RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 NISCHQ9Y2I1 1504 aa30.98■■■□□ 2.55
C9orf3-204ENST00000424143 CCDC180Q9P1Z9 1646 aa26.4■■□□□ 1.82
C9orf3-204ENST00000424143 ZCCHC6Q5VYS8 1495 aaKnown RBP26.3■■□□□ 1.8
C9orf3-204ENST00000424143 SHROOM4Q9ULL8 1493 aa26.02■■□□□ 1.76
C9orf3-204ENST00000424143 SUPT5HO00267 1087 aaKnown RBP25.74■■□□□ 1.71
C9orf3-204ENST00000424143 DCAF1Q9Y4B6 1507 aa25.71■■□□□ 1.71
C9orf3-204ENST00000424143 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
C9orf3-204ENST00000424143 MYO15BQ96JP2 1530 aa25.33■■□□□ 1.65
C9orf3-204ENST00000424143 HRCP23327 699 aa25.27■■□□□ 1.64
C9orf3-204ENST00000424143 DCAF8L2P0C7V8 631 aa24.94■■□□□ 1.58
C9orf3-204ENST00000424143 ABCC9O60706 1549 aa24.86■■□□□ 1.57
C9orf3-204ENST00000424143 PCGF6Q9BYE7 350 aa24.76■■□□□ 1.55
C9orf3-204ENST00000424143 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
C9orf3-204ENST00000424143 TRIM26Q12899 539 aaPredicted RBP24.53■■□□□ 1.52
C9orf3-204ENST00000424143 LOC105371045A0A1W2PR82 267 aa24.46■■□□□ 1.51
C9orf3-204ENST00000424143 RB1CC1Q8TDY2 1594 aa24.45■■□□□ 1.5
C9orf3-204ENST00000424143 ZEB1P37275 1124 aaPredicted RBP24.35■■□□□ 1.49
C9orf3-204ENST00000424143 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
C9orf3-204ENST00000424143 NACADO15069 1562 aa24.28■■□□□ 1.48
C9orf3-204ENST00000424143 PPARGC1BQ86YN6 1023 aaKnown RBP24.28■■□□□ 1.48
C9orf3-204ENST00000424143 TRIM41Q8WV44 630 aa24.17■■□□□ 1.46
C9orf3-204ENST00000424143 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
C9orf3-204ENST00000424143 CECR2Q9BXF3 1484 aa23.91■■□□□ 1.42
C9orf3-204ENST00000424143 BAZ1AQ9NRL2 1556 aaPredicted RBP23.89■■□□□ 1.42
C9orf3-204ENST00000424143 EIF4G1Q04637 1599 aaKnown RBP23.85■■□□□ 1.41
C9orf3-204ENST00000424143 WIZO95785 1651 aa23.8■■□□□ 1.4
C9orf3-204ENST00000424143 PELP1Q8IZL8 1130 aaKnown RBP23.67■■□□□ 1.38
C9orf3-204ENST00000424143 FAM9AQ8IZU1 332 aaPredicted RBP23.66■■□□□ 1.38
C9orf3-204ENST00000424143 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.38
C9orf3-204ENST00000424143 WRNQ14191 1432 aaPredicted RBP eCLIP23.62■■□□□ 1.37
C9orf3-204ENST00000424143 SMARCA4P51532 1647 aa23.5■■□□□ 1.35
C9orf3-204ENST00000424143 EEA1Q15075 1411 aa23.5■■□□□ 1.35
C9orf3-204ENST00000424143 SMARCA2P51531 1590 aa23.45■■□□□ 1.34
C9orf3-204ENST00000424143 CCDC88BA6NC98 1476 aa23.41■■□□□ 1.34
C9orf3-204ENST00000424143 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
C9orf3-204ENST00000424143 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
C9orf3-204ENST00000424143 CEP162Q5TB80 1403 aa23.29■■□□□ 1.32
C9orf3-204ENST00000424143 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
C9orf3-204ENST00000424143 ABCC8Q09428 1581 aa23.27■■□□□ 1.32
C9orf3-204ENST00000424143 CCER1Q8TC90 406 aaPredicted RBP23.26■■□□□ 1.31
C9orf3-204ENST00000424143 PEG3Q9GZU2 1588 aa23.25■■□□□ 1.31
C9orf3-204ENST00000424143 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.17■■□□□ 1.3
C9orf3-204ENST00000424143 CSRNP3Q8WYN3 585 aa23.17■■□□□ 1.3
C9orf3-204ENST00000424143 GOLGA3Q08378 1498 aa23.17■■□□□ 1.3
C9orf3-204ENST00000424143 EHMT2Q96KQ7 1210 aa23.16■■□□□ 1.3
C9orf3-204ENST00000424143 SOGA1O94964 1423 aa23.15■■□□□ 1.3
C9orf3-204ENST00000424143 ACIN1Q9UKV3 1341 aaKnown RBP23.14■■□□□ 1.3
C9orf3-204ENST00000424143 KIF21BO75037 1637 aa23.09■■□□□ 1.29
C9orf3-204ENST00000424143 DIEXFQ68CQ4 756 aaKnown RBP23.04■■□□□ 1.28
C9orf3-204ENST00000424143 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
C9orf3-204ENST00000424143 CENPBP07199 599 aaPredicted RBP23.02■■□□□ 1.28
C9orf3-204ENST00000424143 BICRAQ9NZM4 1560 aa23■■□□□ 1.27
C9orf3-204ENST00000424143 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
C9orf3-204ENST00000424143 RUSC2Q8N2Y8 1516 aa22.97■■□□□ 1.27
C9orf3-204ENST00000424143 NEUROD1Q13562 356 aa22.91■■□□□ 1.26
C9orf3-204ENST00000424143 ZNF316A6NFI3 1004 aaPredicted RBP22.9■■□□□ 1.26
C9orf3-204ENST00000424143 UBTFP17480 764 aaKnown RBP22.9■■□□□ 1.26
C9orf3-204ENST00000424143 SYNJ1O43426 1573 aa22.87■■□□□ 1.25
C9orf3-204ENST00000424143 VPS8Q8N3P4 1428 aa22.84■■□□□ 1.25
C9orf3-204ENST00000424143 CLIP1P30622 1438 aa22.82■■□□□ 1.24
C9orf3-204ENST00000424143 ATAD2BQ9ULI0 1458 aa22.8■■□□□ 1.24
C9orf3-204ENST00000424143 CLSPNQ9HAW4 1339 aa22.73■■□□□ 1.23
C9orf3-204ENST00000424143 TOP2BQ02880 1626 aa22.72■■□□□ 1.23
C9orf3-204ENST00000424143 GTF3C3Q9Y5Q9 886 aa22.71■■□□□ 1.23
C9orf3-204ENST00000424143 ERICH3Q5RHP9 1530 aa22.7■■□□□ 1.22
C9orf3-204ENST00000424143 MYT1Q01538 1121 aa22.69■■□□□ 1.22
C9orf3-204ENST00000424143 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
C9orf3-204ENST00000424143 RAPGEF2Q9Y4G8 1499 aa22.63■■□□□ 1.21
C9orf3-204ENST00000424143 APLP2Q06481 763 aa22.58■■□□□ 1.21
C9orf3-204ENST00000424143 PRXQ9BXM0 1461 aa22.58■■□□□ 1.2
C9orf3-204ENST00000424143 TTBK1Q5TCY1 1321 aaPredicted RBP22.57■■□□□ 1.2
C9orf3-204ENST00000424143 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
C9orf3-204ENST00000424143 HMGXB3Q12766 1538 aa22.49■■□□□ 1.19
C9orf3-204ENST00000424143 HNRNPUL2Q1KMD3 747 aaKnown RBP22.48■■□□□ 1.19
C9orf3-204ENST00000424143 CUX2O14529 1486 aa22.46■■□□□ 1.19
C9orf3-204ENST00000424143 ARAP1Q96P48 1450 aa22.44■■□□□ 1.18
C9orf3-204ENST00000424143 MIER1Q8N108 512 aa22.43■■□□□ 1.18
C9orf3-204ENST00000424143 RRBP1Q9P2E9 1410 aaKnown RBP22.43■■□□□ 1.18
C9orf3-204ENST00000424143 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
C9orf3-204ENST00000424143 DHX57Q6P158 1386 aaKnown RBP22.39■■□□□ 1.17
C9orf3-204ENST00000424143 KIF27Q86VH2 1401 aa22.35■■□□□ 1.17
C9orf3-204ENST00000424143 MAP3K1Q13233 1512 aa22.32■■□□□ 1.16
C9orf3-204ENST00000424143 CUX1P39880 1505 aa22.31■■□□□ 1.16
C9orf3-204ENST00000424143 CFTRP13569 1480 aa22.27■■□□□ 1.16
C9orf3-204ENST00000424143 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
C9orf3-204ENST00000424143 ARHGAP35Q9NRY4 1499 aa22.19■■□□□ 1.14
C9orf3-204ENST00000424143 CCNB3Q8WWL7 1395 aa22.19■■□□□ 1.14
C9orf3-204ENST00000424143 YTHDC1Q96MU7 727 aaKnown RBP22.18■■□□□ 1.14
C9orf3-204ENST00000424143 KANK4Q5T7N3 995 aaPredicted RBP22.16■■□□□ 1.14
C9orf3-204ENST00000424143 TIAM1Q13009 1591 aa22.07■■□□□ 1.12
C9orf3-204ENST00000424143 IGF1RP08069 1367 aa22.03■■□□□ 1.12
C9orf3-204ENST00000424143 TIMELESSQ9UNS1 1208 aa22.02■■□□□ 1.12
C9orf3-204ENST00000424143 MAPKBP1O60336 1514 aa21.98■■□□□ 1.11
C9orf3-204ENST00000424143 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
C9orf3-204ENST00000424143 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.97■■□□□ 1.11
C9orf3-204ENST00000424143 RANGAP1P46060 587 aaPredicted RBP21.97■■□□□ 1.11
C9orf3-204ENST00000424143 LRRC9Q6ZRR7 1453 aa21.97■■□□□ 1.11
C9orf3-204ENST00000424143 SETD5Q9C0A6 1442 aa21.97■■□□□ 1.11
C9orf3-204ENST00000424143 CFAP43Q8NDM7 1665 aa21.96■■□□□ 1.11
C9orf3-204ENST00000424143 RAB3GAP2Q9H2M9 1393 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms