RNA–Protein interactions for RNA: ENST00000426180.1

HERPUD2-204, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 757 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-204ENST00000426180 SPDYE1Q8NFV5 336 aaPredicted RBP10.05□□□□□ -0.8
HERPUD2-204ENST00000426180 PDS5BQ9NTI5 1447 aa10.03□□□□□ -0.8
HERPUD2-204ENST00000426180 SSUH2Q9Y2M2 353 aa10.02□□□□□ -0.81
HERPUD2-204ENST00000426180 ERCC6Q03468 1493 aa10.02□□□□□ -0.81
HERPUD2-204ENST00000426180 FANCD2Q9BXW9 1451 aa10.01□□□□□ -0.81
HERPUD2-204ENST00000426180 KIF21AQ7Z4S6 1674 aa9.99□□□□□ -0.81
HERPUD2-204ENST00000426180 PRKAR2AP13861 404 aaKnown RBP9.99□□□□□ -0.81
HERPUD2-204ENST00000426180 CEP164Q9UPV0 1460 aa9.97□□□□□ -0.81
HERPUD2-204ENST00000426180 EVX2Q03828 476 aa9.96□□□□□ -0.82
HERPUD2-204ENST00000426180 PRDM2Q13029 1718 aa9.95□□□□□ -0.82
HERPUD2-204ENST00000426180 THOC2Q8NI27 1593 aaKnown RBP9.94□□□□□ -0.82
HERPUD2-204ENST00000426180 URB2Q14146 1524 aaKnown RBP9.93□□□□□ -0.82
HERPUD2-204ENST00000426180 MRC2Q9UBG0 1479 aa9.93□□□□□ -0.82
HERPUD2-204ENST00000426180 CSRNP3Q8WYN3 585 aa9.93□□□□□ -0.82
HERPUD2-204ENST00000426180 WDR62O43379 1518 aa9.89□□□□□ -0.83
HERPUD2-204ENST00000426180 ABCC8Q09428 1581 aa9.88□□□□□ -0.83
HERPUD2-204ENST00000426180 PRR29P0C7W0 189 aa9.88□□□□□ -0.83
HERPUD2-204ENST00000426180 CUX1P39880 1505 aa9.87□□□□□ -0.83
HERPUD2-204ENST00000426180 TOPBP1Q92547 1522 aa9.87□□□□□ -0.83
HERPUD2-204ENST00000426180 DNMBPQ6XZF7 1577 aa9.85□□□□□ -0.83
HERPUD2-204ENST00000426180 C19orf67A6NJJ6 358 aa9.85□□□□□ -0.83
HERPUD2-204ENST00000426180 CHADLQ6NUI6 762 aa9.85□□□□□ -0.83
HERPUD2-204ENST00000426180 CUX2O14529 1486 aa9.85□□□□□ -0.83
HERPUD2-204ENST00000426180 WRNQ14191 1432 aaPredicted RBP eCLIP9.84□□□□□ -0.83
HERPUD2-204ENST00000426180 SYNJ1O43426 1573 aa9.83□□□□□ -0.84
HERPUD2-204ENST00000426180 POLA1P09884 1462 aaPredicted RBP9.8□□□□□ -0.84
HERPUD2-204ENST00000426180 FGD5Q6ZNL6 1462 aa9.8□□□□□ -0.84
HERPUD2-204ENST00000426180 RAD54L2Q9Y4B4 1467 aa9.79□□□□□ -0.84
HERPUD2-204ENST00000426180 TOP2BQ02880 1626 aa9.78□□□□□ -0.84
HERPUD2-204ENST00000426180 BIVM-ERCC5R4GMW8 1640 aa9.78□□□□□ -0.84
HERPUD2-204ENST00000426180 SOGA1O94964 1423 aa9.76□□□□□ -0.85
HERPUD2-204ENST00000426180 IFT140Q96RY7 1462 aa9.76□□□□□ -0.85
HERPUD2-204ENST00000426180 ZNF608Q9ULD9 1512 aaPredicted RBP9.76□□□□□ -0.85
HERPUD2-204ENST00000426180 TARBP1Q13395 1621 aaKnown RBP9.75□□□□□ -0.85
HERPUD2-204ENST00000426180 GABBR2O75899 941 aa9.75□□□□□ -0.85
HERPUD2-204ENST00000426180 EHMT2Q96KQ7 1210 aa9.74□□□□□ -0.85
HERPUD2-204ENST00000426180 TDRD9Q8NDG6 1382 aaKnown RBP9.73□□□□□ -0.85
HERPUD2-204ENST00000426180 TRIM41Q8WV44 630 aa9.72□□□□□ -0.85
HERPUD2-204ENST00000426180 AQRO60306 1485 aaKnown RBP eCLIP9.72□□□□□ -0.85
HERPUD2-204ENST00000426180 FARP1Q9Y4F1 1045 aaPredicted RBP9.7□□□□□ -0.86
HERPUD2-204ENST00000426180 ABCA10Q8WWZ4 1543 aa9.7□□□□□ -0.86
HERPUD2-204ENST00000426180 WDR97A6NE52 1622 aa9.68□□□□□ -0.86
HERPUD2-204ENST00000426180 EIF4G3O43432 1585 aaKnown RBP9.67□□□□□ -0.86
HERPUD2-204ENST00000426180 CD44P16070 742 aaKnown RBP9.66□□□□□ -0.86
HERPUD2-204ENST00000426180 RUSC2Q8N2Y8 1516 aa9.65□□□□□ -0.86
HERPUD2-204ENST00000426180 GAPVD1Q14C86 1478 aa9.65□□□□□ -0.87
HERPUD2-204ENST00000426180 ABCA5Q8WWZ7 1642 aa9.64□□□□□ -0.87
HERPUD2-204ENST00000426180 STAG3Q9UJ98 1225 aa9.64□□□□□ -0.87
HERPUD2-204ENST00000426180 GRIN2BQ13224 1484 aa9.62□□□□□ -0.87
HERPUD2-204ENST00000426180 SPDYE4A6NLX3 237 aa9.61□□□□□ -0.87
HERPUD2-204ENST00000426180 KIF27Q86VH2 1401 aa9.61□□□□□ -0.87
HERPUD2-204ENST00000426180 SNAPC4Q5SXM2 1469 aa9.6□□□□□ -0.87
HERPUD2-204ENST00000426180 IGF1RP08069 1367 aa9.6□□□□□ -0.87
HERPUD2-204ENST00000426180 CLCN6P51797 869 aa9.59□□□□□ -0.87
HERPUD2-204ENST00000426180 PBRM1Q86U86 1689 aa9.58□□□□□ -0.88
HERPUD2-204ENST00000426180 LHX8Q68G74 356 aa9.57□□□□□ -0.88
HERPUD2-204ENST00000426180 FAM9AQ8IZU1 332 aaPredicted RBP9.57□□□□□ -0.88
HERPUD2-204ENST00000426180 CREBZFQ9NS37 354 aa9.57□□□□□ -0.88
HERPUD2-204ENST00000426180 ERICH3Q5RHP9 1530 aa9.56□□□□□ -0.88
HERPUD2-204ENST00000426180 MAGI1Q96QZ7 1491 aaPredicted RBP9.56□□□□□ -0.88
HERPUD2-204ENST00000426180 ADAMTS12P58397 1594 aa9.54□□□□□ -0.88
HERPUD2-204ENST00000426180 FHAD1B1AJZ9 1412 aa9.54□□□□□ -0.88
HERPUD2-204ENST00000426180 SYNJ2O15056 1496 aa9.53□□□□□ -0.88
HERPUD2-204ENST00000426180 CHMP7Q8WUX9 453 aaPredicted RBP9.53□□□□□ -0.88
HERPUD2-204ENST00000426180 CARMIL1Q5VZK9 1371 aa9.52□□□□□ -0.88
HERPUD2-204ENST00000426180 ZRANB1Q9UGI0 708 aa9.52□□□□□ -0.89
HERPUD2-204ENST00000426180 CHD1O14646 1710 aa9.51□□□□□ -0.89
HERPUD2-204ENST00000426180 POTEIP0CG38 1075 aa9.51□□□□□ -0.89
HERPUD2-204ENST00000426180 GRIN2AQ12879 1464 aa9.5□□□□□ -0.89
HERPUD2-204ENST00000426180 EEA1Q15075 1411 aa9.49□□□□□ -0.89
HERPUD2-204ENST00000426180 ZNF579Q8NAF0 562 aaKnown RBP9.49□□□□□ -0.89
HERPUD2-204ENST00000426180 CUL7Q14999 1698 aa9.48□□□□□ -0.89
HERPUD2-204ENST00000426180 PRXQ9BXM0 1461 aa9.48□□□□□ -0.89
HERPUD2-204ENST00000426180 DCBLD2Q96PD2 775 aa9.48□□□□□ -0.89
HERPUD2-204ENST00000426180 RAPGEF2Q9Y4G8 1499 aa9.47□□□□□ -0.89
HERPUD2-204ENST00000426180 NUP160Q12769 1436 aa9.46□□□□□ -0.9
HERPUD2-204ENST00000426180 CEP170Q5SW79 1584 aa9.46□□□□□ -0.9
HERPUD2-204ENST00000426180 PAK3O75914 559 aaPredicted RBP9.44□□□□□ -0.9
HERPUD2-204ENST00000426180 CLASP1Q7Z460 1538 aa9.43□□□□□ -0.9
HERPUD2-204ENST00000426180 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
HERPUD2-204ENST00000426180 DNAJC5Q9H3Z4 198 aa9.42□□□□□ -0.9
HERPUD2-204ENST00000426180 KIF21BO75037 1637 aa9.4□□□□□ -0.9
HERPUD2-204ENST00000426180 GALR2O43603 387 aaPredicted RBP9.39□□□□□ -0.91
HERPUD2-204ENST00000426180 MNX1P50219 401 aaPredicted RBP9.39□□□□□ -0.91
HERPUD2-204ENST00000426180 KIAA0586Q9BVV6 1533 aa9.39□□□□□ -0.91
HERPUD2-204ENST00000426180 GOLGA3Q08378 1498 aa9.37□□□□□ -0.91
HERPUD2-204ENST00000426180 LOC105371045A0A1W2PR82 267 aa9.37□□□□□ -0.91
HERPUD2-204ENST00000426180 JPH4Q96JJ6 628 aa9.37□□□□□ -0.91
HERPUD2-204ENST00000426180 ERCC6L2Q5T890 1561 aa9.37□□□□□ -0.91
HERPUD2-204ENST00000426180 SHROOM2Q13796 1616 aa9.35□□□□□ -0.91
HERPUD2-204ENST00000426180 UBTFP17480 764 aaKnown RBP9.35□□□□□ -0.91
HERPUD2-204ENST00000426180 IQGAP2Q13576 1575 aa9.35□□□□□ -0.91
HERPUD2-204ENST00000426180 PHF12Q96QT6 1004 aa9.35□□□□□ -0.91
HERPUD2-204ENST00000426180 PRG4Q92954 1404 aaPredicted RBP9.34□□□□□ -0.91
HERPUD2-204ENST00000426180 RANGAP1P46060 587 aaPredicted RBP9.34□□□□□ -0.91
HERPUD2-204ENST00000426180 ARHGEF11O15085 1522 aa9.34□□□□□ -0.91
HERPUD2-204ENST00000426180 CTTNBP2Q8WZ74 1663 aa9.32□□□□□ -0.92
HERPUD2-204ENST00000426180 RIMBP3CA6NJZ7 1639 aa9.32□□□□□ -0.92
HERPUD2-204ENST00000426180 RIMBP3BA6NNM3 1639 aa9.32□□□□□ -0.92
HERPUD2-204ENST00000426180 RIMBP3Q9UFD9 1639 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms