RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 GRIN2BQ13224 1484 aa12.82□□□□□ -0.36
RFX3-206ENST00000442560 MAGI1Q96QZ7 1491 aaPredicted RBP12.8□□□□□ -0.36
RFX3-206ENST00000442560 WDR97A6NE52 1622 aa12.79□□□□□ -0.36
RFX3-206ENST00000442560 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
RFX3-206ENST00000442560 GAPVD1Q14C86 1478 aa12.78□□□□□ -0.36
RFX3-206ENST00000442560 CLASP1Q7Z460 1538 aa12.78□□□□□ -0.36
RFX3-206ENST00000442560 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
RFX3-206ENST00000442560 U3KPZ7 1027 aaPredicted RBP12.76□□□□□ -0.37
RFX3-206ENST00000442560 SYNJ1O43426 1573 aa12.76□□□□□ -0.37
RFX3-206ENST00000442560 CAPN15O75808 1086 aa12.75□□□□□ -0.37
RFX3-206ENST00000442560 ABCA10Q8WWZ4 1543 aa12.73□□□□□ -0.37
RFX3-206ENST00000442560 WRNQ14191 1432 aaPredicted RBP eCLIP12.7□□□□□ -0.38
RFX3-206ENST00000442560 PBRM1Q86U86 1689 aa12.67□□□□□ -0.38
RFX3-206ENST00000442560 ABCA5Q8WWZ7 1642 aa12.67□□□□□ -0.38
RFX3-206ENST00000442560 DSG3P32926 999 aa12.67□□□□□ -0.38
RFX3-206ENST00000442560 POTEHQ6S545 545 aa12.67□□□□□ -0.38
RFX3-206ENST00000442560 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
RFX3-206ENST00000442560 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
RFX3-206ENST00000442560 FHAD1B1AJZ9 1412 aa12.62□□□□□ -0.39
RFX3-206ENST00000442560 NUP160Q12769 1436 aa12.62□□□□□ -0.39
RFX3-206ENST00000442560 ERCC6L2Q5T890 1561 aa12.6□□□□□ -0.39
RFX3-206ENST00000442560 ADAMTS12P58397 1594 aa12.6□□□□□ -0.39
RFX3-206ENST00000442560 BIVM-ERCC5R4GMW8 1640 aa12.59□□□□□ -0.39
RFX3-206ENST00000442560 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
RFX3-206ENST00000442560 ERICH3Q5RHP9 1530 aa12.56□□□□□ -0.4
RFX3-206ENST00000442560 JPH4Q96JJ6 628 aa12.55□□□□□ -0.4
RFX3-206ENST00000442560 PRG4Q92954 1404 aaPredicted RBP12.53□□□□□ -0.4
RFX3-206ENST00000442560 SHROOM2Q13796 1616 aa12.49□□□□□ -0.41
RFX3-206ENST00000442560 ABCB7O75027 752 aa12.48□□□□□ -0.41
RFX3-206ENST00000442560 IGF1RP08069 1367 aa12.45□□□□□ -0.42
RFX3-206ENST00000442560 NPM1P06748 294 aaKnown RBP eCLIP12.45□□□□□ -0.42
RFX3-206ENST00000442560 SLC4A2P04920 1241 aa12.43□□□□□ -0.42
RFX3-206ENST00000442560 KCNA4P22459 653 aa12.43□□□□□ -0.42
RFX3-206ENST00000442560 KIF27Q86VH2 1401 aa12.43□□□□□ -0.42
RFX3-206ENST00000442560 FAM69CQ0P6D2 419 aa12.42□□□□□ -0.42
RFX3-206ENST00000442560 RUSC2Q8N2Y8 1516 aa12.42□□□□□ -0.42
RFX3-206ENST00000442560 KIAA0586Q9BVV6 1533 aa12.4□□□□□ -0.42
RFX3-206ENST00000442560 TTBK1Q5TCY1 1321 aaPredicted RBP12.38□□□□□ -0.43
RFX3-206ENST00000442560 CARMIL1Q5VZK9 1371 aa12.38□□□□□ -0.43
RFX3-206ENST00000442560 ABCC10Q5T3U5 1492 aa12.35□□□□□ -0.43
RFX3-206ENST00000442560 PTPRGP23470 1445 aa12.33□□□□□ -0.44
RFX3-206ENST00000442560 CUL7Q14999 1698 aa12.32□□□□□ -0.44
RFX3-206ENST00000442560 ADCY10Q96PN6 1610 aa12.32□□□□□ -0.44
RFX3-206ENST00000442560 KIF13AQ9H1H9 1805 aa12.32□□□□□ -0.44
RFX3-206ENST00000442560 MAPKBP1O60336 1514 aa12.32□□□□□ -0.44
RFX3-206ENST00000442560 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
RFX3-206ENST00000442560 CARMIL2Q6F5E8 1435 aa12.29□□□□□ -0.44
RFX3-206ENST00000442560 DIP2BQ9P265 1576 aa12.29□□□□□ -0.44
RFX3-206ENST00000442560 ZNF219Q9P2Y4 722 aaPredicted RBP12.27□□□□□ -0.45
RFX3-206ENST00000442560 IQGAP2Q13576 1575 aa12.23□□□□□ -0.45
RFX3-206ENST00000442560 ABCC2Q92887 1545 aa12.23□□□□□ -0.45
RFX3-206ENST00000442560 RAPGEF2Q9Y4G8 1499 aa12.22□□□□□ -0.45
RFX3-206ENST00000442560 ASXL2Q76L83 1435 aa12.22□□□□□ -0.45
RFX3-206ENST00000442560 UACAQ9BZF9 1416 aa12.22□□□□□ -0.45
RFX3-206ENST00000442560 DISP1Q96F81 1524 aa12.21□□□□□ -0.45
RFX3-206ENST00000442560 KDM6BO15054 1643 aa12.2□□□□□ -0.46
RFX3-206ENST00000442560 KDM4FA0A1W2PPD8 638 aa12.2□□□□□ -0.46
RFX3-206ENST00000442560 APLP2Q06481 763 aa12.2□□□□□ -0.46
RFX3-206ENST00000442560 UHRF1BP1LA0JNW5 1464 aa12.2□□□□□ -0.46
RFX3-206ENST00000442560 PLB1Q6P1J6 1458 aa12.2□□□□□ -0.46
RFX3-206ENST00000442560 UGGT2Q9NYU1 1516 aa12.16□□□□□ -0.46
RFX3-206ENST00000442560 TSPOAP1O95153 1857 aa12.16□□□□□ -0.46
RFX3-206ENST00000442560 GLI2P10070 1586 aa12.14□□□□□ -0.47
RFX3-206ENST00000442560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.14□□□□□ -0.47
RFX3-206ENST00000442560 HNRNPUL2Q1KMD3 747 aaKnown RBP12.14□□□□□ -0.47
RFX3-206ENST00000442560 KDM5BQ9UGL1 1544 aa12.14□□□□□ -0.47
RFX3-206ENST00000442560 EPRSP07814 1512 aaKnown RBP12.13□□□□□ -0.47
RFX3-206ENST00000442560 KIAA0556O60303 1618 aa12.13□□□□□ -0.47
RFX3-206ENST00000442560 COL17A1Q9UMD9 1497 aaPredicted RBP12.11□□□□□ -0.47
RFX3-206ENST00000442560 SAMD1Q6SPF0 538 aaPredicted RBP12.09□□□□□ -0.47
RFX3-206ENST00000442560 KCNH8Q96L42 1107 aa12.09□□□□□ -0.47
RFX3-206ENST00000442560 PRXQ9BXM0 1461 aa12.08□□□□□ -0.47
RFX3-206ENST00000442560 ZCCHC11Q5TAX3 1644 aaKnown RBP12.08□□□□□ -0.48
RFX3-206ENST00000442560 PPRC1Q5VV67 1664 aaKnown RBP12.08□□□□□ -0.48
RFX3-206ENST00000442560 P3H3Q8IVL6 736 aa12.08□□□□□ -0.48
RFX3-206ENST00000442560 GOLGA3Q08378 1498 aa12.08□□□□□ -0.48
RFX3-206ENST00000442560 WDR7Q9Y4E6 1490 aa12.07□□□□□ -0.48
RFX3-206ENST00000442560 TEX14Q8IWB6 1497 aa12.06□□□□□ -0.48
RFX3-206ENST00000442560 ARID3CA6NKF2 412 aa12.05□□□□□ -0.48
RFX3-206ENST00000442560 MAP3K4Q9Y6R4 1608 aa12.04□□□□□ -0.48
RFX3-206ENST00000442560 CD109Q6YHK3 1445 aa12.03□□□□□ -0.48
RFX3-206ENST00000442560 ADGRL1O94910 1474 aa12.03□□□□□ -0.48
RFX3-206ENST00000442560 FAM9AQ8IZU1 332 aaPredicted RBP12.03□□□□□ -0.48
RFX3-206ENST00000442560 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
RFX3-206ENST00000442560 ABCA8O94911 1581 aa12.02□□□□□ -0.49
RFX3-206ENST00000442560 POLA2Q14181 598 aa12.02□□□□□ -0.49
RFX3-206ENST00000442560 CTTNBP2Q8WZ74 1663 aa12.01□□□□□ -0.49
RFX3-206ENST00000442560 RBM42Q9BTD8 480 aaKnown RBP12□□□□□ -0.49
RFX3-206ENST00000442560 RANGAP1P46060 587 aaPredicted RBP11.99□□□□□ -0.49
RFX3-206ENST00000442560 MAGI3Q5TCQ9 1506 aa11.99□□□□□ -0.49
RFX3-206ENST00000442560 ATP10BO94823 1461 aa11.97□□□□□ -0.49
RFX3-206ENST00000442560 CHRDL2Q6WN34 429 aa11.97□□□□□ -0.49
RFX3-206ENST00000442560 CFAP43Q8NDM7 1665 aa11.94□□□□□ -0.5
RFX3-206ENST00000442560 RAPGEF3O95398 923 aa11.9□□□□□ -0.5
RFX3-206ENST00000442560 EEA1Q15075 1411 aa11.9□□□□□ -0.5
RFX3-206ENST00000442560 ILDR1Q86SU0 546 aaPredicted RBP11.9□□□□□ -0.5
RFX3-206ENST00000442560 SAMD9Q5K651 1589 aa11.89□□□□□ -0.51
RFX3-206ENST00000442560 FHOD3Q2V2M9 1422 aa11.89□□□□□ -0.51
RFX3-206ENST00000442560 ARAP3Q8WWN8 1544 aa11.89□□□□□ -0.51
RFX3-206ENST00000442560 MYCNP04198 464 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms