RNA–Protein interactions for RNA: ENST00000426180.1

HERPUD2-204, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 757 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-204ENST00000426180 AEBP2Q6ZN18 517 aaPredicted RBP18.84■□□□□ 0.61
HERPUD2-204ENST00000426180 CHIC1Q5VXU3 224 aa17.8■□□□□ 0.44
HERPUD2-204ENST00000426180 SENP3Q9H4L4 574 aaPredicted RBP16.11■□□□□ 0.17
HERPUD2-204ENST00000426180 PHF23Q9BUL5 403 aaPredicted RBP15.91■□□□□ 0.14
HERPUD2-204ENST00000426180 FOXD1Q16676 465 aa15.02■□□□□ -0
HERPUD2-204ENST00000426180 PLPPR3Q6T4P5 718 aa14.2□□□□□ -0.14
HERPUD2-204ENST00000426180 MSH5O43196 834 aa14.12□□□□□ -0.15
HERPUD2-204ENST00000426180 PIAS4Q8N2W9 510 aaPredicted RBP14.02□□□□□ -0.17
HERPUD2-204ENST00000426180 PPP6R1Q9UPN7 881 aa13.97□□□□□ -0.17
HERPUD2-204ENST00000426180 POTEDQ86YR6 584 aa13.94□□□□□ -0.18
HERPUD2-204ENST00000426180 ADRA2BP18089 450 aa13.92□□□□□ -0.18
HERPUD2-204ENST00000426180 NISCHQ9Y2I1 1504 aa13.64□□□□□ -0.23
HERPUD2-204ENST00000426180 MAPK8IP2Q13387 824 aaPredicted RBP12.83□□□□□ -0.36
HERPUD2-204ENST00000426180 SCAF1Q9H7N4 1312 aaKnown RBP12.79□□□□□ -0.36
HERPUD2-204ENST00000426180 DMRT2Q9Y5R5 561 aa12.75□□□□□ -0.37
HERPUD2-204ENST00000426180 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
HERPUD2-204ENST00000426180 DCAF8L1A6NGE4 600 aa12.28□□□□□ -0.44
HERPUD2-204ENST00000426180 HOXD11P31277 338 aaPredicted RBP12.24□□□□□ -0.45
HERPUD2-204ENST00000426180 CNKSR2Q8WXI2 1034 aa12.22□□□□□ -0.45
HERPUD2-204ENST00000426180 CACNB1Q02641 598 aaPredicted RBP12.19□□□□□ -0.46
HERPUD2-204ENST00000426180 RNF216Q9NWF9 866 aaPredicted RBP12.14□□□□□ -0.47
HERPUD2-204ENST00000426180 RNF39Q9H2S5 420 aa12.02□□□□□ -0.49
HERPUD2-204ENST00000426180 CCDC180Q9P1Z9 1646 aa11.99□□□□□ -0.49
HERPUD2-204ENST00000426180 NCBP3Q53F19 620 aaKnown RBP11.95□□□□□ -0.5
HERPUD2-204ENST00000426180 C1QBPQ07021 282 aaKnown RBP11.86□□□□□ -0.51
HERPUD2-204ENST00000426180 DNAJC5BQ9UF47 199 aa11.85□□□□□ -0.51
HERPUD2-204ENST00000426180 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
HERPUD2-204ENST00000426180 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.7□□□□□ -0.54
HERPUD2-204ENST00000426180 ABCC9O60706 1549 aa11.69□□□□□ -0.54
HERPUD2-204ENST00000426180 KCNA4P22459 653 aa11.42□□□□□ -0.58
HERPUD2-204ENST00000426180 U3KPZ7 1027 aaPredicted RBP11.39□□□□□ -0.59
HERPUD2-204ENST00000426180 ZCCHC6Q5VYS8 1495 aaKnown RBP11.38□□□□□ -0.59
HERPUD2-204ENST00000426180 DCAF8L2P0C7V8 631 aa11.37□□□□□ -0.59
HERPUD2-204ENST00000426180 CAPN15O75808 1086 aa11.29□□□□□ -0.6
HERPUD2-204ENST00000426180 SPINK5Q9NQ38 1064 aaPredicted RBP11.28□□□□□ -0.6
HERPUD2-204ENST00000426180 NACADO15069 1562 aa11.26□□□□□ -0.61
HERPUD2-204ENST00000426180 DCAF1Q9Y4B6 1507 aa11.25□□□□□ -0.61
HERPUD2-204ENST00000426180 RB1CC1Q8TDY2 1594 aa11.24□□□□□ -0.61
HERPUD2-204ENST00000426180 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
HERPUD2-204ENST00000426180 DSG3P32926 999 aa11.23□□□□□ -0.61
HERPUD2-204ENST00000426180 MYO15BQ96JP2 1530 aa11.23□□□□□ -0.61
HERPUD2-204ENST00000426180 APLP2Q06481 763 aa11.13□□□□□ -0.63
HERPUD2-204ENST00000426180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.09□□□□□ -0.63
HERPUD2-204ENST00000426180 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
HERPUD2-204ENST00000426180 HNRNPUL2Q1KMD3 747 aaKnown RBP11.09□□□□□ -0.63
HERPUD2-204ENST00000426180 ZNF219Q9P2Y4 722 aaPredicted RBP11.05□□□□□ -0.64
HERPUD2-204ENST00000426180 SCRIBQ14160 1630 aa11.03□□□□□ -0.64
HERPUD2-204ENST00000426180 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
HERPUD2-204ENST00000426180 ABCB7O75027 752 aa11□□□□□ -0.65
HERPUD2-204ENST00000426180 PABPN1Q86U42 306 aaKnown RBP eCLIP10.98□□□□□ -0.65
HERPUD2-204ENST00000426180 UNC13AQ9UPW8 1703 aa10.98□□□□□ -0.65
HERPUD2-204ENST00000426180 BICRAQ9NZM4 1560 aa10.95□□□□□ -0.66
HERPUD2-204ENST00000426180 SHROOM4Q9ULL8 1493 aa10.93□□□□□ -0.66
HERPUD2-204ENST00000426180 POTEHQ6S545 545 aa10.91□□□□□ -0.66
HERPUD2-204ENST00000426180 MYCNP04198 464 aaPredicted RBP10.86□□□□□ -0.67
HERPUD2-204ENST00000426180 POLA2Q14181 598 aa10.77□□□□□ -0.69
HERPUD2-204ENST00000426180 SLC4A1APQ9BWU0 796 aaKnown RBP10.77□□□□□ -0.69
HERPUD2-204ENST00000426180 RBM42Q9BTD8 480 aaKnown RBP10.73□□□□□ -0.69
HERPUD2-204ENST00000426180 FOXD4L1Q9NU39 408 aa10.69□□□□□ -0.7
HERPUD2-204ENST00000426180 CECR2Q9BXF3 1484 aa10.66□□□□□ -0.7
HERPUD2-204ENST00000426180 EIF4G1Q04637 1599 aaKnown RBP10.62□□□□□ -0.71
HERPUD2-204ENST00000426180 ATF5Q9Y2D1 282 aaPredicted RBP10.61□□□□□ -0.71
HERPUD2-204ENST00000426180 CC2D2AQ9P2K1 1620 aa10.55□□□□□ -0.72
HERPUD2-204ENST00000426180 MROH2BQ7Z745 1585 aa10.54□□□□□ -0.72
HERPUD2-204ENST00000426180 SMARCA4P51532 1647 aa10.54□□□□□ -0.72
HERPUD2-204ENST00000426180 CHRDL2Q6WN34 429 aa10.53□□□□□ -0.72
HERPUD2-204ENST00000426180 ZBTB12Q9Y330 459 aaPredicted RBP10.53□□□□□ -0.72
HERPUD2-204ENST00000426180 BAZ1AQ9NRL2 1556 aaPredicted RBP10.52□□□□□ -0.72
HERPUD2-204ENST00000426180 ZBTB22O15209 634 aa10.47□□□□□ -0.73
HERPUD2-204ENST00000426180 RSF1Q96T23 1441 aaPredicted RBP10.47□□□□□ -0.73
HERPUD2-204ENST00000426180 AKT1S1Q96B36 256 aa10.46□□□□□ -0.73
HERPUD2-204ENST00000426180 ATAD2BQ9ULI0 1458 aa10.46□□□□□ -0.74
HERPUD2-204ENST00000426180 WIZO95785 1651 aa10.42□□□□□ -0.74
HERPUD2-204ENST00000426180 NCAPD3P42695 1498 aa10.42□□□□□ -0.74
HERPUD2-204ENST00000426180 SMARCA2P51531 1590 aa10.41□□□□□ -0.74
HERPUD2-204ENST00000426180 PEG3Q9GZU2 1588 aa10.41□□□□□ -0.74
HERPUD2-204ENST00000426180 ATXN8OSP0DMR3 200 aa10.39□□□□□ -0.75
HERPUD2-204ENST00000426180 OSCARQ8IYS5 282 aa10.39□□□□□ -0.75
HERPUD2-204ENST00000426180 BAZ1BQ9UIG0 1483 aaKnown RBP10.36□□□□□ -0.75
HERPUD2-204ENST00000426180 REM2Q8IYK8 340 aaPredicted RBP10.36□□□□□ -0.75
HERPUD2-204ENST00000426180 HMGXB3Q12766 1538 aa10.36□□□□□ -0.75
HERPUD2-204ENST00000426180 SUPT5HO00267 1087 aaKnown RBP10.34□□□□□ -0.75
HERPUD2-204ENST00000426180 TOP2AP11388 1531 aaKnown RBP10.29□□□□□ -0.76
HERPUD2-204ENST00000426180 FBLN2P98095 1184 aa10.25□□□□□ -0.77
HERPUD2-204ENST00000426180 PIP4P2Q8N4L2 257 aa10.24□□□□□ -0.77
HERPUD2-204ENST00000426180 PITPNM1O00562 1244 aa10.23□□□□□ -0.77
HERPUD2-204ENST00000426180 CCDC88BA6NC98 1476 aa10.21□□□□□ -0.78
HERPUD2-204ENST00000426180 SPDYE2BA6NHP3 402 aa10.19□□□□□ -0.78
HERPUD2-204ENST00000426180 SPDYE6P0CI01 402 aa10.19□□□□□ -0.78
HERPUD2-204ENST00000426180 SPDYE2Q495Y8 402 aa10.19□□□□□ -0.78
HERPUD2-204ENST00000426180 FXR2P51116 673 aaKnown RBP eCLIP10.18□□□□□ -0.78
HERPUD2-204ENST00000426180 SP7Q8TDD2 431 aaPredicted RBP10.18□□□□□ -0.78
HERPUD2-204ENST00000426180 NESP48681 1621 aa10.18□□□□□ -0.78
HERPUD2-204ENST00000426180 CADPSQ9ULU8 1353 aa10.14□□□□□ -0.79
HERPUD2-204ENST00000426180 HAX1O00165 279 aa10.13□□□□□ -0.79
HERPUD2-204ENST00000426180 MKRN4PQ13434 485 aaPredicted RBP10.11□□□□□ -0.79
HERPUD2-204ENST00000426180 CFTRP13569 1480 aa10.1□□□□□ -0.79
HERPUD2-204ENST00000426180 ZNF692Q9BU19 519 aaPredicted RBP10.09□□□□□ -0.79
HERPUD2-204ENST00000426180 LAMC3Q9Y6N6 1575 aa10.08□□□□□ -0.8
HERPUD2-204ENST00000426180 CLEC11AQ9Y240 323 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms