RNA–Protein interactions for RNA: ENST00000454137.5

MSH6-205, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 725 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-205ENST00000454137 CHIC1Q5VXU3 224 aa15.38■□□□□ 0.05
MSH6-205ENST00000454137 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
MSH6-205ENST00000454137 NISCHQ9Y2I1 1504 aa13.79□□□□□ -0.2
MSH6-205ENST00000454137 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
MSH6-205ENST00000454137 SENP3Q9H4L4 574 aaPredicted RBP13.01□□□□□ -0.33
MSH6-205ENST00000454137 PLPPR3Q6T4P5 718 aa12.72□□□□□ -0.37
MSH6-205ENST00000454137 CCDC180Q9P1Z9 1646 aa12.15□□□□□ -0.47
MSH6-205ENST00000454137 FOXD1Q16676 465 aa11.93□□□□□ -0.5
MSH6-205ENST00000454137 ADRA2BP18089 450 aa11.79□□□□□ -0.52
MSH6-205ENST00000454137 PPP6R1Q9UPN7 881 aa11.76□□□□□ -0.53
MSH6-205ENST00000454137 ZCCHC6Q5VYS8 1495 aaKnown RBP11.57□□□□□ -0.56
MSH6-205ENST00000454137 DCAF1Q9Y4B6 1507 aa11.52□□□□□ -0.57
MSH6-205ENST00000454137 MYO15BQ96JP2 1530 aa11.44□□□□□ -0.58
MSH6-205ENST00000454137 PIAS4Q8N2W9 510 aaPredicted RBP11.39□□□□□ -0.59
MSH6-205ENST00000454137 KCNA4P22459 653 aa11.36□□□□□ -0.59
MSH6-205ENST00000454137 ABCC9O60706 1549 aa11.3□□□□□ -0.6
MSH6-205ENST00000454137 NACADO15069 1562 aa11.29□□□□□ -0.6
MSH6-205ENST00000454137 PPP4R3CPQ6ZMV5 832 aa11.21□□□□□ -0.61
MSH6-205ENST00000454137 RB1CC1Q8TDY2 1594 aa11.17□□□□□ -0.62
MSH6-205ENST00000454137 DCAF8L2P0C7V8 631 aa11.16□□□□□ -0.62
MSH6-205ENST00000454137 NCBP3Q53F19 620 aaKnown RBP11.12□□□□□ -0.63
MSH6-205ENST00000454137 EHMT2Q96KQ7 1210 aa11.04□□□□□ -0.64
MSH6-205ENST00000454137 SCRIBQ14160 1630 aa10.97□□□□□ -0.65
MSH6-205ENST00000454137 SHROOM4Q9ULL8 1493 aa10.96□□□□□ -0.65
MSH6-205ENST00000454137 MSH5O43196 834 aa10.95□□□□□ -0.66
MSH6-205ENST00000454137 SLC4A1APQ9BWU0 796 aaKnown RBP10.95□□□□□ -0.66
MSH6-205ENST00000454137 SCAF1Q9H7N4 1312 aaKnown RBP10.94□□□□□ -0.66
MSH6-205ENST00000454137 UNC13AQ9UPW8 1703 aa10.93□□□□□ -0.66
MSH6-205ENST00000454137 NPM3O75607 178 aaKnown RBP10.85□□□□□ -0.67
MSH6-205ENST00000454137 CNKSR2Q8WXI2 1034 aa10.85□□□□□ -0.67
MSH6-205ENST00000454137 BICRAQ9NZM4 1560 aa10.8□□□□□ -0.68
MSH6-205ENST00000454137 CSRNP3Q8WYN3 585 aa10.74□□□□□ -0.69
MSH6-205ENST00000454137 BAZ1AQ9NRL2 1556 aaPredicted RBP10.67□□□□□ -0.7
MSH6-205ENST00000454137 RSF1Q96T23 1441 aaPredicted RBP10.64□□□□□ -0.71
MSH6-205ENST00000454137 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
MSH6-205ENST00000454137 SMARCA4P51532 1647 aa10.61□□□□□ -0.71
MSH6-205ENST00000454137 MROH2BQ7Z745 1585 aa10.59□□□□□ -0.71
MSH6-205ENST00000454137 PABPN1Q86U42 306 aaKnown RBP eCLIP10.58□□□□□ -0.72
MSH6-205ENST00000454137 DNAJC5BQ9UF47 199 aa10.58□□□□□ -0.72
MSH6-205ENST00000454137 PEG3Q9GZU2 1588 aa10.56□□□□□ -0.72
MSH6-205ENST00000454137 SUPT5HO00267 1087 aaKnown RBP10.56□□□□□ -0.72
MSH6-205ENST00000454137 MAPK8IP2Q13387 824 aaPredicted RBP10.55□□□□□ -0.72
MSH6-205ENST00000454137 RNF216Q9NWF9 866 aaPredicted RBP10.54□□□□□ -0.72
MSH6-205ENST00000454137 WIZO95785 1651 aa10.49□□□□□ -0.73
MSH6-205ENST00000454137 SMARCA2P51531 1590 aa10.48□□□□□ -0.73
MSH6-205ENST00000454137 EIF4G1Q04637 1599 aaKnown RBP10.48□□□□□ -0.73
MSH6-205ENST00000454137 TOP2AP11388 1531 aaKnown RBP10.45□□□□□ -0.74
MSH6-205ENST00000454137 ATAD2BQ9ULI0 1458 aa10.42□□□□□ -0.74
MSH6-205ENST00000454137 DMRT2Q9Y5R5 561 aa10.42□□□□□ -0.74
MSH6-205ENST00000454137 ZBTB22O15209 634 aa10.41□□□□□ -0.74
MSH6-205ENST00000454137 FOXD4L1Q9NU39 408 aa10.41□□□□□ -0.74
MSH6-205ENST00000454137 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
MSH6-205ENST00000454137 NCAPD3P42695 1498 aa10.4□□□□□ -0.74
MSH6-205ENST00000454137 HOXD11P31277 338 aaPredicted RBP10.37□□□□□ -0.75
MSH6-205ENST00000454137 BAZ1BQ9UIG0 1483 aaKnown RBP10.35□□□□□ -0.75
MSH6-205ENST00000454137 CC2D2AQ9P2K1 1620 aa10.31□□□□□ -0.76
MSH6-205ENST00000454137 CCDC88BA6NC98 1476 aa10.29□□□□□ -0.76
MSH6-205ENST00000454137 PRDM2Q13029 1718 aa10.16□□□□□ -0.78
MSH6-205ENST00000454137 CFTRP13569 1480 aa10.13□□□□□ -0.79
MSH6-205ENST00000454137 SLC4A2P04920 1241 aa10.12□□□□□ -0.79
MSH6-205ENST00000454137 MYCNP04198 464 aaPredicted RBP10.08□□□□□ -0.8
MSH6-205ENST00000454137 CADPSQ9ULU8 1353 aa10.08□□□□□ -0.8
MSH6-205ENST00000454137 ATXN8OSP0DMR3 200 aa10.07□□□□□ -0.8
MSH6-205ENST00000454137 LAMC3Q9Y6N6 1575 aa10.06□□□□□ -0.8
MSH6-205ENST00000454137 TRIM41Q8WV44 630 aa10.01□□□□□ -0.81
MSH6-205ENST00000454137 BIVM-ERCC5R4GMW8 1640 aa10□□□□□ -0.81
MSH6-205ENST00000454137 WRNQ14191 1432 aaPredicted RBP eCLIP10□□□□□ -0.81
MSH6-205ENST00000454137 ABCC8Q09428 1581 aa9.99□□□□□ -0.81
MSH6-205ENST00000454137 TOP2BQ02880 1626 aa9.99□□□□□ -0.81
MSH6-205ENST00000454137 PDS5BQ9NTI5 1447 aa9.95□□□□□ -0.82
MSH6-205ENST00000454137 SYNJ1O43426 1573 aa9.95□□□□□ -0.82
MSH6-205ENST00000454137 FANCD2Q9BXW9 1451 aa9.94□□□□□ -0.82
MSH6-205ENST00000454137 EEA1Q15075 1411 aa9.93□□□□□ -0.82
MSH6-205ENST00000454137 DCAF8L1A6NGE4 600 aa9.92□□□□□ -0.82
MSH6-205ENST00000454137 CUX1P39880 1505 aa9.91□□□□□ -0.82
MSH6-205ENST00000454137 NESP48681 1621 aa9.9□□□□□ -0.82
MSH6-205ENST00000454137 DNMBPQ6XZF7 1577 aa9.9□□□□□ -0.82
MSH6-205ENST00000454137 CEP164Q9UPV0 1460 aa9.9□□□□□ -0.83
MSH6-205ENST00000454137 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.89□□□□□ -0.83
MSH6-205ENST00000454137 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.88□□□□□ -0.83
MSH6-205ENST00000454137 HNRNPUL2Q1KMD3 747 aaKnown RBP9.88□□□□□ -0.83
MSH6-205ENST00000454137 KIF21AQ7Z4S6 1674 aa9.87□□□□□ -0.83
MSH6-205ENST00000454137 TOPBP1Q92547 1522 aa9.84□□□□□ -0.83
MSH6-205ENST00000454137 SAMD1Q6SPF0 538 aaPredicted RBP9.83□□□□□ -0.84
MSH6-205ENST00000454137 URB2Q14146 1524 aaKnown RBP9.81□□□□□ -0.84
MSH6-205ENST00000454137 FGD5Q6ZNL6 1462 aa9.8□□□□□ -0.84
MSH6-205ENST00000454137 MRC2Q9UBG0 1479 aa9.8□□□□□ -0.84
MSH6-205ENST00000454137 SOGA1O94964 1423 aa9.8□□□□□ -0.84
MSH6-205ENST00000454137 POLA1P09884 1462 aaPredicted RBP9.79□□□□□ -0.84
MSH6-205ENST00000454137 WDR62O43379 1518 aa9.78□□□□□ -0.84
MSH6-205ENST00000454137 ABCA10Q8WWZ4 1543 aa9.78□□□□□ -0.84
MSH6-205ENST00000454137 KIF27Q86VH2 1401 aa9.78□□□□□ -0.84
MSH6-205ENST00000454137 WDR97A6NE52 1622 aa9.78□□□□□ -0.84
MSH6-205ENST00000454137 KIF21BO75037 1637 aa9.78□□□□□ -0.84
MSH6-205ENST00000454137 LOC105371045A0A1W2PR82 267 aa9.76□□□□□ -0.85
MSH6-205ENST00000454137 FAM9AQ8IZU1 332 aaPredicted RBP9.76□□□□□ -0.85
MSH6-205ENST00000454137 THOC2Q8NI27 1593 aaKnown RBP9.75□□□□□ -0.85
MSH6-205ENST00000454137 ERICH3Q5RHP9 1530 aa9.74□□□□□ -0.85
MSH6-205ENST00000454137 RUSC2Q8N2Y8 1516 aa9.74□□□□□ -0.85
MSH6-205ENST00000454137 TARBP1Q13395 1621 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms