RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 CARMIL1Q5VZK9 1371 aa21.92■■□□□ 1.1
C9orf3-204ENST00000424143 CADPSQ9ULU8 1353 aa21.91■■□□□ 1.1
C9orf3-204ENST00000424143 SUPT16HQ9Y5B9 1047 aaKnown RBP21.91■■□□□ 1.1
C9orf3-204ENST00000424143 AQRO60306 1485 aaKnown RBP eCLIP21.89■■□□□ 1.096e-7■■■□□ 16.8
C9orf3-204ENST00000424143 EFCAB5A4FU69 1503 aa21.86■■□□□ 1.09
C9orf3-204ENST00000424143 FGD5Q6ZNL6 1462 aa21.83■■□□□ 1.09
C9orf3-204ENST00000424143 FYCO1Q9BQS8 1478 aa21.81■■□□□ 1.08
C9orf3-204ENST00000424143 PHLDB1Q86UU1 1377 aa21.79■■□□□ 1.08
C9orf3-204ENST00000424143 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.08
C9orf3-204ENST00000424143 CASKIN1Q8WXD9 1431 aa21.77■■□□□ 1.08
C9orf3-204ENST00000424143 PCF11O94913 1555 aaKnown RBP21.75■■□□□ 1.07
C9orf3-204ENST00000424143 CUL7Q14999 1698 aa21.74■■□□□ 1.07
C9orf3-204ENST00000424143 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
C9orf3-204ENST00000424143 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
C9orf3-204ENST00000424143 CCER2I3L3R5 266 aa21.72■■□□□ 1.07
C9orf3-204ENST00000424143 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
C9orf3-204ENST00000424143 PPP1R15AO75807 674 aaPredicted RBP21.69■■□□□ 1.06
C9orf3-204ENST00000424143 CTTNBP2Q8WZ74 1663 aa21.66■■□□□ 1.06
C9orf3-204ENST00000424143 FMN1Q68DA7 1419 aa21.64■■□□□ 1.06
C9orf3-204ENST00000424143 ITGAEP38570 1179 aa21.64■■□□□ 1.05
C9orf3-204ENST00000424143 TSHZ2Q9NRE2 1034 aa21.63■■□□□ 1.05
C9orf3-204ENST00000424143 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
C9orf3-204ENST00000424143 THOC2Q8NI27 1593 aaKnown RBP21.61■■□□□ 1.05
C9orf3-204ENST00000424143 FGD6Q6ZV73 1430 aa21.59■■□□□ 1.05
C9orf3-204ENST00000424143 HFM1A2PYH4 1435 aa21.57■■□□□ 1.04
C9orf3-204ENST00000424143 FAM50AQ14320 339 aaKnown RBP21.57■■□□□ 1.04
C9orf3-204ENST00000424143 TOPBP1Q92547 1522 aa21.56■■□□□ 1.04
C9orf3-204ENST00000424143 SNAPC4Q5SXM2 1469 aa21.56■■□□□ 1.04
C9orf3-204ENST00000424143 UACAQ9BZF9 1416 aa21.56■■□□□ 1.04
C9orf3-204ENST00000424143 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
C9orf3-204ENST00000424143 SIN3AQ96ST3 1273 aa21.55■■□□□ 1.04
C9orf3-204ENST00000424143 FHOD3Q2V2M9 1422 aa21.55■■□□□ 1.04
C9orf3-204ENST00000424143 SAMD9Q5K651 1589 aa21.54■■□□□ 1.04
C9orf3-204ENST00000424143 DDX10Q13206 875 aaKnown RBP21.52■■□□□ 1.04
C9orf3-204ENST00000424143 CCDC18Q5T9S5 1454 aa21.5■■□□□ 1.03
C9orf3-204ENST00000424143 PTPN23Q9H3S7 1636 aa21.5■■□□□ 1.03
C9orf3-204ENST00000424143 KIF21AQ7Z4S6 1674 aa21.49■■□□□ 1.03
C9orf3-204ENST00000424143 KCNH8Q96L42 1107 aa21.49■■□□□ 1.03
C9orf3-204ENST00000424143 ANP32CO43423 234 aa21.48■■□□□ 1.03
C9orf3-204ENST00000424143 GRIN2BQ13224 1484 aa21.46■■□□□ 1.03
C9orf3-204ENST00000424143 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
C9orf3-204ENST00000424143 TONSLQ96HA7 1378 aa21.45■■□□□ 1.02
C9orf3-204ENST00000424143 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
C9orf3-204ENST00000424143 EHBP1L1Q8N3D4 1523 aa21.44■■□□□ 1.02
C9orf3-204ENST00000424143 MYOM3Q5VTT5 1437 aa21.44■■□□□ 1.02
C9orf3-204ENST00000424143 AKNAQ7Z591 1439 aa21.44■■□□□ 1.02
C9orf3-204ENST00000424143 SUPT6HQ7KZ85 1726 aaKnown RBP21.43■■□□□ 1.02
C9orf3-204ENST00000424143 ABCA5Q8WWZ7 1642 aa21.43■■□□□ 1.02
C9orf3-204ENST00000424143 ANP32EQ9BTT0 268 aa21.43■■□□□ 1.02
C9orf3-204ENST00000424143 NAIPQ13075 1403 aa21.43■■□□□ 1.02
C9orf3-204ENST00000424143 NEFLP07196 543 aa21.41■■□□□ 1.02
C9orf3-204ENST00000424143 MTUS2Q5JR59 1369 aa21.4■■□□□ 1.02
C9orf3-204ENST00000424143 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
C9orf3-204ENST00000424143 TCOF1Q13428 1488 aaKnown RBP21.4■■□□□ 1.02
C9orf3-204ENST00000424143 KDM5BQ9UGL1 1544 aa21.39■■□□□ 1.02
C9orf3-204ENST00000424143 NCOA2Q15596 1464 aa21.39■■□□□ 1.01
C9orf3-204ENST00000424143 PTPRKQ15262 1439 aa21.38■■□□□ 1.01
C9orf3-204ENST00000424143 FKBP8Q14318 412 aa21.38■■□□□ 1.01
C9orf3-204ENST00000424143 UGGT2Q9NYU1 1516 aa21.38■■□□□ 1.01
C9orf3-204ENST00000424143 LRRIQ1Q96JM4 1722 aa21.37■■□□□ 1.01
C9orf3-204ENST00000424143 P3H3Q8IVL6 736 aa21.37■■□□□ 1.01
C9orf3-204ENST00000424143 GCC2Q8IWJ2 1684 aa21.36■■□□□ 1.01
C9orf3-204ENST00000424143 HECW1Q76N89 1606 aa21.34■■□□□ 1.01
C9orf3-204ENST00000424143 ERICH6BQ5W0A0 696 aa21.33■■□□□ 1
C9orf3-204ENST00000424143 ATP1B4Q9UN42 357 aaPredicted RBP21.3■■□□□ 1
C9orf3-204ENST00000424143 URB2Q14146 1524 aaKnown RBP21.29■■□□□ 1
C9orf3-204ENST00000424143 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
C9orf3-204ENST00000424143 MIA2Q96PC5 1412 aa21.28■■□□□ 1
C9orf3-204ENST00000424143 RBM19Q9Y4C8 960 aaKnown RBP21.19■□□□□ 0.98
C9orf3-204ENST00000424143 NESP48681 1621 aa21.18■□□□□ 0.98
C9orf3-204ENST00000424143 DENND4BO75064 1496 aaPredicted RBP21.18■□□□□ 0.98
C9orf3-204ENST00000424143 PDS5BQ9NTI5 1447 aa21.18■□□□□ 0.98
C9orf3-204ENST00000424143 MAGI3Q5TCQ9 1506 aa21.17■□□□□ 0.98
C9orf3-204ENST00000424143 TRIM52Q96A61 297 aa21.16■□□□□ 0.98
C9orf3-204ENST00000424143 ROCK1Q13464 1354 aa21.16■□□□□ 0.98
C9orf3-204ENST00000424143 BCANQ96GW7 911 aa21.15■□□□□ 0.98
C9orf3-204ENST00000424143 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
C9orf3-204ENST00000424143 CNTLNQ9NXG0 1405 aa21.15■□□□□ 0.98
C9orf3-204ENST00000424143 HIRIP3Q9BW71 556 aaPredicted RBP21.14■□□□□ 0.97
C9orf3-204ENST00000424143 EPRSP07814 1512 aaKnown RBP21.12■□□□□ 0.97
C9orf3-204ENST00000424143 EIF4G2P78344 907 aaKnown RBP eCLIP21.12■□□□□ 0.97
C9orf3-204ENST00000424143 WASHC2AQ641Q2 1341 aa21.12■□□□□ 0.97
C9orf3-204ENST00000424143 TDRD9Q8NDG6 1382 aaKnown RBP21.11■□□□□ 0.97
C9orf3-204ENST00000424143 NCOA1Q15788 1441 aa21.11■□□□□ 0.97
C9orf3-204ENST00000424143 POLR1AO95602 1720 aaPredicted RBP21.1■□□□□ 0.97
C9orf3-204ENST00000424143 FANCIQ9NVI1 1328 aa21.1■□□□□ 0.97
C9orf3-204ENST00000424143 HSPA5P11021 654 aaKnown RBP21.1■□□□□ 0.97
C9orf3-204ENST00000424143 IQGAP2Q13576 1575 aa21.09■□□□□ 0.97
C9orf3-204ENST00000424143 WDR62O43379 1518 aa21.08■□□□□ 0.97
C9orf3-204ENST00000424143 RPRD2Q5VT52 1461 aaKnown RBP21.06■□□□□ 0.96
C9orf3-204ENST00000424143 PBRM1Q86U86 1689 aa21.05■□□□□ 0.96
C9orf3-204ENST00000424143 HNRNPUQ00839 825 aaKnown RBP eCLIP21.04■□□□□ 0.96
C9orf3-204ENST00000424143 MPHOSPH9Q99550 1183 aa21.04■□□□□ 0.96
C9orf3-204ENST00000424143 CCDC7Q96M83 1385 aa21.04■□□□□ 0.96
C9orf3-204ENST00000424143 ANKRD30BQ9BXX2 1392 aa21.03■□□□□ 0.96
C9orf3-204ENST00000424143 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
C9orf3-204ENST00000424143 KDM6BO15054 1643 aa21.02■□□□□ 0.96
C9orf3-204ENST00000424143 DNMT1P26358 1616 aaKnown RBP21.02■□□□□ 0.96
C9orf3-204ENST00000424143 SPATA31E1Q6ZUB1 1445 aa21.01■□□□□ 0.95
C9orf3-204ENST00000424143 TEX14Q8IWB6 1497 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms