RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 WDR97A6NE52 1622 aa17.8■□□□□ 0.44
NUP88-201ENST00000225696 HIRIP3Q9BW71 556 aaPredicted RBP17.79■□□□□ 0.44
NUP88-201ENST00000225696 TIAM1Q13009 1591 aa17.79■□□□□ 0.44
NUP88-201ENST00000225696 SETD5Q9C0A6 1442 aa17.78■□□□□ 0.44
NUP88-201ENST00000225696 FAM50AQ14320 339 aaKnown RBP17.77■□□□□ 0.43
NUP88-201ENST00000225696 P3H3Q8IVL6 736 aa17.75■□□□□ 0.43
NUP88-201ENST00000225696 LRRC9Q6ZRR7 1453 aa17.75■□□□□ 0.43
NUP88-201ENST00000225696 CADPSQ9ULU8 1353 aa17.74■□□□□ 0.43
NUP88-201ENST00000225696 PRDM2Q13029 1718 aa17.73■□□□□ 0.43
NUP88-201ENST00000225696 FKBP8Q14318 412 aa17.72■□□□□ 0.43
NUP88-201ENST00000225696 PPP1R15AO75807 674 aaPredicted RBP17.72■□□□□ 0.43
NUP88-201ENST00000225696 CARMIL1Q5VZK9 1371 aa17.72■□□□□ 0.43
NUP88-201ENST00000225696 ATP1B4Q9UN42 357 aaPredicted RBP17.7■□□□□ 0.42
NUP88-201ENST00000225696 MAP3K1Q13233 1512 aa17.69■□□□□ 0.42
NUP88-201ENST00000225696 LAMC3Q9Y6N6 1575 aa17.66■□□□□ 0.42
NUP88-201ENST00000225696 TRIM52Q96A61 297 aa17.66■□□□□ 0.42
NUP88-201ENST00000225696 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
NUP88-201ENST00000225696 PCF11O94913 1555 aaKnown RBP17.63■□□□□ 0.41
NUP88-201ENST00000225696 ANP32EQ9BTT0 268 aa17.63■□□□□ 0.41
NUP88-201ENST00000225696 FHOD3Q2V2M9 1422 aa17.6■□□□□ 0.41
NUP88-201ENST00000225696 CFAP43Q8NDM7 1665 aa17.57■□□□□ 0.4
NUP88-201ENST00000225696 FHAD1B1AJZ9 1412 aa17.57■□□□□ 0.4
NUP88-201ENST00000225696 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
NUP88-201ENST00000225696 TIMELESSQ9UNS1 1208 aa17.54■□□□□ 0.4
NUP88-201ENST00000225696 ANP32CO43423 234 aa17.53■□□□□ 0.4
NUP88-201ENST00000225696 CCER2I3L3R5 266 aa17.52■□□□□ 0.4
NUP88-201ENST00000225696 FANCD2Q9BXW9 1451 aa17.52■□□□□ 0.39
NUP88-201ENST00000225696 PDS5BQ9NTI5 1447 aa17.51■□□□□ 0.39
NUP88-201ENST00000225696 RBM19Q9Y4C8 960 aaKnown RBP17.51■□□□□ 0.39
NUP88-201ENST00000225696 PTPRKQ15262 1439 aa17.51■□□□□ 0.39
NUP88-201ENST00000225696 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
NUP88-201ENST00000225696 NEFLP07196 543 aa17.47■□□□□ 0.39
NUP88-201ENST00000225696 FYCO1Q9BQS8 1478 aa17.47■□□□□ 0.39
NUP88-201ENST00000225696 CASKIN1Q8WXD9 1431 aa17.47■□□□□ 0.39
NUP88-201ENST00000225696 TONSLQ96HA7 1378 aa17.47■□□□□ 0.39
NUP88-201ENST00000225696 NESP48681 1621 aa17.46■□□□□ 0.39
NUP88-201ENST00000225696 FGD6Q6ZV73 1430 aa17.46■□□□□ 0.38
NUP88-201ENST00000225696 CCDC18Q5T9S5 1454 aa17.44■□□□□ 0.38
NUP88-201ENST00000225696 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.44■□□□□ 0.38
NUP88-201ENST00000225696 AQRO60306 1485 aaKnown RBP eCLIP17.43■□□□□ 0.381e-8■■■□□ 16.2
NUP88-201ENST00000225696 IRX6P78412 446 aaPredicted RBP17.4■□□□□ 0.38
NUP88-201ENST00000225696 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
NUP88-201ENST00000225696 HFM1A2PYH4 1435 aa17.39■□□□□ 0.37
NUP88-201ENST00000225696 UACAQ9BZF9 1416 aa17.39■□□□□ 0.37
NUP88-201ENST00000225696 SNAPC4Q5SXM2 1469 aa17.39■□□□□ 0.37
NUP88-201ENST00000225696 KDM5BQ9UGL1 1544 aa17.38■□□□□ 0.37
NUP88-201ENST00000225696 POLA1P09884 1462 aaPredicted RBP17.38■□□□□ 0.37
NUP88-201ENST00000225696 EFCAB5A4FU69 1503 aa17.37■□□□□ 0.37
NUP88-201ENST00000225696 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
NUP88-201ENST00000225696 PTPN23Q9H3S7 1636 aa17.37■□□□□ 0.37
NUP88-201ENST00000225696 NAIPQ13075 1403 aa17.37■□□□□ 0.37
NUP88-201ENST00000225696 ABCA10Q8WWZ4 1543 aa17.36■□□□□ 0.37
NUP88-201ENST00000225696 MSH5O43196 834 aa17.36■□□□□ 0.37
NUP88-201ENST00000225696 HNRNPUQ00839 825 aaKnown RBP eCLIP17.36■□□□□ 0.37
NUP88-201ENST00000225696 LRRIQ1Q96JM4 1722 aa17.34■□□□□ 0.37
NUP88-201ENST00000225696 WASHC2AQ641Q2 1341 aa17.33■□□□□ 0.37
NUP88-201ENST00000225696 TOPBP1Q92547 1522 aa17.33■□□□□ 0.36
NUP88-201ENST00000225696 FMN1Q68DA7 1419 aa17.33■□□□□ 0.36
NUP88-201ENST00000225696 CCDC184Q52MB2 194 aa17.32■□□□□ 0.36
NUP88-201ENST00000225696 NCOA2Q15596 1464 aa17.32■□□□□ 0.36
NUP88-201ENST00000225696 RRP7BPQ9NSQ0 103 aa17.32■□□□□ 0.36
NUP88-201ENST00000225696 CHIC2Q9UKJ5 165 aa17.31■□□□□ 0.36
NUP88-201ENST00000225696 KIF21AQ7Z4S6 1674 aa17.31■□□□□ 0.36
NUP88-201ENST00000225696 CTTNBP2Q8WZ74 1663 aa17.31■□□□□ 0.36
NUP88-201ENST00000225696 HSPA5P11021 654 aaKnown RBP17.3■□□□□ 0.36
NUP88-201ENST00000225696 MYOM3Q5VTT5 1437 aa17.29■□□□□ 0.36
NUP88-201ENST00000225696 DENND4BO75064 1496 aaPredicted RBP17.29■□□□□ 0.36
NUP88-201ENST00000225696 BCL11AQ9H165 835 aa17.28■□□□□ 0.36
NUP88-201ENST00000225696 MRC2Q9UBG0 1479 aa17.27■□□□□ 0.36
NUP88-201ENST00000225696 URB2Q14146 1524 aaKnown RBP17.27■□□□□ 0.36
NUP88-201ENST00000225696 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
NUP88-201ENST00000225696 CUL7Q14999 1698 aa17.26■□□□□ 0.35
NUP88-201ENST00000225696 C11orf95C9JLR9 678 aaPredicted RBP17.26■□□□□ 0.35
NUP88-201ENST00000225696 GRIN2BQ13224 1484 aa17.25■□□□□ 0.35
NUP88-201ENST00000225696 MAGI3Q5TCQ9 1506 aa17.24■□□□□ 0.35
NUP88-201ENST00000225696 FOXD1Q16676 465 aa17.24■□□□□ 0.35
NUP88-201ENST00000225696 KDM6BO15054 1643 aa17.23■□□□□ 0.35
NUP88-201ENST00000225696 SAMD9Q5K651 1589 aa17.22■□□□□ 0.35
NUP88-201ENST00000225696 L3MBTL2Q969R5 705 aa17.19■□□□□ 0.34
NUP88-201ENST00000225696 WDR62O43379 1518 aa17.19■□□□□ 0.34
NUP88-201ENST00000225696 ERCC6Q03468 1493 aa17.19■□□□□ 0.34
NUP88-201ENST00000225696 SUPT6HQ7KZ85 1726 aaKnown RBP17.18■□□□□ 0.34
NUP88-201ENST00000225696 UGGT2Q9NYU1 1516 aa17.18■□□□□ 0.34
NUP88-201ENST00000225696 EIF4G2P78344 907 aaKnown RBP eCLIP17.18■□□□□ 0.34
NUP88-201ENST00000225696 ARID3CA6NKF2 412 aa17.17■□□□□ 0.34
NUP88-201ENST00000225696 FAM9BQ8IZU0 186 aa17.17■□□□□ 0.34
NUP88-201ENST00000225696 CDK11AQ9UQ88 783 aaPredicted RBP17.17■□□□□ 0.34
NUP88-201ENST00000225696 ARHGEF11O15085 1522 aa17.16■□□□□ 0.34
NUP88-201ENST00000225696 MPHOSPH9Q99550 1183 aa17.16■□□□□ 0.34
NUP88-201ENST00000225696 EHBP1L1Q8N3D4 1523 aa17.15■□□□□ 0.34
NUP88-201ENST00000225696 PRKRIP1Q9H875 184 aaPredicted RBP17.15■□□□□ 0.34
NUP88-201ENST00000225696 CNTLNQ9NXG0 1405 aa17.15■□□□□ 0.34
NUP88-201ENST00000225696 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.33
NUP88-201ENST00000225696 NBPF8Q3BBV2 869 aa17.13■□□□□ 0.33
NUP88-201ENST00000225696 GAPVD1Q14C86 1478 aa17.13■□□□□ 0.33
NUP88-201ENST00000225696 B4GALNT3Q6L9W6 998 aa17.12■□□□□ 0.33
NUP88-201ENST00000225696 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
NUP88-201ENST00000225696 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
NUP88-201ENST00000225696 CCDC7Q96M83 1385 aa17.11■□□□□ 0.33
NUP88-201ENST00000225696 TCOF1Q13428 1488 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms