPQ07021 282 aaKnown RBP9.34□□□□□ -0.91
MSH6-205ENST00000454137 DISP1Q96F81 1524 aa9.33□□□□□ -0.92
MSH6-205ENST00000454137 CFAP43Q8NDM7 1665 aa9.32□□□□□ -0.92
MSH6-205ENST00000454137 RANGAP1P46060 587 aaPredicted RBP9.32□□□□□ -0.92
MSH6-205ENST00000454137 FHOD3Q2V2M9 1422 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 CARMIL2Q6F5E8 1435 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 SLC24A1O60721 1099 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 CAPN15O75808 1086 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 TIAM1Q13009 1591 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 CLASP1Q7Z460 1538 aa9.31□□□□□ -0.92
MSH6-205ENST00000454137 PCF11O94913 1555 aaKnown RBP9.3□□□□□ -0.92
MSH6-205ENST00000454137 PPARGC1BQ86YN6 1023 aaKnown RBP9.3□□□□□ -0.92
MSH6-205ENST00000454137 SPINK5Q9NQ38 1064 aaPredicted RBP9.3□□□□□ -0.92
MSH6-205ENST00000454137 POLA2Q14181 598 aa9.29□□□□□ -0.92
MSH6-205ENST00000454137 JPH4Q96JJ6 628 aa9.29□□□□□ -0.92
MSH6-205ENST00000454137 CCDC18Q5T9S5 1454 aa9.28□□□□□ -0.92
MSH6-205ENST00000454137 HECW1Q76N89 1606 aa9.28□□□□□ -0.92
MSH6-205ENST00000454137 MKRN4PQ13434 485 aaPredicted RBP9.28□□□□□ -0.92
MSH6-205ENST00000454137 ZBTB12Q9Y330 459 aaPredicted RBP9.28□□□□□ -0.92
MSH6-205ENST00000454137 LRRIQ1Q96JM4 1722 aa9.25□□□□□ -0.93
MSH6-205ENST00000454137 RAPGEF6Q8TEU7 1601 aa9.25□□□□□ -0.93
MSH6-205ENST00000454137 LRRC9Q6ZRR7 1453 aa9.25□□□□□ -0.93
MSH6-205ENST00000454137 PROM2Q8N271 834 aa9.24□□□□□ -0.93
MSH6-205ENST00000454137 PRG4Q92954 1404 aaPredicted RBP9.23□□□□□ -0.93
MSH6-205ENST00000454137 P3H3Q8IVL6 736 aa9.23□□□□□ -0.93
MSH6-205ENST00000454137 ABCA8O94911 1581 aa9.23□□□□□ -0.93
MSH6-205ENST00000454137 EPRSP07814 1512 aaKnown RBP9.22□□□□□ -0.93
MSH6-205ENST00000454137 ZEB1P37275 1124 aaPredicted RBP9.22□□□□□ -0.93
MSH6-205ENST00000454137 TTBK1Q5TCY1 1321 aaPredicted RBP9.21□□□□□ -0.94
MSH6-205ENST00000454137 EHBP1L1Q8N3D4 1523 aa9.21□□□□□ -0.94
MSH6-205ENST00000454137 RRBP1Q9P2E9 1410 aaKnown RBP9.2□□□□□ -0.94
MSH6-205ENST00000454137 NUP153P49790 1475 aaKnown RBP9.2□□□□□ -0.94
MSH6-205ENST00000454137 SUPT6HQ7KZ85 1726 aaKnown RBP9.19□□□□□ -0.94
MSH6-205ENST00000454137 KANK4Q5T7N3 995 aaPredicted RBP9.19□□□□□ -0.94
MSH6-205ENST00000454137 OSCARQ8IYS5 282 aa9.19□□□□□ -0.94
MSH6-205ENST00000454137 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.19□□□□□ -0.94
MSH6-205ENST00000454137 PTPRGP23470 1445 aa9.19□□□□□ -0.94
MSH6-205ENST00000454137 ARHGEF11O15085 1522 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms