RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 CFAP43Q8NDM7 1665 aa25.21■■□□□ 1.63
SDCBP-202ENST00000413219 TSHZ2Q9NRE2 1034 aa25.21■■□□□ 1.63
SDCBP-202ENST00000413219 CARMIL1Q5VZK9 1371 aa25.2■■□□□ 1.62
SDCBP-202ENST00000413219 PHLDB1Q86UU1 1377 aa25.18■■□□□ 1.62
SDCBP-202ENST00000413219 WDR97A6NE52 1622 aa25.16■■□□□ 1.62
SDCBP-202ENST00000413219 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.12■■□□□ 1.61
SDCBP-202ENST00000413219 KCNH8Q96L42 1107 aa25.11■■□□□ 1.61
SDCBP-202ENST00000413219 FGD5Q6ZNL6 1462 aa25.1■■□□□ 1.61
SDCBP-202ENST00000413219 PCF11O94913 1555 aaKnown RBP25.09■■□□□ 1.61
SDCBP-202ENST00000413219 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.6
SDCBP-202ENST00000413219 PPP1R15AO75807 674 aaPredicted RBP25.07■■□□□ 1.6
SDCBP-202ENST00000413219 DDX10Q13206 875 aaKnown RBP25.04■■□□□ 1.6
SDCBP-202ENST00000413219 FYCO1Q9BQS8 1478 aa25.04■■□□□ 1.6
SDCBP-202ENST00000413219 CCER2I3L3R5 266 aa25.03■■□□□ 1.6
SDCBP-202ENST00000413219 FAM50AQ14320 339 aaKnown RBP25.03■■□□□ 1.6
SDCBP-202ENST00000413219 AQRO60306 1485 aaKnown RBP eCLIP25.03■■□□□ 1.6
SDCBP-202ENST00000413219 SIN3AQ96ST3 1273 aa25.03■■□□□ 1.6
SDCBP-202ENST00000413219 EFCAB5A4FU69 1503 aa25.02■■□□□ 1.6
SDCBP-202ENST00000413219 CASKIN1Q8WXD9 1431 aa24.98■■□□□ 1.59
SDCBP-202ENST00000413219 ANP32EQ9BTT0 268 aa24.97■■□□□ 1.59
SDCBP-202ENST00000413219 FKBP8Q14318 412 aa24.93■■□□□ 1.58
SDCBP-202ENST00000413219 ANP32CO43423 234 aa24.9■■□□□ 1.58
SDCBP-202ENST00000413219 FHOD3Q2V2M9 1422 aa24.89■■□□□ 1.58
SDCBP-202ENST00000413219 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
SDCBP-202ENST00000413219 NEFLP07196 543 aa24.89■■□□□ 1.57
SDCBP-202ENST00000413219 ABCA10Q8WWZ4 1543 aa24.87■■□□□ 1.57
SDCBP-202ENST00000413219 FGD6Q6ZV73 1430 aa24.87■■□□□ 1.57
SDCBP-202ENST00000413219 CUL7Q14999 1698 aa24.86■■□□□ 1.57
SDCBP-202ENST00000413219 DNMBPQ6XZF7 1577 aa24.84■■□□□ 1.57
SDCBP-202ENST00000413219 FMN1Q68DA7 1419 aa24.84■■□□□ 1.57
SDCBP-202ENST00000413219 BCANQ96GW7 911 aa24.83■■□□□ 1.57
SDCBP-202ENST00000413219 CTTNBP2Q8WZ74 1663 aa24.83■■□□□ 1.56
SDCBP-202ENST00000413219 P3H3Q8IVL6 736 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 HFM1A2PYH4 1435 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 UACAQ9BZF9 1416 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 CCDC18Q5T9S5 1454 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 FANCD2Q9BXW9 1451 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 TONSLQ96HA7 1378 aa24.82■■□□□ 1.56
SDCBP-202ENST00000413219 ATP1B4Q9UN42 357 aaPredicted RBP24.79■■□□□ 1.56
SDCBP-202ENST00000413219 SNAPC4Q5SXM2 1469 aa24.78■■□□□ 1.56
SDCBP-202ENST00000413219 PTPN23Q9H3S7 1636 aa24.77■■□□□ 1.56
SDCBP-202ENST00000413219 POLA1P09884 1462 aaPredicted RBP24.74■■□□□ 1.55
SDCBP-202ENST00000413219 RAD54L2Q9Y4B4 1467 aa24.72■■□□□ 1.55
SDCBP-202ENST00000413219 TOPBP1Q92547 1522 aa24.72■■□□□ 1.55
SDCBP-202ENST00000413219 HIRIP3Q9BW71 556 aaPredicted RBP24.72■■□□□ 1.55
SDCBP-202ENST00000413219 TRIM52Q96A61 297 aa24.71■■□□□ 1.55
SDCBP-202ENST00000413219 MTUS2Q5JR59 1369 aa24.71■■□□□ 1.55
SDCBP-202ENST00000413219 THOC2Q8NI27 1593 aaKnown RBP24.7■■□□□ 1.54
SDCBP-202ENST00000413219 PTPRKQ15262 1439 aa24.7■■□□□ 1.54
SDCBP-202ENST00000413219 NAIPQ13075 1403 aa24.69■■□□□ 1.54
SDCBP-202ENST00000413219 SAMD9Q5K651 1589 aa24.68■■□□□ 1.54
SDCBP-202ENST00000413219 RBM19Q9Y4C8 960 aaKnown RBP24.68■■□□□ 1.54
SDCBP-202ENST00000413219 MYOM3Q5VTT5 1437 aa24.67■■□□□ 1.54
SDCBP-202ENST00000413219 KDM5BQ9UGL1 1544 aa24.66■■□□□ 1.54
SDCBP-202ENST00000413219 NCOA2Q15596 1464 aa24.64■■□□□ 1.53
SDCBP-202ENST00000413219 GRIN2BQ13224 1484 aa24.63■■□□□ 1.53
SDCBP-202ENST00000413219 EHBP1L1Q8N3D4 1523 aa24.62■■□□□ 1.53
SDCBP-202ENST00000413219 SUPT6HQ7KZ85 1726 aaKnown RBP24.62■■□□□ 1.53
SDCBP-202ENST00000413219 LRRIQ1Q96JM4 1722 aa24.59■■□□□ 1.53
SDCBP-202ENST00000413219 ARHGEF11O15085 1522 aa24.57■■□□□ 1.52
SDCBP-202ENST00000413219 UGGT2Q9NYU1 1516 aa24.56■■□□□ 1.52
SDCBP-202ENST00000413219 KIF21AQ7Z4S6 1674 aa24.55■■□□□ 1.52
SDCBP-202ENST00000413219 AKNAQ7Z591 1439 aa24.54■■□□□ 1.52
SDCBP-202ENST00000413219 HECW1Q76N89 1606 aa24.53■■□□□ 1.52
SDCBP-202ENST00000413219 TCOF1Q13428 1488 aaKnown RBP24.53■■□□□ 1.52
SDCBP-202ENST00000413219 ABCA5Q8WWZ7 1642 aa24.53■■□□□ 1.52
SDCBP-202ENST00000413219 GCC2Q8IWJ2 1684 aa24.52■■□□□ 1.52
SDCBP-202ENST00000413219 ERICH6BQ5W0A0 696 aa24.51■■□□□ 1.51
SDCBP-202ENST00000413219 HNRNPUQ00839 825 aaKnown RBP eCLIP24.49■■□□□ 1.51
SDCBP-202ENST00000413219 WASHC2AQ641Q2 1341 aa24.46■■□□□ 1.51
SDCBP-202ENST00000413219 HSPA5P11021 654 aaKnown RBP24.44■■□□□ 1.5
SDCBP-202ENST00000413219 FANCIQ9NVI1 1328 aa24.44■■□□□ 1.5
SDCBP-202ENST00000413219 URB2Q14146 1524 aaKnown RBP24.43■■□□□ 1.5
SDCBP-202ENST00000413219 DENND4BO75064 1496 aaPredicted RBP24.43■■□□□ 1.5
SDCBP-202ENST00000413219 GAPVD1Q14C86 1478 aa24.43■■□□□ 1.5
SDCBP-202ENST00000413219 CNTLNQ9NXG0 1405 aa24.43■■□□□ 1.5
SDCBP-202ENST00000413219 EIF4G2P78344 907 aaKnown RBP eCLIP24.41■■□□□ 1.5
SDCBP-202ENST00000413219 NESP48681 1621 aa24.41■■□□□ 1.5
SDCBP-202ENST00000413219 MAGI3Q5TCQ9 1506 aa24.41■■□□□ 1.5
SDCBP-202ENST00000413219 LAMC3Q9Y6N6 1575 aa24.4■■□□□ 1.5
SDCBP-202ENST00000413219 CDK11AQ9UQ88 783 aaPredicted RBP24.4■■□□□ 1.5
SDCBP-202ENST00000413219 MIA2Q96PC5 1412 aa24.38■■□□□ 1.49
SDCBP-202ENST00000413219 TDRD9Q8NDG6 1382 aaKnown RBP24.35■■□□□ 1.49
SDCBP-202ENST00000413219 NCOA1Q15788 1441 aa24.34■■□□□ 1.49
SDCBP-202ENST00000413219 RRP7BPQ9NSQ0 103 aa24.34■■□□□ 1.49
SDCBP-202ENST00000413219 MSH5O43196 834 aa24.32■■□□□ 1.48
SDCBP-202ENST00000413219 PPP4R2Q9NY27 417 aa24.32■■□□□ 1.48
SDCBP-202ENST00000413219 KDM6BO15054 1643 aa24.31■■□□□ 1.48
SDCBP-202ENST00000413219 BCL11AQ9H165 835 aa24.31■■□□□ 1.48
SDCBP-202ENST00000413219 CCDC7Q96M83 1385 aa24.3■■□□□ 1.48
SDCBP-202ENST00000413219 MPHOSPH9Q99550 1183 aa24.3■■□□□ 1.48
SDCBP-202ENST00000413219 EPRSP07814 1512 aaKnown RBP24.28■■□□□ 1.48
SDCBP-202ENST00000413219 PRKRIP1Q9H875 184 aaPredicted RBP24.27■■□□□ 1.48
SDCBP-202ENST00000413219 CHIC2Q9UKJ5 165 aa24.26■■□□□ 1.47
SDCBP-202ENST00000413219 L3MBTL2Q969R5 705 aa24.26■■□□□ 1.47
SDCBP-202ENST00000413219 ROCK1Q13464 1354 aa24.25■■□□□ 1.47
SDCBP-202ENST00000413219 ZBED9Q6R2W3 1325 aa24.25■■□□□ 1.47
SDCBP-202ENST00000413219 RPRD2Q5VT52 1461 aaKnown RBP24.25■■□□□ 1.47
SDCBP-202ENST00000413219 IRX6P78412 446 aaPredicted RBP24.24■■□□□ 1.47
SDCBP-202ENST00000413219 POLR1AO95602 1720 aaPredicted RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms