RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
NUP88-201ENST00000225696 SHROOM4Q9ULL8 1493 aa21.67■■□□□ 1.06
NUP88-201ENST00000225696 SUPT5HO00267 1087 aaKnown RBP21.38■■□□□ 1.01
NUP88-201ENST00000225696 CCDC180Q9P1Z9 1646 aa21.26■□□□□ 0.99
NUP88-201ENST00000225696 ZCCHC6Q5VYS8 1495 aaKnown RBP21.05■□□□□ 0.96
NUP88-201ENST00000225696 MYO15BQ96JP2 1530 aa20.96■□□□□ 0.95
NUP88-201ENST00000225696 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
NUP88-201ENST00000225696 HRCP23327 699 aa20.77■□□□□ 0.92
NUP88-201ENST00000225696 DCAF8L2P0C7V8 631 aa20.74■□□□□ 0.91
NUP88-201ENST00000225696 PCGF6Q9BYE7 350 aa20.63■□□□□ 0.89
NUP88-201ENST00000225696 PPARGC1BQ86YN6 1023 aaKnown RBP20.49■□□□□ 0.87
NUP88-201ENST00000225696 LOC105371045A0A1W2PR82 267 aa20.41■□□□□ 0.86
NUP88-201ENST00000225696 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
NUP88-201ENST00000225696 TRIM26Q12899 539 aaPredicted RBP20.02■□□□□ 0.8
NUP88-201ENST00000225696 ABCC9O60706 1549 aa19.95■□□□□ 0.78
NUP88-201ENST00000225696 RSF1Q96T23 1441 aaPredicted RBP19.85■□□□□ 0.77
NUP88-201ENST00000225696 NACADO15069 1562 aa19.82■□□□□ 0.76
NUP88-201ENST00000225696 FAM9AQ8IZU1 332 aaPredicted RBP19.79■□□□□ 0.76
NUP88-201ENST00000225696 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
NUP88-201ENST00000225696 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
NUP88-201ENST00000225696 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
NUP88-201ENST00000225696 RB1CC1Q8TDY2 1594 aa19.71■□□□□ 0.75
NUP88-201ENST00000225696 ZEB1P37275 1124 aaPredicted RBP19.6■□□□□ 0.73
NUP88-201ENST00000225696 CECR2Q9BXF3 1484 aa19.49■□□□□ 0.71
NUP88-201ENST00000225696 SCAF1Q9H7N4 1312 aaKnown RBP19.44■□□□□ 0.7
NUP88-201ENST00000225696 MROH2BQ7Z745 1585 aa19.41■□□□□ 0.7
NUP88-201ENST00000225696 WIZO95785 1651 aa19.32■□□□□ 0.68
NUP88-201ENST00000225696 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.31■□□□□ 0.68
NUP88-201ENST00000225696 CCER1Q8TC90 406 aaPredicted RBP19.17■□□□□ 0.66
NUP88-201ENST00000225696 TTBK1Q5TCY1 1321 aaPredicted RBP19.15■□□□□ 0.66
NUP88-201ENST00000225696 EIF4G1Q04637 1599 aaKnown RBP19.13■□□□□ 0.65
NUP88-201ENST00000225696 PELP1Q8IZL8 1130 aaKnown RBP19.11■□□□□ 0.65
NUP88-201ENST00000225696 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
NUP88-201ENST00000225696 UNC13AQ9UPW8 1703 aa19.09■□□□□ 0.65
NUP88-201ENST00000225696 NEUROD1Q13562 356 aa19.08■□□□□ 0.65
NUP88-201ENST00000225696 ABCC8Q09428 1581 aa19.06■□□□□ 0.64
NUP88-201ENST00000225696 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
NUP88-201ENST00000225696 ACIN1Q9UKV3 1341 aaKnown RBP19.04■□□□□ 0.64
NUP88-201ENST00000225696 DIEXFQ68CQ4 756 aaKnown RBP18.99■□□□□ 0.63
NUP88-201ENST00000225696 SOGA1O94964 1423 aa18.96■□□□□ 0.63
NUP88-201ENST00000225696 CEP162Q5TB80 1403 aa18.96■□□□□ 0.63
NUP88-201ENST00000225696 BICRAQ9NZM4 1560 aa18.94■□□□□ 0.62
NUP88-201ENST00000225696 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.62
NUP88-201ENST00000225696 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
NUP88-201ENST00000225696 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.62
NUP88-201ENST00000225696 GTF3C3Q9Y5Q9 886 aa18.89■□□□□ 0.62
NUP88-201ENST00000225696 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
NUP88-201ENST00000225696 TNIKQ9UKE5 1360 aa18.83■□□□□ 0.61
NUP88-201ENST00000225696 SMARCA4P51532 1647 aa18.83■□□□□ 0.6
NUP88-201ENST00000225696 UBTFP17480 764 aaKnown RBP18.81■□□□□ 0.6
NUP88-201ENST00000225696 CSRNP3Q8WYN3 585 aa18.81■□□□□ 0.6
NUP88-201ENST00000225696 CENPBP07199 599 aaPredicted RBP18.76■□□□□ 0.59
NUP88-201ENST00000225696 PABPN1Q86U42 306 aaKnown RBP eCLIP18.73■□□□□ 0.59
NUP88-201ENST00000225696 ZNF316A6NFI3 1004 aaPredicted RBP18.72■□□□□ 0.59
NUP88-201ENST00000225696 HNRNPUL2Q1KMD3 747 aaKnown RBP18.66■□□□□ 0.58
NUP88-201ENST00000225696 YTHDC1Q96MU7 727 aaKnown RBP18.66■□□□□ 0.58
NUP88-201ENST00000225696 EEA1Q15075 1411 aa18.66■□□□□ 0.58
NUP88-201ENST00000225696 GOLGA3Q08378 1498 aa18.65■□□□□ 0.58
NUP88-201ENST00000225696 MIER1Q8N108 512 aa18.61■□□□□ 0.57
NUP88-201ENST00000225696 SYNJ1O43426 1573 aa18.54■□□□□ 0.56
NUP88-201ENST00000225696 RANGAP1P46060 587 aaPredicted RBP18.52■□□□□ 0.56
NUP88-201ENST00000225696 CLIP1P30622 1438 aa18.51■□□□□ 0.55
NUP88-201ENST00000225696 CEP164Q9UPV0 1460 aa18.5■□□□□ 0.55
NUP88-201ENST00000225696 PEG3Q9GZU2 1588 aa18.49■□□□□ 0.55
NUP88-201ENST00000225696 KIF21BO75037 1637 aa18.45■□□□□ 0.54
NUP88-201ENST00000225696 RAPGEF2Q9Y4G8 1499 aa18.44■□□□□ 0.54
NUP88-201ENST00000225696 VPS8Q8N3P4 1428 aa18.44■□□□□ 0.54
NUP88-201ENST00000225696 APLP2Q06481 763 aa18.35■□□□□ 0.53
NUP88-201ENST00000225696 ATAD2BQ9ULI0 1458 aa18.34■□□□□ 0.53
NUP88-201ENST00000225696 BAZ1BQ9UIG0 1483 aaKnown RBP18.32■□□□□ 0.52
NUP88-201ENST00000225696 KANK4Q5T7N3 995 aaPredicted RBP18.27■□□□□ 0.51
NUP88-201ENST00000225696 DHX57Q6P158 1386 aaKnown RBP18.26■□□□□ 0.51
NUP88-201ENST00000225696 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
NUP88-201ENST00000225696 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
NUP88-201ENST00000225696 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
NUP88-201ENST00000225696 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
NUP88-201ENST00000225696 PRXQ9BXM0 1461 aa18.15■□□□□ 0.5
NUP88-201ENST00000225696 MYT1Q01538 1121 aa18.13■□□□□ 0.49
NUP88-201ENST00000225696 CLSPNQ9HAW4 1339 aa18.12■□□□□ 0.49
NUP88-201ENST00000225696 CC2D2AQ9P2K1 1620 aa18.11■□□□□ 0.49
NUP88-201ENST00000225696 SUPT16HQ9Y5B9 1047 aaKnown RBP18.1■□□□□ 0.49
NUP88-201ENST00000225696 BIVM-ERCC5R4GMW8 1640 aa18.08■□□□□ 0.48
NUP88-201ENST00000225696 ERICH3Q5RHP9 1530 aa18.08■□□□□ 0.48
NUP88-201ENST00000225696 ITGAEP38570 1179 aa18.07■□□□□ 0.48
NUP88-201ENST00000225696 RRBP1Q9P2E9 1410 aaKnown RBP18.06■□□□□ 0.48
NUP88-201ENST00000225696 KCNH8Q96L42 1107 aa18.04■□□□□ 0.48
NUP88-201ENST00000225696 CUX1P39880 1505 aa18.02■□□□□ 0.48
NUP88-201ENST00000225696 CCNB3Q8WWL7 1395 aa17.99■□□□□ 0.47
NUP88-201ENST00000225696 ARHGAP35Q9NRY4 1499 aa17.98■□□□□ 0.47
NUP88-201ENST00000225696 CUX2O14529 1486 aa17.97■□□□□ 0.47
NUP88-201ENST00000225696 KIF27Q86VH2 1401 aa17.95■□□□□ 0.46
NUP88-201ENST00000225696 RAB3GAP2Q9H2M9 1393 aa17.93■□□□□ 0.46
NUP88-201ENST00000225696 MAPKBP1O60336 1514 aa17.91■□□□□ 0.46
NUP88-201ENST00000225696 TSHZ2Q9NRE2 1034 aa17.9■□□□□ 0.46
NUP88-201ENST00000225696 SIN3AQ96ST3 1273 aa17.86■□□□□ 0.45
NUP88-201ENST00000225696 DDX10Q13206 875 aaKnown RBP17.82■□□□□ 0.44
NUP88-201ENST00000225696 IGF1RP08069 1367 aa17.82■□□□□ 0.44
NUP88-201ENST00000225696 CFTRP13569 1480 aa17.81■□□□□ 0.44
NUP88-201ENST00000225696 BCANQ96GW7 911 aa17.81■□□□□ 0.44
NUP88-201ENST00000225696 PHLDB1Q86UU1 1377 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 202.9 ms