RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MYCNP04198 464 aaPredicted RBP13.91□□□□□ -0.18
VPS50-204ENST00000438395 DSG3P32926 999 aa13.91□□□□□ -0.18
VPS50-204ENST00000438395 FOXD4L1Q9NU39 408 aa13.91□□□□□ -0.18
VPS50-204ENST00000438395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.9□□□□□ -0.18
VPS50-204ENST00000438395 ZBTB22O15209 634 aa13.9□□□□□ -0.18
VPS50-204ENST00000438395 HNRNPUL2Q1KMD3 747 aaKnown RBP13.9□□□□□ -0.18
VPS50-204ENST00000438395 CHD1O14646 1710 aa13.9□□□□□ -0.18
VPS50-204ENST00000438395 WDR97A6NE52 1622 aa13.9□□□□□ -0.19
VPS50-204ENST00000438395 CUX1P39880 1505 aa13.9□□□□□ -0.19
VPS50-204ENST00000438395 SNAPC4Q5SXM2 1469 aa13.89□□□□□ -0.19
VPS50-204ENST00000438395 CYB5RLQ6IPT4 315 aa13.89□□□□□ -0.19
VPS50-204ENST00000438395 CHMP7Q8WUX9 453 aaPredicted RBP13.89□□□□□ -0.19
VPS50-204ENST00000438395 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
VPS50-204ENST00000438395 MAGI1Q96QZ7 1491 aaPredicted RBP13.87□□□□□ -0.19
VPS50-204ENST00000438395 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
VPS50-204ENST00000438395 ABCB7O75027 752 aa13.83□□□□□ -0.2
VPS50-204ENST00000438395 SYNJ1O43426 1573 aa13.83□□□□□ -0.2
VPS50-204ENST00000438395 APLP2Q06481 763 aa13.82□□□□□ -0.2
VPS50-204ENST00000438395 SYNJ2O15056 1496 aa13.81□□□□□ -0.2
VPS50-204ENST00000438395 ARAP1Q96P48 1450 aa13.81□□□□□ -0.2
VPS50-204ENST00000438395 GAPVD1Q14C86 1478 aa13.8□□□□□ -0.2
VPS50-204ENST00000438395 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
VPS50-204ENST00000438395 WRNQ14191 1432 aaPredicted RBP eCLIP13.78□□□□□ -0.2
VPS50-204ENST00000438395 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
VPS50-204ENST00000438395 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
VPS50-204ENST00000438395 PBRM1Q86U86 1689 aa13.72□□□□□ -0.21
VPS50-204ENST00000438395 ABCA5Q8WWZ7 1642 aa13.72□□□□□ -0.21
VPS50-204ENST00000438395 ATF5Q9Y2D1 282 aaPredicted RBP13.71□□□□□ -0.21
VPS50-204ENST00000438395 TOP2BQ02880 1626 aa13.68□□□□□ -0.22
VPS50-204ENST00000438395 GRIN2AQ12879 1464 aa13.67□□□□□ -0.22
VPS50-204ENST00000438395 BIVM-ERCC5R4GMW8 1640 aa13.65□□□□□ -0.22
VPS50-204ENST00000438395 ADAMTS12P58397 1594 aa13.65□□□□□ -0.22
VPS50-204ENST00000438395 FHAD1B1AJZ9 1412 aa13.64□□□□□ -0.23
VPS50-204ENST00000438395 ERICH3Q5RHP9 1530 aa13.61□□□□□ -0.23
VPS50-204ENST00000438395 NUP160Q12769 1436 aa13.6□□□□□ -0.23
VPS50-204ENST00000438395 POLA2Q14181 598 aa13.58□□□□□ -0.24
VPS50-204ENST00000438395 CEP170Q5SW79 1584 aa13.58□□□□□ -0.24
VPS50-204ENST00000438395 ERCC6L2Q5T890 1561 aa13.53□□□□□ -0.24
VPS50-204ENST00000438395 PRG4Q92954 1404 aaPredicted RBP13.51□□□□□ -0.25
VPS50-204ENST00000438395 SHROOM2Q13796 1616 aa13.5□□□□□ -0.25
VPS50-204ENST00000438395 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
VPS50-204ENST00000438395 JPH4Q96JJ6 628 aa13.49□□□□□ -0.25
VPS50-204ENST00000438395 RUSC2Q8N2Y8 1516 aa13.45□□□□□ -0.26
VPS50-204ENST00000438395 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS50-204ENST00000438395 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
VPS50-204ENST00000438395 CSRNP3Q8WYN3 585 aa13.42□□□□□ -0.26
VPS50-204ENST00000438395 IGF1RP08069 1367 aa13.42□□□□□ -0.26
VPS50-204ENST00000438395 CUL7Q14999 1698 aa13.41□□□□□ -0.26
VPS50-204ENST00000438395 KIAA0586Q9BVV6 1533 aa13.41□□□□□ -0.26
VPS50-204ENST00000438395 ATXN8OSP0DMR3 200 aa13.37□□□□□ -0.27
VPS50-204ENST00000438395 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
VPS50-204ENST00000438395 CARMIL2Q6F5E8 1435 aa13.34□□□□□ -0.27
VPS50-204ENST00000438395 FAM69CQ0P6D2 419 aa13.34□□□□□ -0.27
VPS50-204ENST00000438395 TTBK1Q5TCY1 1321 aaPredicted RBP13.34□□□□□ -0.27
VPS50-204ENST00000438395 PTPRGP23470 1445 aa13.32□□□□□ -0.28
VPS50-204ENST00000438395 MAPKBP1O60336 1514 aa13.32□□□□□ -0.28
VPS50-204ENST00000438395 ABCC10Q5T3U5 1492 aa13.31□□□□□ -0.28
VPS50-204ENST00000438395 ADCY10Q96PN6 1610 aa13.3□□□□□ -0.28
VPS50-204ENST00000438395 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
VPS50-204ENST00000438395 IQGAP2Q13576 1575 aa13.28□□□□□ -0.28
VPS50-204ENST00000438395 KIF13AQ9H1H9 1805 aa13.25□□□□□ -0.29
VPS50-204ENST00000438395 DIP2BQ9P265 1576 aa13.25□□□□□ -0.29
VPS50-204ENST00000438395 RAPGEF2Q9Y4G8 1499 aa13.24□□□□□ -0.29
VPS50-204ENST00000438395 ABCC2Q92887 1545 aa13.23□□□□□ -0.29
VPS50-204ENST00000438395 PLB1Q6P1J6 1458 aa13.2□□□□□ -0.3
VPS50-204ENST00000438395 UACAQ9BZF9 1416 aa13.2□□□□□ -0.3
VPS50-204ENST00000438395 KDM6BO15054 1643 aa13.18□□□□□ -0.3
VPS50-204ENST00000438395 ZBTB12Q9Y330 459 aaPredicted RBP13.18□□□□□ -0.3
VPS50-204ENST00000438395 ASXL2Q76L83 1435 aa13.18□□□□□ -0.3
VPS50-204ENST00000438395 UHRF1BP1LA0JNW5 1464 aa13.17□□□□□ -0.3
VPS50-204ENST00000438395 DISP1Q96F81 1524 aa13.17□□□□□ -0.3
VPS50-204ENST00000438395 UGGT2Q9NYU1 1516 aa13.17□□□□□ -0.3
VPS50-204ENST00000438395 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
VPS50-204ENST00000438395 FAM9AQ8IZU1 332 aaPredicted RBP13.14□□□□□ -0.31
VPS50-204ENST00000438395 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
VPS50-204ENST00000438395 KIAA0556O60303 1618 aa13.13□□□□□ -0.31
VPS50-204ENST00000438395 TSPOAP1O95153 1857 aa13.12□□□□□ -0.31
VPS50-204ENST00000438395 KDM5BQ9UGL1 1544 aa13.11□□□□□ -0.31
VPS50-204ENST00000438395 GLI2P10070 1586 aa13.1□□□□□ -0.31
VPS50-204ENST00000438395 TEX14Q8IWB6 1497 aa13.09□□□□□ -0.31
VPS50-204ENST00000438395 EPRSP07814 1512 aaKnown RBP13.08□□□□□ -0.32
VPS50-204ENST00000438395 PRXQ9BXM0 1461 aa13.07□□□□□ -0.32
VPS50-204ENST00000438395 CTTNBP2Q8WZ74 1663 aa13.07□□□□□ -0.32
VPS50-204ENST00000438395 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
VPS50-204ENST00000438395 MKRN4PQ13434 485 aaPredicted RBP13.06□□□□□ -0.32
VPS50-204ENST00000438395 ZCCHC11Q5TAX3 1644 aaKnown RBP13.06□□□□□ -0.32
VPS50-204ENST00000438395 KCNH8Q96L42 1107 aa13.01□□□□□ -0.33
VPS50-204ENST00000438395 MAP3K4Q9Y6R4 1608 aa13.01□□□□□ -0.33
VPS50-204ENST00000438395 ABCA8O94911 1581 aa13□□□□□ -0.33
VPS50-204ENST00000438395 PPRC1Q5VV67 1664 aaKnown RBP12.99□□□□□ -0.33
VPS50-204ENST00000438395 CD109Q6YHK3 1445 aa12.99□□□□□ -0.33
VPS50-204ENST00000438395 KDM4FA0A1W2PPD8 638 aa12.99□□□□□ -0.33
VPS50-204ENST00000438395 ARID3CA6NKF2 412 aa12.99□□□□□ -0.33
VPS50-204ENST00000438395 P3H3Q8IVL6 736 aa12.99□□□□□ -0.33
VPS50-204ENST00000438395 EEA1Q15075 1411 aa12.98□□□□□ -0.33
VPS50-204ENST00000438395 POTEHQ6S545 545 aa12.96□□□□□ -0.33
VPS50-204ENST00000438395 ADGRL1O94910 1474 aa12.96□□□□□ -0.34
VPS50-204ENST00000438395 COL17A1Q9UMD9 1497 aaPredicted RBP12.95□□□□□ -0.34
VPS50-204ENST00000438395 MAGI3Q5TCQ9 1506 aa12.94□□□□□ -0.34
VPS50-204ENST00000438395 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms