RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
PTPRA-205ENST00000399903 CARMIL1Q5VZK9 1371 aa24.49■■□□□ 1.51
PTPRA-205ENST00000399903 ERICH3Q5RHP9 1530 aa24.45■■□□□ 1.5
PTPRA-205ENST00000399903 NEFLP07196 543 aa24.43■■□□□ 1.5
PTPRA-205ENST00000399903 RBM19Q9Y4C8 960 aaKnown RBP24.42■■□□□ 1.5
PTPRA-205ENST00000399903 ARHGAP35Q9NRY4 1499 aa24.39■■□□□ 1.49
PTPRA-205ENST00000399903 TDRD9Q8NDG6 1382 aaKnown RBP24.37■■□□□ 1.49
PTPRA-205ENST00000399903 ERICH6Q7L0X2 663 aa24.35■■□□□ 1.49
PTPRA-205ENST00000399903 POLA1P09884 1462 aaPredicted RBP24.34■■□□□ 1.49
PTPRA-205ENST00000399903 TOPBP1Q92547 1522 aa24.33■■□□□ 1.49
PTPRA-205ENST00000399903 PRDM2Q13029 1718 aa24.32■■□□□ 1.48
PTPRA-205ENST00000399903 TRIM52Q96A61 297 aa24.31■■□□□ 1.48
PTPRA-205ENST00000399903 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
PTPRA-205ENST00000399903 URB2Q14146 1524 aaKnown RBP24.24■■□□□ 1.47
PTPRA-205ENST00000399903 DNMBPQ6XZF7 1577 aa24.22■■□□□ 1.47
PTPRA-205ENST00000399903 HIRIP3Q9BW71 556 aaPredicted RBP24.2■■□□□ 1.46
PTPRA-205ENST00000399903 FHOD3Q2V2M9 1422 aa24.2■■□□□ 1.46
PTPRA-205ENST00000399903 DHX57Q6P158 1386 aaKnown RBP24.18■■□□□ 1.46
PTPRA-205ENST00000399903 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
PTPRA-205ENST00000399903 IRX6P78412 446 aaPredicted RBP24.16■■□□□ 1.46
PTPRA-205ENST00000399903 MSH5O43196 834 aa24.14■■□□□ 1.46
PTPRA-205ENST00000399903 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
PTPRA-205ENST00000399903 ARID3CA6NKF2 412 aa24.13■■□□□ 1.45
PTPRA-205ENST00000399903 PDS5BQ9NTI5 1447 aa24.12■■□□□ 1.45
PTPRA-205ENST00000399903 CCNB3Q8WWL7 1395 aa24.07■■□□□ 1.44
PTPRA-205ENST00000399903 LAMC3Q9Y6N6 1575 aa24.07■■□□□ 1.44
PTPRA-205ENST00000399903 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
PTPRA-205ENST00000399903 GAPVD1Q14C86 1478 aa24.01■■□□□ 1.43
PTPRA-205ENST00000399903 AQRO60306 1485 aaKnown RBP eCLIP24■■□□□ 1.437e-8■■■■□ 24.7
PTPRA-205ENST00000399903 PHLDB1Q86UU1 1377 aa24■■□□□ 1.43
PTPRA-205ENST00000399903 CDK11AQ9UQ88 783 aaPredicted RBP23.97■■□□□ 1.43
PTPRA-205ENST00000399903 PRKCSHP14314 528 aaPredicted RBP23.96■■□□□ 1.43
PTPRA-205ENST00000399903 RRBP1Q9P2E9 1410 aaKnown RBP23.95■■□□□ 1.43
PTPRA-205ENST00000399903 PCF11O94913 1555 aaKnown RBP23.93■■□□□ 1.42
PTPRA-205ENST00000399903 TIAM1Q13009 1591 aa23.93■■□□□ 1.42
PTPRA-205ENST00000399903 LRRC9Q6ZRR7 1453 aa23.92■■□□□ 1.42
PTPRA-205ENST00000399903 ANP32CO43423 234 aa23.92■■□□□ 1.42
PTPRA-205ENST00000399903 SIN3AQ96ST3 1273 aa23.92■■□□□ 1.42
PTPRA-205ENST00000399903 FHAD1B1AJZ9 1412 aa23.91■■□□□ 1.42
PTPRA-205ENST00000399903 NBR1Q14596 966 aa23.89■■□□□ 1.41
PTPRA-205ENST00000399903 DEKP35659 375 aaKnown RBP23.86■■□□□ 1.41
PTPRA-205ENST00000399903 RAB3GAP2Q9H2M9 1393 aa23.86■■□□□ 1.41
PTPRA-205ENST00000399903 FBLN2P98095 1184 aa23.85■■□□□ 1.41
PTPRA-205ENST00000399903 HNRNPUQ00839 825 aaKnown RBP eCLIP23.82■■□□□ 1.4
PTPRA-205ENST00000399903 ZNF608Q9ULD9 1512 aaPredicted RBP23.81■■□□□ 1.4
PTPRA-205ENST00000399903 MTUS2Q5JR59 1369 aa23.81■■□□□ 1.4
PTPRA-205ENST00000399903 CUL7Q14999 1698 aa23.8■■□□□ 1.4
PTPRA-205ENST00000399903 ABCA5Q8WWZ7 1642 aa23.79■■□□□ 1.4
PTPRA-205ENST00000399903 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
PTPRA-205ENST00000399903 CASKIN1Q8WXD9 1431 aa23.75■■□□□ 1.39
PTPRA-205ENST00000399903 MRC2Q9UBG0 1479 aa23.73■■□□□ 1.39
PTPRA-205ENST00000399903 TARBP1Q13395 1621 aaKnown RBP23.73■■□□□ 1.39
PTPRA-205ENST00000399903 CTTNBP2Q8WZ74 1663 aa23.72■■□□□ 1.39
PTPRA-205ENST00000399903 FMN1Q68DA7 1419 aa23.72■■□□□ 1.39
PTPRA-205ENST00000399903 ERCC6Q03468 1493 aa23.72■■□□□ 1.39
PTPRA-205ENST00000399903 CHIC2Q9UKJ5 165 aa23.71■■□□□ 1.39
PTPRA-205ENST00000399903 FANCIQ9NVI1 1328 aa23.71■■□□□ 1.39
PTPRA-205ENST00000399903 FYCO1Q9BQS8 1478 aa23.7■■□□□ 1.38
PTPRA-205ENST00000399903 EFCAB5A4FU69 1503 aa23.68■■□□□ 1.38
PTPRA-205ENST00000399903 ANO8Q9HCE9 1232 aaPredicted RBP23.68■■□□□ 1.38
PTPRA-205ENST00000399903 SETD5Q9C0A6 1442 aa23.68■■□□□ 1.38
PTPRA-205ENST00000399903 PPP1R15AO75807 674 aaPredicted RBP23.68■■□□□ 1.38
PTPRA-205ENST00000399903 SNAPC4Q5SXM2 1469 aa23.66■■□□□ 1.38
PTPRA-205ENST00000399903 B4GALNT3Q6L9W6 998 aa23.65■■□□□ 1.38
PTPRA-205ENST00000399903 MAP3K1Q13233 1512 aa23.65■■□□□ 1.38
PTPRA-205ENST00000399903 RRP7BPQ9NSQ0 103 aa23.62■■□□□ 1.37
PTPRA-205ENST00000399903 CCER2I3L3R5 266 aa23.61■■□□□ 1.37
PTPRA-205ENST00000399903 CFAP43Q8NDM7 1665 aa23.61■■□□□ 1.37
PTPRA-205ENST00000399903 CHMP7Q8WUX9 453 aaPredicted RBP23.6■■□□□ 1.37
PTPRA-205ENST00000399903 RTN4Q9NQC3 1192 aaKnown RBP23.59■■□□□ 1.37
PTPRA-205ENST00000399903 GRIN2BQ13224 1484 aa23.58■■□□□ 1.37
PTPRA-205ENST00000399903 CNGB1Q14028 1251 aaPredicted RBP23.58■■□□□ 1.36
PTPRA-205ENST00000399903 FGD6Q6ZV73 1430 aa23.57■■□□□ 1.36
PTPRA-205ENST00000399903 PTPRKQ15262 1439 aa23.56■■□□□ 1.36
PTPRA-205ENST00000399903 NCOA2Q15596 1464 aa23.55■■□□□ 1.36
PTPRA-205ENST00000399903 PBRM1Q86U86 1689 aa23.55■■□□□ 1.36
PTPRA-205ENST00000399903 SAMD9Q5K651 1589 aa23.53■■□□□ 1.36
PTPRA-205ENST00000399903 MAPKBP1O60336 1514 aa23.53■■□□□ 1.36
PTPRA-205ENST00000399903 CDK13Q14004 1512 aaKnown RBP23.53■■□□□ 1.36
PTPRA-205ENST00000399903 CCDC136Q96JN2 1154 aa23.53■■□□□ 1.36
PTPRA-205ENST00000399903 PAK3O75914 559 aaPredicted RBP23.51■■□□□ 1.35
PTPRA-205ENST00000399903 LRRIQ1Q96JM4 1722 aa23.51■■□□□ 1.35
PTPRA-205ENST00000399903 NOP58Q9Y2X3 529 aaKnown RBP23.51■■□□□ 1.35
PTPRA-205ENST00000399903 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
PTPRA-205ENST00000399903 ADAMTS12P58397 1594 aa23.5■■□□□ 1.35
PTPRA-205ENST00000399903 MYT1LQ9UL68 1186 aa23.5■■□□□ 1.35
PTPRA-205ENST00000399903 MAGI3Q5TCQ9 1506 aa23.5■■□□□ 1.35
PTPRA-205ENST00000399903 RTL5Q5HYW3 569 aaPredicted RBP23.49■■□□□ 1.35
PTPRA-205ENST00000399903 FAM9BQ8IZU0 186 aa23.49■■□□□ 1.35
PTPRA-205ENST00000399903 IQGAP2Q13576 1575 aa23.49■■□□□ 1.35
PTPRA-205ENST00000399903 PPP4R2Q9NY27 417 aa23.48■■□□□ 1.35
PTPRA-205ENST00000399903 SENP3-EIF4A1A0A087X0R7 540 aa23.46■■□□□ 1.35
PTPRA-205ENST00000399903 SALL2Q9Y467 1007 aaPredicted RBP23.46■■□□□ 1.35
PTPRA-205ENST00000399903 ZNF644Q9H582 1327 aaPredicted RBP23.44■■□□□ 1.34
PTPRA-205ENST00000399903 MYOM3Q5VTT5 1437 aa23.44■■□□□ 1.34
PTPRA-205ENST00000399903 WDR62O43379 1518 aa23.43■■□□□ 1.34
PTPRA-205ENST00000399903 FOXD1Q16676 465 aa23.41■■□□□ 1.34
PTPRA-205ENST00000399903 ZNF777Q9ULD5 760 aaPredicted RBP23.4■■□□□ 1.34
PTPRA-205ENST00000399903 EPRSP07814 1512 aaKnown RBP23.4■■□□□ 1.34
PTPRA-205ENST00000399903 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms