RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C NOP12Q08208 459 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C YPL277CQ08989 487 aa5.05□□□□□ -1.6
EAR1YMR171C PGA3Q12746 312 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C YLR149CQ99296 730 aa5.05□□□□□ -1.6
EAR1YMR171C MRC1P25588 1096 aa5.05□□□□□ -1.6
EAR1YMR171C PRP19P32523 503 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C TOM20P35180 183 aa5.05□□□□□ -1.6
EAR1YMR171C YKL133CP36066 463 aa5.05□□□□□ -1.6
EAR1YMR171C CKB2P38930 258 aa5.05□□□□□ -1.6
EAR1YMR171C NOC2P39744 710 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C GPP1P41277 250 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C BNA2P47125 453 aa5.05□□□□□ -1.6
EAR1YMR171C IMH1Q06704 911 aaKnown RBP5.05□□□□□ -1.6
EAR1YMR171C PET111P08468 800 aa5.04□□□□□ -1.6
EAR1YMR171C GSY2P27472 705 aa5.04□□□□□ -1.6
EAR1YMR171C SKI2P35207 1287 aaKnown RBP RIP-Chip data5.04□□□□□ -1.6not detected
EAR1YMR171C FLR1P38124 548 aa5.04□□□□□ -1.6
EAR1YMR171C HFD1Q04458 532 aa5.04□□□□□ -1.6
EAR1YMR171C RPN7Q06103 429 aaKnown RBP5.04□□□□□ -1.6
EAR1YMR171C YCG1Q06680 1035 aa5.04□□□□□ -1.6
EAR1YMR171C RRI2Q12348 645 aa5.04□□□□□ -1.6
EAR1YMR171C ENT1Q12518 454 aa5.04□□□□□ -1.6
EAR1YMR171C SAC3P46674 1301 aa5.03□□□□□ -1.6
EAR1YMR171C SOD2P00447 233 aa5.03□□□□□ -1.6
EAR1YMR171C SEC18P18759 758 aaKnown RBP5.03□□□□□ -1.6
EAR1YMR171C WAR1Q03631 944 aa5.03□□□□□ -1.6
EAR1YMR171C YLR224WQ05947 369 aa5.03□□□□□ -1.6
EAR1YMR171C YLR407WQ06070 228 aa5.03□□□□□ -1.6
EAR1YMR171C COG4Q06096 861 aa5.03□□□□□ -1.6
EAR1YMR171C NPC2Q12408 173 aa5.03□□□□□ -1.6
EAR1YMR171C TMA17Q12513 150 aa5.03□□□□□ -1.6
EAR1YMR171C HSP82P02829 709 aaKnown RBP5.02□□□□□ -1.61
EAR1YMR171C RPL22AP05749 121 aaKnown RBP5.02□□□□□ -1.61
EAR1YMR171C PIF1P07271 859 aa5.02□□□□□ -1.61
EAR1YMR171C SAK1P38990 1142 aa5.02□□□□□ -1.61
EAR1YMR171C PLB1P39105 664 aa5.02□□□□□ -1.61
EAR1YMR171C RAD26P40352 1085 aa5.02□□□□□ -1.61
EAR1YMR171C RIM8P53179 542 aa5.02□□□□□ -1.61
EAR1YMR171C FCP1Q03254 732 aa5.02□□□□□ -1.61
EAR1YMR171C KCS1Q12494 1050 aa5.02□□□□□ -1.61
EAR1YMR171C PFK2P16862 959 aaKnown RBP RIP-Chip data5.02□□□□□ -1.61not detected
EAR1YMR171C SEC21P32074 935 aaKnown RBP5.02□□□□□ -1.61
EAR1YMR171C YKR018CP36114 725 aa5.02□□□□□ -1.61
EAR1YMR171C MSS4P38994 779 aa5.02□□□□□ -1.61
EAR1YMR171C YMR147WP40218 223 aaKnown RBP5.02□□□□□ -1.61
EAR1YMR171C PRP31P49704 494 aaPredicted RBP5.02□□□□□ -1.61
EAR1YMR171C VPS75P53853 264 aa5.02□□□□□ -1.61
EAR1YMR171C ASM4Q05166 528 aa5.02□□□□□ -1.61
EAR1YMR171C HCR1Q05775 265 aaKnown RBP5.02□□□□□ -1.61
EAR1YMR171C SPN1Q06505 410 aaPredicted RBP5.02□□□□□ -1.61
EAR1YMR171C TAH18Q12181 623 aa5.02□□□□□ -1.61
EAR1YMR171C GPR1Q12361 961 aa5.02□□□□□ -1.61
EAR1YMR171C TUB3P09734 445 aaKnown RBP5.01□□□□□ -1.61
EAR1YMR171C PET123P17558 318 aa5.01□□□□□ -1.61
EAR1YMR171C PRP6P19735 899 aaPredicted RBP5.01□□□□□ -1.61
EAR1YMR171C CBP3P21560 335 aa5.01□□□□□ -1.61
EAR1YMR171C CRG1P38892 291 aaRIP-Chip data5.01□□□□□ -1.61not detected
EAR1YMR171C RRP8P38961 392 aaKnown RBP5.01□□□□□ -1.61
EAR1YMR171C CAJ1P39101 391 aa5.01□□□□□ -1.61
EAR1YMR171C PZF1P39933 429 aa5.01□□□□□ -1.61
EAR1YMR171C EPL1P43572 832 aa5.01□□□□□ -1.61
EAR1YMR171C YJR120WP47157 116 aa5.01□□□□□ -1.61
EAR1YMR171C FOL1P53848 824 aa5.01□□□□□ -1.61
EAR1YMR171C RNT1Q02555 471 aa5.01□□□□□ -1.61
EAR1YMR171C SLU7Q02775 382 aaKnown RBP5.01□□□□□ -1.61
EAR1YMR171C MUS81Q04149 632 aaPredicted RBP5.01□□□□□ -1.61
EAR1YMR171C YTM1Q12024 460 aaPredicted RBP5.01□□□□□ -1.61
EAR1YMR171C LAM4P38800 1345 aa5□□□□□ -1.61
EAR1YMR171C PRP4P20053 465 aaKnown RBP5□□□□□ -1.61
EAR1YMR171C CLB1P24868 471 aa5□□□□□ -1.61
EAR1YMR171C RNQ1P25367 405 aa5□□□□□ -1.61
EAR1YMR171C CDC15P27636 974 aa5□□□□□ -1.61
EAR1YMR171C DEP1P31385 405 aa5□□□□□ -1.61
EAR1YMR171C TOD6P34219 525 aa5□□□□□ -1.61
EAR1YMR171C OAF1P39720 1047 aaPredicted RBP5□□□□□ -1.61
EAR1YMR171C NIT1P40447 199 aa5□□□□□ -1.61
EAR1YMR171C VHR1P40522 640 aa5□□□□□ -1.61
EAR1YMR171C PFA3P42836 336 aa5□□□□□ -1.61
EAR1YMR171C GZF3P42944 551 aaKnown RBP5□□□□□ -1.61
EAR1YMR171C RET2P43621 546 aa5□□□□□ -1.61
EAR1YMR171C MTR3P48240 250 aaPredicted RBP5□□□□□ -1.61
EAR1YMR171C ASI2P53895 289 aa5□□□□□ -1.61
EAR1YMR171C UBP16Q02863 499 aa5□□□□□ -1.61
EAR1YMR171C GFD1Q04839 188 aaKnown RBP5□□□□□ -1.61
EAR1YMR171C RGA2Q06407 1009 aa5□□□□□ -1.61
EAR1YMR171C HCA4P20448 770 aaKnown RBP4.99□□□□□ -1.61
EAR1YMR171C EUG1P32474 517 aa4.99□□□□□ -1.61
EAR1YMR171C SAC6P32599 642 aaKnown RBP4.99□□□□□ -1.61
EAR1YMR171C SER1P33330 395 aaKnown RBP4.99□□□□□ -1.61
EAR1YMR171C TDA3P38758 523 aa4.99□□□□□ -1.61
EAR1YMR171C YGR153WP48238 217 aa4.99□□□□□ -1.61
EAR1YMR171C APT1P49435 187 aaKnown RBP4.99□□□□□ -1.61
EAR1YMR171C PCL10P53124 433 aa4.99□□□□□ -1.61
EAR1YMR171C YGL082WP53155 381 aa4.99□□□□□ -1.61
EAR1YMR171C ARP4P80428 489 aa4.99□□□□□ -1.61
EAR1YMR171C SWM1Q12379 170 aa4.99□□□□□ -1.61
EAR1YMR171C POM152P39685 1337 aa4.99□□□□□ -1.61
EAR1YMR171C LST4P34239 828 aa4.99□□□□□ -1.61
EAR1YMR171C RRP1P35178 278 aaPredicted RBP4.99□□□□□ -1.61
EAR1YMR171C ADE17P38009 592 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms