RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 AEBP2Q6ZN18 517 aaPredicted RBP23.5■■□□□ 1.35
VPS50-204ENST00000438395 CHIC1Q5VXU3 224 aa22.44■■□□□ 1.18
VPS50-204ENST00000438395 SENP3Q9H4L4 574 aaPredicted RBP19.87■□□□□ 0.77
VPS50-204ENST00000438395 PHF23Q9BUL5 403 aaPredicted RBP19.77■□□□□ 0.76
VPS50-204ENST00000438395 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
VPS50-204ENST00000438395 FOXD1Q16676 465 aa18.59■□□□□ 0.57
VPS50-204ENST00000438395 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
VPS50-204ENST00000438395 PPP6R1Q9UPN7 881 aa17.61■□□□□ 0.41
VPS50-204ENST00000438395 ADRA2BP18089 450 aa17.57■□□□□ 0.4
VPS50-204ENST00000438395 PIAS4Q8N2W9 510 aaPredicted RBP17.42■□□□□ 0.38
VPS50-204ENST00000438395 ABCC9O60706 1549 aa17.26■□□□□ 0.35
VPS50-204ENST00000438395 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
VPS50-204ENST00000438395 MSH5O43196 834 aa17.2■□□□□ 0.34
VPS50-204ENST00000438395 POTEDQ86YR6 584 aa16.51■□□□□ 0.23
VPS50-204ENST00000438395 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
VPS50-204ENST00000438395 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
VPS50-204ENST00000438395 NACADO15069 1562 aa16.3■□□□□ 0.2
VPS50-204ENST00000438395 MAPK8IP2Q13387 824 aaPredicted RBP16.1■□□□□ 0.17
VPS50-204ENST00000438395 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
VPS50-204ENST00000438395 PABPN1Q86U42 306 aaKnown RBP eCLIP16.07■□□□□ 0.16
VPS50-204ENST00000438395 MYO15BQ96JP2 1530 aa16.07■□□□□ 0.16
VPS50-204ENST00000438395 ZCCHC6Q5VYS8 1495 aaKnown RBP15.92■□□□□ 0.14
VPS50-204ENST00000438395 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
VPS50-204ENST00000438395 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
VPS50-204ENST00000438395 PPP4R3CPQ6ZMV5 832 aa15.86■□□□□ 0.13
VPS50-204ENST00000438395 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
VPS50-204ENST00000438395 BICRAQ9NZM4 1560 aa15.85■□□□□ 0.13
VPS50-204ENST00000438395 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
VPS50-204ENST00000438395 SHROOM4Q9ULL8 1493 aa15.77■□□□□ 0.11
VPS50-204ENST00000438395 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
VPS50-204ENST00000438395 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
VPS50-204ENST00000438395 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
VPS50-204ENST00000438395 EIF4G1Q04637 1599 aaKnown RBP15.53■□□□□ 0.08
VPS50-204ENST00000438395 CNKSR2Q8WXI2 1034 aa15.45■□□□□ 0.06
VPS50-204ENST00000438395 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
VPS50-204ENST00000438395 DCAF8L1A6NGE4 600 aa15.26■□□□□ 0.03
VPS50-204ENST00000438395 RNF216Q9NWF9 866 aaPredicted RBP15.25■□□□□ 0.03
VPS50-204ENST00000438395 NCBP3Q53F19 620 aaKnown RBP15.23■□□□□ 0.03
VPS50-204ENST00000438395 NPM3O75607 178 aaKnown RBP15.11■□□□□ 0.01
VPS50-204ENST00000438395 KCNA4P22459 653 aa15.08■□□□□ 0
VPS50-204ENST00000438395 NCAPD3P42695 1498 aa15.03■□□□□ -0
VPS50-204ENST00000438395 SMARCA2P51531 1590 aa15□□□□□ -0.01
VPS50-204ENST00000438395 ATAD2BQ9ULI0 1458 aa15□□□□□ -0.01
VPS50-204ENST00000438395 ERCC6Q03468 1493 aa14.98□□□□□ -0.01
VPS50-204ENST00000438395 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
VPS50-204ENST00000438395 HMGXB3Q12766 1538 aa14.95□□□□□ -0.02
VPS50-204ENST00000438395 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
VPS50-204ENST00000438395 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
VPS50-204ENST00000438395 CUX2O14529 1486 aa14.89□□□□□ -0.03
VPS50-204ENST00000438395 DNAJC5Q9H3Z4 198 aa14.83□□□□□ -0.04
VPS50-204ENST00000438395 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
VPS50-204ENST00000438395 NESP48681 1621 aa14.78□□□□□ -0.04
VPS50-204ENST00000438395 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
VPS50-204ENST00000438395 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
VPS50-204ENST00000438395 LAMC3Q9Y6N6 1575 aa14.71□□□□□ -0.05
VPS50-204ENST00000438395 CACNB1Q02641 598 aaPredicted RBP14.7□□□□□ -0.06
VPS50-204ENST00000438395 PDS5BQ9NTI5 1447 aa14.68□□□□□ -0.06
VPS50-204ENST00000438395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS50-204ENST00000438395 THOC2Q8NI27 1593 aaKnown RBP14.62□□□□□ -0.07
VPS50-204ENST00000438395 CADPSQ9ULU8 1353 aa14.61□□□□□ -0.07
VPS50-204ENST00000438395 WIZO95785 1651 aa14.57□□□□□ -0.08
VPS50-204ENST00000438395 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
VPS50-204ENST00000438395 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
VPS50-204ENST00000438395 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
VPS50-204ENST00000438395 RSF1Q96T23 1441 aaPredicted RBP14.49□□□□□ -0.09
VPS50-204ENST00000438395 C1QBPQ07021 282 aaKnown RBP14.48□□□□□ -0.09
VPS50-204ENST00000438395 WDR62O43379 1518 aa14.46□□□□□ -0.1
VPS50-204ENST00000438395 TOP2AP11388 1531 aaKnown RBP14.46□□□□□ -0.1
VPS50-204ENST00000438395 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
VPS50-204ENST00000438395 CFTRP13569 1480 aa14.43□□□□□ -0.1
VPS50-204ENST00000438395 SLC4A2P04920 1241 aa14.4□□□□□ -0.1
VPS50-204ENST00000438395 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
VPS50-204ENST00000438395 URB2Q14146 1524 aaKnown RBP14.3□□□□□ -0.12
VPS50-204ENST00000438395 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.12
VPS50-204ENST00000438395 TRIM41Q8WV44 630 aa14.27□□□□□ -0.13
VPS50-204ENST00000438395 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
VPS50-204ENST00000438395 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
VPS50-204ENST00000438395 PRDM2Q13029 1718 aa14.21□□□□□ -0.14
VPS50-204ENST00000438395 IFT140Q96RY7 1462 aa14.19□□□□□ -0.14
VPS50-204ENST00000438395 ABCC8Q09428 1581 aa14.17□□□□□ -0.14
VPS50-204ENST00000438395 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
VPS50-204ENST00000438395 SPINK5Q9NQ38 1064 aaPredicted RBP14.15□□□□□ -0.14
VPS50-204ENST00000438395 ZNF608Q9ULD9 1512 aaPredicted RBP14.12□□□□□ -0.15
VPS50-204ENST00000438395 DNMBPQ6XZF7 1577 aa14.12□□□□□ -0.15
VPS50-204ENST00000438395 CAPN15O75808 1086 aa14.07□□□□□ -0.16
VPS50-204ENST00000438395 EIF4G3O43432 1585 aaKnown RBP14.05□□□□□ -0.16
VPS50-204ENST00000438395 POLA1P09884 1462 aaPredicted RBP14.02□□□□□ -0.16
VPS50-204ENST00000438395 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS50-204ENST00000438395 FBLN2P98095 1184 aa14.01□□□□□ -0.17
VPS50-204ENST00000438395 TARBP1Q13395 1621 aaKnown RBP13.98□□□□□ -0.17
VPS50-204ENST00000438395 SOGA1O94964 1423 aa13.98□□□□□ -0.17
VPS50-204ENST00000438395 RIMBP3CA6NJZ7 1639 aa13.97□□□□□ -0.17
VPS50-204ENST00000438395 RIMBP3BA6NNM3 1639 aa13.97□□□□□ -0.17
VPS50-204ENST00000438395 RIMBP3Q9UFD9 1639 aa13.97□□□□□ -0.17
VPS50-204ENST00000438395 ARHGEF11O15085 1522 aa13.96□□□□□ -0.17
VPS50-204ENST00000438395 RAD54L2Q9Y4B4 1467 aa13.95□□□□□ -0.18
VPS50-204ENST00000438395 SUPT5HO00267 1087 aaKnown RBP13.95□□□□□ -0.18
VPS50-204ENST00000438395 TDRD9Q8NDG6 1382 aaKnown RBP13.95□□□□□ -0.18
VPS50-204ENST00000438395 FGD5Q6ZNL6 1462 aa13.94□□□□□ -0.18
VPS50-204ENST00000438395 TRHP20396 242 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms