RNA–Protein interactions for RNA: ENST00000333617.8

LSAMP-201, Transcript of limbic system associated membrane protein, humanhuman

TSL 2

Gene LSAMP, Length 1,561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-201ENST00000333617 FXR2P51116 673 aaKnown RBP eCLIP14.32□□□□□ -0.12
LSAMP-201ENST00000333617 BAZ1BQ9UIG0 1483 aaKnown RBP14.29□□□□□ -0.12
LSAMP-201ENST00000333617 CLEC11AQ9Y240 323 aa14.29□□□□□ -0.12
LSAMP-201ENST00000333617 GABBR2O75899 941 aa14.23□□□□□ -0.13
LSAMP-201ENST00000333617 POTEGQ6S5H5 508 aa14.23□□□□□ -0.13
LSAMP-201ENST00000333617 LOC105371045A0A1W2PR82 267 aa14.22□□□□□ -0.13
LSAMP-201ENST00000333617 ABCC8Q09428 1581 aa14.21□□□□□ -0.14
LSAMP-201ENST00000333617 HMGXB3Q12766 1538 aa14.19□□□□□ -0.14
LSAMP-201ENST00000333617 SPDYE4A6NLX3 237 aa14.18□□□□□ -0.14
LSAMP-201ENST00000333617 NCAPD3P42695 1498 aa14.16□□□□□ -0.14
LSAMP-201ENST00000333617 FAM9AQ8IZU1 332 aaPredicted RBP14.12□□□□□ -0.15
LSAMP-201ENST00000333617 PRR29P0C7W0 189 aa14.11□□□□□ -0.15
LSAMP-201ENST00000333617 PRKAR2AP13861 404 aaKnown RBP14.1□□□□□ -0.15
LSAMP-201ENST00000333617 PRDM2Q13029 1718 aa14.05□□□□□ -0.16
LSAMP-201ENST00000333617 CC2D2AQ9P2K1 1620 aa14.03□□□□□ -0.16
LSAMP-201ENST00000333617 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
LSAMP-201ENST00000333617 SYNJ1O43426 1573 aa14.02□□□□□ -0.17
LSAMP-201ENST00000333617 STAG3Q9UJ98 1225 aa14.01□□□□□ -0.17
LSAMP-201ENST00000333617 CHADLQ6NUI6 762 aa13.96□□□□□ -0.17
LSAMP-201ENST00000333617 EEA1Q15075 1411 aa13.96□□□□□ -0.18
LSAMP-201ENST00000333617 BIVM-ERCC5R4GMW8 1640 aa13.95□□□□□ -0.18
LSAMP-201ENST00000333617 C19orf67A6NJJ6 358 aa13.95□□□□□ -0.18
LSAMP-201ENST00000333617 TOP2BQ02880 1626 aa13.94□□□□□ -0.18
LSAMP-201ENST00000333617 SOGA1O94964 1423 aa13.94□□□□□ -0.18
LSAMP-201ENST00000333617 CFTRP13569 1480 aa13.92□□□□□ -0.18
LSAMP-201ENST00000333617 RUSC2Q8N2Y8 1516 aa13.89□□□□□ -0.19
LSAMP-201ENST00000333617 POTEIP0CG38 1075 aa13.88□□□□□ -0.19
LSAMP-201ENST00000333617 PROM2Q8N271 834 aa13.87□□□□□ -0.19
LSAMP-201ENST00000333617 PCGF6Q9BYE7 350 aa13.83□□□□□ -0.2
LSAMP-201ENST00000333617 KIF21BO75037 1637 aa13.82□□□□□ -0.2
LSAMP-201ENST00000333617 FARP1Q9Y4F1 1045 aaPredicted RBP13.82□□□□□ -0.2
LSAMP-201ENST00000333617 CUX1P39880 1505 aa13.81□□□□□ -0.2
LSAMP-201ENST00000333617 CADPSQ9ULU8 1353 aa13.81□□□□□ -0.2
LSAMP-201ENST00000333617 GOLGA3Q08378 1498 aa13.8□□□□□ -0.2
LSAMP-201ENST00000333617 CREBZFQ9NS37 354 aa13.79□□□□□ -0.2
LSAMP-201ENST00000333617 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.2
LSAMP-201ENST00000333617 OTUD5Q96G74 571 aa13.77□□□□□ -0.21
LSAMP-201ENST00000333617 CEP164Q9UPV0 1460 aa13.76□□□□□ -0.21
LSAMP-201ENST00000333617 TRIM26Q12899 539 aaPredicted RBP13.75□□□□□ -0.21
LSAMP-201ENST00000333617 CEP162Q5TB80 1403 aa13.73□□□□□ -0.21
LSAMP-201ENST00000333617 FKBP8Q14318 412 aa13.72□□□□□ -0.21
LSAMP-201ENST00000333617 UBTFP17480 764 aaKnown RBP13.71□□□□□ -0.21
LSAMP-201ENST00000333617 LAMC3Q9Y6N6 1575 aa13.7□□□□□ -0.22
LSAMP-201ENST00000333617 FANCD2Q9BXW9 1451 aa13.69□□□□□ -0.22
LSAMP-201ENST00000333617 CD44P16070 742 aaKnown RBP13.67□□□□□ -0.22
LSAMP-201ENST00000333617 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
LSAMP-201ENST00000333617 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
LSAMP-201ENST00000333617 ERICH3Q5RHP9 1530 aa13.66□□□□□ -0.22
LSAMP-201ENST00000333617 NESP48681 1621 aa13.66□□□□□ -0.22
LSAMP-201ENST00000333617 DNMBPQ6XZF7 1577 aa13.64□□□□□ -0.23
LSAMP-201ENST00000333617 FGD5Q6ZNL6 1462 aa13.63□□□□□ -0.23
LSAMP-201ENST00000333617 PRXQ9BXM0 1461 aa13.62□□□□□ -0.23
LSAMP-201ENST00000333617 HRCP23327 699 aa13.62□□□□□ -0.23
LSAMP-201ENST00000333617 NPM1P06748 294 aaKnown RBP eCLIP13.6□□□□□ -0.23
LSAMP-201ENST00000333617 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
LSAMP-201ENST00000333617 TOPBP1Q92547 1522 aa13.58□□□□□ -0.24
LSAMP-201ENST00000333617 CUX2O14529 1486 aa13.58□□□□□ -0.24
LSAMP-201ENST00000333617 CLIP1P30622 1438 aa13.57□□□□□ -0.24
LSAMP-201ENST00000333617 MNX1P50219 401 aaPredicted RBP13.57□□□□□ -0.24
LSAMP-201ENST00000333617 PPARGC1BQ86YN6 1023 aaKnown RBP13.54□□□□□ -0.24
LSAMP-201ENST00000333617 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
LSAMP-201ENST00000333617 PLEKHG5O94827 1062 aa13.53□□□□□ -0.24
LSAMP-201ENST00000333617 WDR97A6NE52 1622 aa13.52□□□□□ -0.24
LSAMP-201ENST00000333617 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
LSAMP-201ENST00000333617 MIER1Q8N108 512 aa13.52□□□□□ -0.25
LSAMP-201ENST00000333617 ZRANB1Q9UGI0 708 aa13.52□□□□□ -0.25
LSAMP-201ENST00000333617 URB2Q14146 1524 aaKnown RBP13.51□□□□□ -0.25
LSAMP-201ENST00000333617 PAK3O75914 559 aaPredicted RBP13.5□□□□□ -0.25
LSAMP-201ENST00000333617 ABCA10Q8WWZ4 1543 aa13.5□□□□□ -0.25
LSAMP-201ENST00000333617 CLCN6P51797 869 aa13.49□□□□□ -0.25
LSAMP-201ENST00000333617 IGF1RP08069 1367 aa13.49□□□□□ -0.25
LSAMP-201ENST00000333617 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
LSAMP-201ENST00000333617 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
LSAMP-201ENST00000333617 ZNF579Q8NAF0 562 aaKnown RBP13.48□□□□□ -0.25
LSAMP-201ENST00000333617 CUL7Q14999 1698 aa13.46□□□□□ -0.25
LSAMP-201ENST00000333617 PLCD3Q8N3E9 789 aa13.45□□□□□ -0.26
LSAMP-201ENST00000333617 CARMIL1Q5VZK9 1371 aa13.44□□□□□ -0.26
LSAMP-201ENST00000333617 RANGAP1P46060 587 aaPredicted RBP13.44□□□□□ -0.26
LSAMP-201ENST00000333617 FBXO3Q9UK99 471 aa13.42□□□□□ -0.26
LSAMP-201ENST00000333617 ARAP1Q96P48 1450 aa13.42□□□□□ -0.26
LSAMP-201ENST00000333617 ABCA5Q8WWZ7 1642 aa13.42□□□□□ -0.26
LSAMP-201ENST00000333617 CTTNBP2Q8WZ74 1663 aa13.41□□□□□ -0.26
LSAMP-201ENST00000333617 DCBLD2Q96PD2 775 aa13.41□□□□□ -0.26
LSAMP-201ENST00000333617 TTBK1Q5TCY1 1321 aaPredicted RBP13.4□□□□□ -0.26
LSAMP-201ENST00000333617 TARBP1Q13395 1621 aaKnown RBP13.38□□□□□ -0.27
LSAMP-201ENST00000333617 ARHGAP35Q9NRY4 1499 aa13.37□□□□□ -0.27
LSAMP-201ENST00000333617 PBRM1Q86U86 1689 aa13.36□□□□□ -0.27
LSAMP-201ENST00000333617 MRC2Q9UBG0 1479 aa13.36□□□□□ -0.27
LSAMP-201ENST00000333617 LCE2DQ5TA82 110 aaPredicted RBP13.36□□□□□ -0.27
LSAMP-201ENST00000333617 ZBTB47Q9UFB7 747 aaPredicted RBP13.36□□□□□ -0.27
LSAMP-201ENST00000333617 POTEB2H3BUK9 544 aa13.34□□□□□ -0.27
LSAMP-201ENST00000333617 ZEB1P37275 1124 aaPredicted RBP13.34□□□□□ -0.27
LSAMP-201ENST00000333617 GAPVD1Q14C86 1478 aa13.34□□□□□ -0.27
LSAMP-201ENST00000333617 PHF12Q96QT6 1004 aa13.33□□□□□ -0.28
LSAMP-201ENST00000333617 TSPYL2Q9H2G4 693 aaPredicted RBP13.32□□□□□ -0.28
LSAMP-201ENST00000333617 TDRD9Q8NDG6 1382 aaKnown RBP13.31□□□□□ -0.28
LSAMP-201ENST00000333617 WDR62O43379 1518 aa13.3□□□□□ -0.28
LSAMP-201ENST00000333617 EFCAB5A4FU69 1503 aa13.27□□□□□ -0.28
LSAMP-201ENST00000333617 GALR2O43603 387 aaPredicted RBP13.26□□□□□ -0.29
LSAMP-201ENST00000333617 RASEFQ8IZ41 740 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms