RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 AEBP2Q6ZN18 517 aaPredicted RBP21.32■■□□□ 1
RFX3-206ENST00000442560 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
RFX3-206ENST00000442560 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
RFX3-206ENST00000442560 PHF23Q9BUL5 403 aaPredicted RBP17.91■□□□□ 0.46
RFX3-206ENST00000442560 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
RFX3-206ENST00000442560 FOXD1Q16676 465 aa17.02■□□□□ 0.32
RFX3-206ENST00000442560 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
RFX3-206ENST00000442560 ABCC9O60706 1549 aa16.06■□□□□ 0.16
RFX3-206ENST00000442560 MSH5O43196 834 aa15.93■□□□□ 0.14
RFX3-206ENST00000442560 CCDC180Q9P1Z9 1646 aa15.86■□□□□ 0.13
RFX3-206ENST00000442560 PIAS4Q8N2W9 510 aaPredicted RBP15.84■□□□□ 0.13
RFX3-206ENST00000442560 PPP6R1Q9UPN7 881 aa15.71■□□□□ 0.11
RFX3-206ENST00000442560 ADRA2BP18089 450 aa15.67■□□□□ 0.1
RFX3-206ENST00000442560 PLPPR3Q6T4P5 718 aa15.64■□□□□ 0.09
RFX3-206ENST00000442560 RB1CC1Q8TDY2 1594 aa15.19■□□□□ 0.02
RFX3-206ENST00000442560 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
RFX3-206ENST00000442560 DNAJC5BQ9UF47 199 aa15.16■□□□□ 0.02
RFX3-206ENST00000442560 NACADO15069 1562 aa15.07■□□□□ 0
RFX3-206ENST00000442560 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
RFX3-206ENST00000442560 MYO15BQ96JP2 1530 aa14.83□□□□□ -0.04
RFX3-206ENST00000442560 BICRAQ9NZM4 1560 aa14.76□□□□□ -0.05
RFX3-206ENST00000442560 UNC13AQ9UPW8 1703 aa14.75□□□□□ -0.05
RFX3-206ENST00000442560 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
RFX3-206ENST00000442560 DCAF1Q9Y4B6 1507 aa14.63□□□□□ -0.07
RFX3-206ENST00000442560 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
RFX3-206ENST00000442560 MAPK8IP2Q13387 824 aaPredicted RBP14.53□□□□□ -0.08
RFX3-206ENST00000442560 SHROOM4Q9ULL8 1493 aa14.51□□□□□ -0.09
RFX3-206ENST00000442560 CECR2Q9BXF3 1484 aa14.46□□□□□ -0.09
RFX3-206ENST00000442560 CC2D2AQ9P2K1 1620 aa14.44□□□□□ -0.1
RFX3-206ENST00000442560 EIF4G1Q04637 1599 aaKnown RBP14.41□□□□□ -0.1
RFX3-206ENST00000442560 DMRT2Q9Y5R5 561 aa14.31□□□□□ -0.12
RFX3-206ENST00000442560 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.15
RFX3-206ENST00000442560 CACNB1Q02641 598 aaPredicted RBP14.03□□□□□ -0.16
RFX3-206ENST00000442560 DCAF8L1A6NGE4 600 aa13.97□□□□□ -0.17
RFX3-206ENST00000442560 NCAPD3P42695 1498 aa13.96□□□□□ -0.17
RFX3-206ENST00000442560 DNAJC5Q9H3Z4 198 aa13.93□□□□□ -0.18
RFX3-206ENST00000442560 ATAD2BQ9ULI0 1458 aa13.92□□□□□ -0.18
RFX3-206ENST00000442560 ERCC6Q03468 1493 aa13.86□□□□□ -0.19
RFX3-206ENST00000442560 SMARCA4P51532 1647 aa13.83□□□□□ -0.2
RFX3-206ENST00000442560 SMARCA2P51531 1590 aa13.83□□□□□ -0.2
RFX3-206ENST00000442560 CUX2O14529 1486 aa13.81□□□□□ -0.2
RFX3-206ENST00000442560 HMGXB3Q12766 1538 aa13.8□□□□□ -0.2
RFX3-206ENST00000442560 BAZ1AQ9NRL2 1556 aaPredicted RBP13.78□□□□□ -0.2
RFX3-206ENST00000442560 NESP48681 1621 aa13.78□□□□□ -0.2
RFX3-206ENST00000442560 BAZ1BQ9UIG0 1483 aaKnown RBP13.77□□□□□ -0.21
RFX3-206ENST00000442560 PPP4R3CPQ6ZMV5 832 aa13.73□□□□□ -0.21
RFX3-206ENST00000442560 MROH2BQ7Z745 1585 aa13.71□□□□□ -0.21
RFX3-206ENST00000442560 PEG3Q9GZU2 1588 aa13.68□□□□□ -0.22
RFX3-206ENST00000442560 RNF39Q9H2S5 420 aa13.61□□□□□ -0.23
RFX3-206ENST00000442560 LAMC3Q9Y6N6 1575 aa13.61□□□□□ -0.23
RFX3-206ENST00000442560 HOXD11P31277 338 aaPredicted RBP13.6□□□□□ -0.23
RFX3-206ENST00000442560 PDS5BQ9NTI5 1447 aa13.59□□□□□ -0.23
RFX3-206ENST00000442560 THOC2Q8NI27 1593 aaKnown RBP13.57□□□□□ -0.24
RFX3-206ENST00000442560 CADPSQ9ULU8 1353 aa13.56□□□□□ -0.24
RFX3-206ENST00000442560 WIZO95785 1651 aa13.5□□□□□ -0.25
RFX3-206ENST00000442560 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
RFX3-206ENST00000442560 CNKSR2Q8WXI2 1034 aa13.48□□□□□ -0.25
RFX3-206ENST00000442560 MRC2Q9UBG0 1479 aa13.46□□□□□ -0.25
RFX3-206ENST00000442560 RSF1Q96T23 1441 aaPredicted RBP13.43□□□□□ -0.26
RFX3-206ENST00000442560 RNF216Q9NWF9 866 aaPredicted RBP13.43□□□□□ -0.26
RFX3-206ENST00000442560 FANCD2Q9BXW9 1451 aa13.39□□□□□ -0.27
RFX3-206ENST00000442560 CEP164Q9UPV0 1460 aa13.39□□□□□ -0.27
RFX3-206ENST00000442560 WDR62O43379 1518 aa13.39□□□□□ -0.27
RFX3-206ENST00000442560 CFTRP13569 1480 aa13.36□□□□□ -0.27
RFX3-206ENST00000442560 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
RFX3-206ENST00000442560 TOP2AP11388 1531 aaKnown RBP13.34□□□□□ -0.27
RFX3-206ENST00000442560 C1QBPQ07021 282 aaKnown RBP13.33□□□□□ -0.28
RFX3-206ENST00000442560 URB2Q14146 1524 aaKnown RBP13.28□□□□□ -0.28
RFX3-206ENST00000442560 OSCARQ8IYS5 282 aa13.25□□□□□ -0.29
RFX3-206ENST00000442560 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
RFX3-206ENST00000442560 ZNF608Q9ULD9 1512 aaPredicted RBP13.13□□□□□ -0.31
RFX3-206ENST00000442560 IFT140Q96RY7 1462 aa13.13□□□□□ -0.31
RFX3-206ENST00000442560 TOPBP1Q92547 1522 aa13.12□□□□□ -0.31
RFX3-206ENST00000442560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.11□□□□□ -0.317e-6■□□□□ 10.8
RFX3-206ENST00000442560 ABCC8Q09428 1581 aa13.07□□□□□ -0.32
RFX3-206ENST00000442560 PRDM2Q13029 1718 aa13.06□□□□□ -0.32
RFX3-206ENST00000442560 DNMBPQ6XZF7 1577 aa13.03□□□□□ -0.32
RFX3-206ENST00000442560 AQRO60306 1485 aaKnown RBP eCLIP13.03□□□□□ -0.32
RFX3-206ENST00000442560 NCBP3Q53F19 620 aaKnown RBP13.02□□□□□ -0.33
RFX3-206ENST00000442560 FBLN2P98095 1184 aa13□□□□□ -0.33
RFX3-206ENST00000442560 RIMBP3CA6NJZ7 1639 aa12.99□□□□□ -0.33
RFX3-206ENST00000442560 RIMBP3BA6NNM3 1639 aa12.99□□□□□ -0.33
RFX3-206ENST00000442560 RIMBP3Q9UFD9 1639 aa12.99□□□□□ -0.33
RFX3-206ENST00000442560 EIF4G3O43432 1585 aaKnown RBP12.99□□□□□ -0.33
RFX3-206ENST00000442560 POLA1P09884 1462 aaPredicted RBP12.98□□□□□ -0.33
RFX3-206ENST00000442560 ARHGEF11O15085 1522 aa12.98□□□□□ -0.33
RFX3-206ENST00000442560 RAD54L2Q9Y4B4 1467 aa12.97□□□□□ -0.33
RFX3-206ENST00000442560 CYB5RLQ6IPT4 315 aa12.97□□□□□ -0.33
RFX3-206ENST00000442560 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
RFX3-206ENST00000442560 TARBP1Q13395 1621 aaKnown RBP12.96□□□□□ -0.33
RFX3-206ENST00000442560 SOGA1O94964 1423 aa12.96□□□□□ -0.34
RFX3-206ENST00000442560 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
RFX3-206ENST00000442560 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
RFX3-206ENST00000442560 SUPT5HO00267 1087 aaKnown RBP12.88□□□□□ -0.35
RFX3-206ENST00000442560 CHMP7Q8WUX9 453 aaPredicted RBP12.88□□□□□ -0.35
RFX3-206ENST00000442560 SNAPC4Q5SXM2 1469 aa12.87□□□□□ -0.35
RFX3-206ENST00000442560 CHD1O14646 1710 aa12.87□□□□□ -0.35
RFX3-206ENST00000442560 CUX1P39880 1505 aa12.87□□□□□ -0.35
RFX3-206ENST00000442560 ARAP1Q96P48 1450 aa12.86□□□□□ -0.35
RFX3-206ENST00000442560 TRHP20396 242 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms