RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 KIF27Q86VH2 1401 aa30.36■■■□□ 2.45
USP48-205ENST00000421625 NESP48681 1621 aa30.33■■■□□ 2.45
USP48-205ENST00000421625 WDR97A6NE52 1622 aa30.32■■■□□ 2.44
USP48-205ENST00000421625 SIN3AQ96ST3 1273 aa30.28■■■□□ 2.44
USP48-205ENST00000421625 SETD5Q9C0A6 1442 aa30.25■■■□□ 2.43
USP48-205ENST00000421625 FANCD2Q9BXW9 1451 aa30.22■■■□□ 2.43
USP48-205ENST00000421625 PRDM2Q13029 1718 aa30.22■■■□□ 2.43
USP48-205ENST00000421625 TIAM1Q13009 1591 aa30.21■■■□□ 2.43
USP48-205ENST00000421625 PPP1R15AO75807 674 aaPredicted RBP30.2■■■□□ 2.43
USP48-205ENST00000421625 HIRIP3Q9BW71 556 aaPredicted RBP30.17■■■□□ 2.42
USP48-205ENST00000421625 BCL11AQ9H165 835 aa30.17■■■□□ 2.42
USP48-205ENST00000421625 PHLDB1Q86UU1 1377 aa30.14■■■□□ 2.42
USP48-205ENST00000421625 TRIM52Q96A61 297 aa30.14■■■□□ 2.41
USP48-205ENST00000421625 RBM19Q9Y4C8 960 aaKnown RBP30.13■■■□□ 2.41
USP48-205ENST00000421625 NEFLP07196 543 aa30.12■■■□□ 2.41
USP48-205ENST00000421625 FAM50AQ14320 339 aaKnown RBP30.11■■■□□ 2.41
USP48-205ENST00000421625 FGD5Q6ZNL6 1462 aa30.11■■■□□ 2.41
USP48-205ENST00000421625 LRRC9Q6ZRR7 1453 aa30.1■■■□□ 2.41
USP48-205ENST00000421625 MAP3K1Q13233 1512 aa30.1■■■□□ 2.41
USP48-205ENST00000421625 CCER2I3L3R5 266 aa30.03■■■□□ 2.4
USP48-205ENST00000421625 IGF1RP08069 1367 aa30.02■■■□□ 2.4
USP48-205ENST00000421625 ANP32CO43423 234 aa30.01■■■□□ 2.4
USP48-205ENST00000421625 TIMELESSQ9UNS1 1208 aa29.97■■■□□ 2.39
USP48-205ENST00000421625 RAD54L2Q9Y4B4 1467 aa29.96■■■□□ 2.39
USP48-205ENST00000421625 TOPBP1Q92547 1522 aa29.92■■■□□ 2.38
USP48-205ENST00000421625 CFAP43Q8NDM7 1665 aa29.9■■■□□ 2.38
USP48-205ENST00000421625 CARMIL1Q5VZK9 1371 aa29.9■■■□□ 2.38
USP48-205ENST00000421625 LAMC3Q9Y6N6 1575 aa29.89■■■□□ 2.38
USP48-205ENST00000421625 P3H3Q8IVL6 736 aa29.89■■■□□ 2.37
USP48-205ENST00000421625 PCF11O94913 1555 aaKnown RBP29.89■■■□□ 2.37
USP48-205ENST00000421625 ATP1B4Q9UN42 357 aaPredicted RBP29.88■■■□□ 2.37
USP48-205ENST00000421625 DNMBPQ6XZF7 1577 aa29.86■■■□□ 2.37
USP48-205ENST00000421625 POLA1P09884 1462 aaPredicted RBP29.86■■■□□ 2.37
USP48-205ENST00000421625 FHAD1B1AJZ9 1412 aa29.85■■■□□ 2.37
USP48-205ENST00000421625 MSH5O43196 834 aa29.83■■■□□ 2.37
USP48-205ENST00000421625 URB2Q14146 1524 aaKnown RBP29.82■■■□□ 2.36
USP48-205ENST00000421625 PDS5BQ9NTI5 1447 aa29.8■■■□□ 2.36
USP48-205ENST00000421625 TONSLQ96HA7 1378 aa29.78■■■□□ 2.36
USP48-205ENST00000421625 FHOD3Q2V2M9 1422 aa29.73■■■□□ 2.35
USP48-205ENST00000421625 IRX6P78412 446 aaPredicted RBP29.72■■■□□ 2.35
USP48-205ENST00000421625 KIF21AQ7Z4S6 1674 aa29.7■■■□□ 2.34
USP48-205ENST00000421625 TDRD9Q8NDG6 1382 aaKnown RBP29.69■■■□□ 2.34
USP48-205ENST00000421625 HNRNPUQ00839 825 aaKnown RBP eCLIP29.69■■■□□ 2.34
USP48-205ENST00000421625 ABCA10Q8WWZ4 1543 aa29.68■■■□□ 2.34
USP48-205ENST00000421625 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.68■■■□□ 2.34
USP48-205ENST00000421625 CCDC18Q5T9S5 1454 aa29.66■■■□□ 2.34
USP48-205ENST00000421625 FYCO1Q9BQS8 1478 aa29.65■■■□□ 2.34
USP48-205ENST00000421625 FGD6Q6ZV73 1430 aa29.62■■■□□ 2.33
USP48-205ENST00000421625 FANCIQ9NVI1 1328 aa29.6■■■□□ 2.33
USP48-205ENST00000421625 CASKIN1Q8WXD9 1431 aa29.6■■■□□ 2.33
USP48-205ENST00000421625 PTPRKQ15262 1439 aa29.59■■■□□ 2.33
USP48-205ENST00000421625 CDK11AQ9UQ88 783 aaPredicted RBP29.59■■■□□ 2.33
USP48-205ENST00000421625 UACAQ9BZF9 1416 aa29.58■■■□□ 2.33
USP48-205ENST00000421625 HFM1A2PYH4 1435 aa29.55■■■□□ 2.32
USP48-205ENST00000421625 PTPN23Q9H3S7 1636 aa29.54■■■□□ 2.32
USP48-205ENST00000421625 KDM5BQ9UGL1 1544 aa29.54■■■□□ 2.32
USP48-205ENST00000421625 AQRO60306 1485 aaKnown RBP eCLIP29.51■■■□□ 2.322e-7■■□□□ 13.5
USP48-205ENST00000421625 EFCAB5A4FU69 1503 aa29.5■■■□□ 2.31
USP48-205ENST00000421625 WASHC2AQ641Q2 1341 aa29.48■■■□□ 2.31
USP48-205ENST00000421625 NAIPQ13075 1403 aa29.47■■■□□ 2.31
USP48-205ENST00000421625 ERICH6Q7L0X2 663 aa29.46■■■□□ 2.31
USP48-205ENST00000421625 GAPVD1Q14C86 1478 aa29.44■■■□□ 2.3
USP48-205ENST00000421625 MTUS2Q5JR59 1369 aa29.44■■■□□ 2.3
USP48-205ENST00000421625 HSPA5P11021 654 aaKnown RBP29.44■■■□□ 2.3
USP48-205ENST00000421625 CCDC184Q52MB2 194 aa29.42■■■□□ 2.3
USP48-205ENST00000421625 SNAPC4Q5SXM2 1469 aa29.4■■■□□ 2.3
USP48-205ENST00000421625 FMN1Q68DA7 1419 aa29.38■■■□□ 2.29
USP48-205ENST00000421625 PPP4R2Q9NY27 417 aa29.38■■■□□ 2.29
USP48-205ENST00000421625 MRC2Q9UBG0 1479 aa29.37■■■□□ 2.29
USP48-205ENST00000421625 CTTNBP2Q8WZ74 1663 aa29.36■■■□□ 2.29
USP48-205ENST00000421625 ABCA5Q8WWZ7 1642 aa29.35■■■□□ 2.29
USP48-205ENST00000421625 ERICH6BQ5W0A0 696 aa29.34■■■□□ 2.29
USP48-205ENST00000421625 NCOA2Q15596 1464 aa29.33■■■□□ 2.29
USP48-205ENST00000421625 MYOM3Q5VTT5 1437 aa29.33■■■□□ 2.29
USP48-205ENST00000421625 LRRIQ1Q96JM4 1722 aa29.32■■■□□ 2.28
USP48-205ENST00000421625 TARBP1Q13395 1621 aaKnown RBP29.32■■■□□ 2.28
USP48-205ENST00000421625 CUL7Q14999 1698 aa29.31■■■□□ 2.28
USP48-205ENST00000421625 CNTLNQ9NXG0 1405 aa29.3■■■□□ 2.28
USP48-205ENST00000421625 B4GALNT3Q6L9W6 998 aa29.29■■■□□ 2.28
USP48-205ENST00000421625 RRP7BPQ9NSQ0 103 aa29.28■■■□□ 2.28
USP48-205ENST00000421625 EIF4G2P78344 907 aaKnown RBP eCLIP29.28■■■□□ 2.28
USP48-205ENST00000421625 PRKCSHP14314 528 aaPredicted RBP29.27■■■□□ 2.28
USP48-205ENST00000421625 FAM9BQ8IZU0 186 aa29.27■■■□□ 2.28
USP48-205ENST00000421625 ERCC6Q03468 1493 aa29.27■■■□□ 2.28
USP48-205ENST00000421625 DENND4BO75064 1496 aaPredicted RBP29.26■■■□□ 2.28
USP48-205ENST00000421625 C11orf95C9JLR9 678 aaPredicted RBP29.24■■■□□ 2.27
USP48-205ENST00000421625 CHIC2Q9UKJ5 165 aa29.24■■■□□ 2.27
USP48-205ENST00000421625 PRKRIP1Q9H875 184 aaPredicted RBP29.22■■■□□ 2.27
USP48-205ENST00000421625 ZNF608Q9ULD9 1512 aaPredicted RBP29.21■■■□□ 2.27
USP48-205ENST00000421625 SUPT6HQ7KZ85 1726 aaKnown RBP29.21■■■□□ 2.27
USP48-205ENST00000421625 MRS2Q9HD23 443 aa29.2■■■□□ 2.26
USP48-205ENST00000421625 GRIN2BQ13224 1484 aa29.19■■■□□ 2.26
USP48-205ENST00000421625 HECW1Q76N89 1606 aa29.17■■■□□ 2.26
USP48-205ENST00000421625 ZBED9Q6R2W3 1325 aa29.17■■■□□ 2.26
USP48-205ENST00000421625 CCDC7Q96M83 1385 aa29.17■■■□□ 2.26
USP48-205ENST00000421625 KDM6BO15054 1643 aa29.16■■■□□ 2.26
USP48-205ENST00000421625 SAMD9Q5K651 1589 aa29.15■■■□□ 2.26
USP48-205ENST00000421625 NCOA1Q15788 1441 aa29.15■■■□□ 2.26
USP48-205ENST00000421625 L3MBTL2Q969R5 705 aa29.15■■■□□ 2.26
USP48-205ENST00000421625 EHBP1L1Q8N3D4 1523 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms