RNA–Protein interactions for RNA: ENST00000333617.8

LSAMP-201, Transcript of limbic system associated membrane protein, humanhuman

TSL 2

Gene LSAMP, Length 1,561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-201ENST00000333617 AEBP2Q6ZN18 517 aaPredicted RBP26.53■■□□□ 1.84
LSAMP-201ENST00000333617 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
LSAMP-201ENST00000333617 POTEDQ86YR6 584 aa23.87■■□□□ 1.41
LSAMP-201ENST00000333617 SENP3Q9H4L4 574 aaPredicted RBP22.67■■□□□ 1.22
LSAMP-201ENST00000333617 PHF23Q9BUL5 403 aaPredicted RBP22.38■■□□□ 1.17
LSAMP-201ENST00000333617 FOXD1Q16676 465 aa21.29■■□□□ 1
LSAMP-201ENST00000333617 MSH5O43196 834 aa20.88■□□□□ 0.93
LSAMP-201ENST00000333617 PLPPR3Q6T4P5 718 aa20.5■□□□□ 0.87
LSAMP-201ENST00000333617 PPP6R1Q9UPN7 881 aa19.84■□□□□ 0.77
LSAMP-201ENST00000333617 ADRA2BP18089 450 aa19.82■□□□□ 0.76
LSAMP-201ENST00000333617 PIAS4Q8N2W9 510 aaPredicted RBP19.74■□□□□ 0.75
LSAMP-201ENST00000333617 CACNB1Q02641 598 aaPredicted RBP19.12■□□□□ 0.65
LSAMP-201ENST00000333617 NISCHQ9Y2I1 1504 aa19.12■□□□□ 0.65
LSAMP-201ENST00000333617 POTEHQ6S545 545 aa18.3■□□□□ 0.52
LSAMP-201ENST00000333617 SCAF1Q9H7N4 1312 aaKnown RBP18.21■□□□□ 0.51
LSAMP-201ENST00000333617 MAPK8IP2Q13387 824 aaPredicted RBP18.12■□□□□ 0.49
LSAMP-201ENST00000333617 DMRT2Q9Y5R5 561 aa18■□□□□ 0.47
LSAMP-201ENST00000333617 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
LSAMP-201ENST00000333617 CNKSR2Q8WXI2 1034 aa17.6■□□□□ 0.41
LSAMP-201ENST00000333617 RNF39Q9H2S5 420 aa17.55■□□□□ 0.4
LSAMP-201ENST00000333617 HOXD11P31277 338 aaPredicted RBP17.42■□□□□ 0.38
LSAMP-201ENST00000333617 NCBP3Q53F19 620 aaKnown RBP17.42■□□□□ 0.38
LSAMP-201ENST00000333617 RNF216Q9NWF9 866 aaPredicted RBP17.37■□□□□ 0.37
LSAMP-201ENST00000333617 DCAF8L1A6NGE4 600 aa17.25■□□□□ 0.35
LSAMP-201ENST00000333617 C1QBPQ07021 282 aaKnown RBP17.23■□□□□ 0.35
LSAMP-201ENST00000333617 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
LSAMP-201ENST00000333617 KCNA4P22459 653 aa16.98■□□□□ 0.31
LSAMP-201ENST00000333617 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
LSAMP-201ENST00000333617 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.64■□□□□ 0.25
LSAMP-201ENST00000333617 CCDC180Q9P1Z9 1646 aa16.64■□□□□ 0.25
LSAMP-201ENST00000333617 U3KPZ7 1027 aaPredicted RBP16.26■□□□□ 0.19
LSAMP-201ENST00000333617 SLC4A2P04920 1241 aa16.25■□□□□ 0.19
LSAMP-201ENST00000333617 SP7Q8TDD2 431 aaPredicted RBP16.18■□□□□ 0.18
LSAMP-201ENST00000333617 SLC4A1APQ9BWU0 796 aaKnown RBP16.12■□□□□ 0.17
LSAMP-201ENST00000333617 ZCCHC6Q5VYS8 1495 aaKnown RBP16.11■□□□□ 0.17
LSAMP-201ENST00000333617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.96■□□□□ 0.15
LSAMP-201ENST00000333617 HNRNPUL2Q1KMD3 747 aaKnown RBP15.96■□□□□ 0.15
LSAMP-201ENST00000333617 CAPN15O75808 1086 aa15.95■□□□□ 0.14
LSAMP-201ENST00000333617 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
LSAMP-201ENST00000333617 APLP2Q06481 763 aa15.94■□□□□ 0.14
LSAMP-201ENST00000333617 PLSCR2Q9NRY7 297 aa15.92■□□□□ 0.14
LSAMP-201ENST00000333617 SAMD1Q6SPF0 538 aaPredicted RBP15.87■□□□□ 0.13
LSAMP-201ENST00000333617 MYCNP04198 464 aaPredicted RBP15.84■□□□□ 0.13
LSAMP-201ENST00000333617 DCAF1Q9Y4B6 1507 aa15.8■□□□□ 0.12
LSAMP-201ENST00000333617 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
LSAMP-201ENST00000333617 SHROOM4Q9ULL8 1493 aa15.78■□□□□ 0.12
LSAMP-201ENST00000333617 DSG3P32926 999 aa15.77■□□□□ 0.11
LSAMP-201ENST00000333617 TRHP20396 242 aaPredicted RBP15.75■□□□□ 0.11
LSAMP-201ENST00000333617 ZNF219Q9P2Y4 722 aaPredicted RBP15.75■□□□□ 0.11
LSAMP-201ENST00000333617 DCAF8L2P0C7V8 631 aa15.72■□□□□ 0.11
LSAMP-201ENST00000333617 ZBTB22O15209 634 aa15.6■□□□□ 0.09
LSAMP-201ENST00000333617 ABCB7O75027 752 aa15.58■□□□□ 0.08
LSAMP-201ENST00000333617 CHRDL2Q6WN34 429 aa15.56■□□□□ 0.08
LSAMP-201ENST00000333617 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
LSAMP-201ENST00000333617 ABCC9O60706 1549 aa15.46■□□□□ 0.07
LSAMP-201ENST00000333617 ATF5Q9Y2D1 282 aaPredicted RBP15.4■□□□□ 0.06
LSAMP-201ENST00000333617 NACADO15069 1562 aa15.39■□□□□ 0.05
LSAMP-201ENST00000333617 POLA2Q14181 598 aa15.37■□□□□ 0.05
LSAMP-201ENST00000333617 SCRIBQ14160 1630 aa15.33■□□□□ 0.04
LSAMP-201ENST00000333617 ATXN8OSP0DMR3 200 aa15.32■□□□□ 0.04
LSAMP-201ENST00000333617 SUPT5HO00267 1087 aaKnown RBP15.3■□□□□ 0.04
LSAMP-201ENST00000333617 RB1CC1Q8TDY2 1594 aa15.22■□□□□ 0.03
LSAMP-201ENST00000333617 RBM42Q9BTD8 480 aaKnown RBP15.15■□□□□ 0.02
LSAMP-201ENST00000333617 ZBTB12Q9Y330 459 aaPredicted RBP15.15■□□□□ 0.02
LSAMP-201ENST00000333617 LHX8Q68G74 356 aa15.13■□□□□ 0.01
LSAMP-201ENST00000333617 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
LSAMP-201ENST00000333617 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
LSAMP-201ENST00000333617 UNC13AQ9UPW8 1703 aa15.07■□□□□ 0
LSAMP-201ENST00000333617 HAX1O00165 279 aa15.01□□□□□ -0.01
LSAMP-201ENST00000333617 RSF1Q96T23 1441 aaPredicted RBP14.91□□□□□ -0.02
LSAMP-201ENST00000333617 FBLN2P98095 1184 aa14.87□□□□□ -0.03
LSAMP-201ENST00000333617 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
LSAMP-201ENST00000333617 CECR2Q9BXF3 1484 aa14.83□□□□□ -0.03
LSAMP-201ENST00000333617 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
LSAMP-201ENST00000333617 AKT1S1Q96B36 256 aa14.79□□□□□ -0.04
LSAMP-201ENST00000333617 BAZ1AQ9NRL2 1556 aaPredicted RBP14.76□□□□□ -0.05
LSAMP-201ENST00000333617 WIZO95785 1651 aa14.75□□□□□ -0.05
LSAMP-201ENST00000333617 BICRAQ9NZM4 1560 aa14.74□□□□□ -0.05
LSAMP-201ENST00000333617 MKRN4PQ13434 485 aaPredicted RBP14.72□□□□□ -0.05
LSAMP-201ENST00000333617 PIP4P2Q8N4L2 257 aa14.71□□□□□ -0.05
LSAMP-201ENST00000333617 SMARCA4P51532 1647 aa14.7□□□□□ -0.06
LSAMP-201ENST00000333617 SPDYE2BA6NHP3 402 aa14.67□□□□□ -0.06
LSAMP-201ENST00000333617 SPDYE6P0CI01 402 aa14.67□□□□□ -0.06
LSAMP-201ENST00000333617 SPDYE2Q495Y8 402 aa14.67□□□□□ -0.06
LSAMP-201ENST00000333617 REM2Q8IYK8 340 aaPredicted RBP14.63□□□□□ -0.07
LSAMP-201ENST00000333617 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
LSAMP-201ENST00000333617 EVX2Q03828 476 aa14.59□□□□□ -0.07
LSAMP-201ENST00000333617 TOP2AP11388 1531 aaKnown RBP14.55□□□□□ -0.08
LSAMP-201ENST00000333617 ZNF692Q9BU19 519 aaPredicted RBP14.52□□□□□ -0.08
LSAMP-201ENST00000333617 PEG3Q9GZU2 1588 aa14.48□□□□□ -0.09
LSAMP-201ENST00000333617 SSUH2Q9Y2M2 353 aa14.47□□□□□ -0.09
LSAMP-201ENST00000333617 PITPNM1O00562 1244 aa14.46□□□□□ -0.09
LSAMP-201ENST00000333617 SMARCA2P51531 1590 aa14.44□□□□□ -0.1
LSAMP-201ENST00000333617 EIF4G1Q04637 1599 aaKnown RBP14.42□□□□□ -0.1
LSAMP-201ENST00000333617 CCDC88BA6NC98 1476 aa14.39□□□□□ -0.11
LSAMP-201ENST00000333617 PCDH10Q9P2E7 1040 aa14.39□□□□□ -0.11
LSAMP-201ENST00000333617 POTEMA6NI47 508 aa14.36□□□□□ -0.11
LSAMP-201ENST00000333617 SPDYE1Q8NFV5 336 aaPredicted RBP14.36□□□□□ -0.11
LSAMP-201ENST00000333617 TRIM41Q8WV44 630 aa14.35□□□□□ -0.11
LSAMP-201ENST00000333617 ATAD2BQ9ULI0 1458 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms