RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	YRF1-4	O13559	1382 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	YML133C	Q03099	1374 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	YLL067C	Q07888	1374 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	YLL066C	Q99208	1374 aa		4.85	□□□□□ -1.63
HSP42	YDR171W	NUP192	P47054	1683 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	VMR1	P38735	1592 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	PDR11	P40550	1411 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	RPS21A	P0C0V8	87 aa	Known RBP	4.84	□□□□□ -1.63
HSP42	YDR171W	SEC65	P29478	273 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	MVD1	P32377	396 aa	Known RBP	4.84	□□□□□ -1.63
HSP42	YDR171W	DAL3	P32459	195 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	BEM4	P39011	633 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	BAP3	P41815	604 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	MNN11	P46985	422 aa	Known RBP	4.84	□□□□□ -1.63
HSP42	YDR171W	YJR120W	P47157	116 aa		4.84	□□□□□ -1.63
HSP42	YDR171W	IML1	P47170	1584 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	SPE2	P21182	396 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	YKU70	P32807	602 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	CHS7	P38843	316 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	CCT3	P39077	534 aa	Known RBP	4.83	□□□□□ -1.64
HSP42	YDR171W	NOP9	P47077	666 aa	Known RBP	4.83	□□□□□ -1.64
HSP42	YDR171W	SLI1	P53304	468 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	MUK1	Q02866	612 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	YMR210W	Q03649	449 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	GSF2	Q04697	403 aa	Known RBP	4.83	□□□□□ -1.64
HSP42	YDR171W	VPS36	Q06696	566 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	VHS3	Q08438	674 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	DNF3	Q12674	1656 aa		4.83	□□□□□ -1.64
HSP42	YDR171W	SWI6	P09959	803 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	SSB1	P11484	613 aa	Known RBP	4.82	□□□□□ -1.64
HSP42	YDR171W	EUG1	P32474	517 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	OAF3	P36023	863 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	FAT1	P38225	669 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	NUP60	P39705	539 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	SSB2	P40150	613 aa	Known RBP	4.82	□□□□□ -1.64
HSP42	YDR171W	MPP10	P47083	593 aa	Known RBP	4.82	□□□□□ -1.64
HSP42	YDR171W	UBC11	P52492	156 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	RCR2	Q03446	210 aa	Known RBP	4.82	□□□□□ -1.64
HSP42	YDR171W	YPS7	Q06325	596 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	PNS1	Q12412	539 aa		4.82	□□□□□ -1.64
HSP42	YDR171W	NUP188	P52593	1655 aa	Known RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	GLN4	P13188	809 aa	Known RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	HIR1	P32479	840 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	DID4	P36108	232 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	SFB3	P38810	929 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	RIX1	P38883	763 aa	Predicted RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
HSP42	YDR171W	RSC8	P43609	557 aa	Known RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	PAN2	P53010	1115 aa	Predicted RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	PIL1	P53252	339 aa	Known RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	NOP15	P53927	220 aa	Predicted RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	PTA1	Q01329	785 aa	Predicted RBP	4.81	□□□□□ -1.64
HSP42	YDR171W	HFI1	Q12060	488 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	YRF1-1	P0CX20	1796 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	YRF1-5	P0CX21	1796 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	YRF1-8	P0CX22	1796 aa		4.81	□□□□□ -1.64
HSP42	YDR171W	SIR4	P11978	1358 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	BNR1	P40450	1375 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	FRS1	P15624	595 aa	Known RBP	4.8	□□□□□ -1.64
HSP42	YDR171W	YEF3	P16521	1044 aa	Known RBP	4.8	□□□□□ -1.64
HSP42	YDR171W	REV7	P38927	245 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	FMP52	P40008	231 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	YIL092W	P40497	633 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	ECM16	Q04217	1267 aa	Known RBP	4.8	□□□□□ -1.64
HSP42	YDR171W	TRE2	Q08693	809 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	MET5	P47169	1442 aa		4.8	□□□□□ -1.64
HSP42	YDR171W	KRE5	P22023	1365 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	RPS17A	P02407	136 aa	Known RBP	4.79	□□□□□ -1.64
HSP42	YDR171W	ERG20	P08524	352 aa	Known RBP	4.79	□□□□□ -1.64
HSP42	YDR171W	RPS17B	P14127	136 aa	Known RBP	4.79	□□□□□ -1.64
HSP42	YDR171W	PET127	P32606	800 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	PCL5	P38794	229 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	DUN1	P39009	513 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	STB4	P50104	949 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	FOL1	P53848	824 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	OMS1	Q06668	471 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	RMP1	Q12530	201 aa		4.79	□□□□□ -1.64
HSP42	YDR171W	USO1	P25386	1790 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	PEX1	P24004	1043 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	SER1	P33330	395 aa	Known RBP	4.78	□□□□□ -1.64
HSP42	YDR171W	YBR071W	P38243	211 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	TCD1	P38756	429 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	RTR1	P40084	226 aa	Predicted RBP	4.78	□□□□□ -1.64
HSP42	YDR171W	TPM2	P40414	161 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	DAS1	P47005	663 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	SMC3	P47037	1230 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	TEL2	P53038	688 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	CTF4	Q01454	927 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	VBA4	Q04602	768 aa	Known RBP	4.78	□□□□□ -1.64
HSP42	YDR171W	THI22	Q06490	572 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	DIA2	Q08496	732 aa	Predicted RBP	4.78	□□□□□ -1.64
HSP42	YDR171W	YPR027C	Q12079	277 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	YKL033W-A	Q86ZR7	236 aa		4.78	□□□□□ -1.64
HSP42	YDR171W	RPS9B	P05755	195 aa	Known RBP	4.77	□□□□□ -1.65
HSP42	YDR171W	DAL5	P15365	543 aa		4.77	□□□□□ -1.65
HSP42	YDR171W	IME1	P21190	360 aa		4.77	□□□□□ -1.65
HSP42	YDR171W	PHO11	P35842	467 aa		4.77	□□□□□ -1.65
HSP42	YDR171W	PHO12	P38693	467 aa		4.77	□□□□□ -1.65
HSP42	YDR171W	YHL017W	P38745	532 aa		4.77	□□□□□ -1.65
HSP42	YDR171W	GPP2	P40106	250 aa	Known RBP	4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 37.2 ms