RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W LSB3P43603 459 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W ADY4Q05955 493 aa1.37□□□□□ -2.19
CDC39YCR093W HER1Q12276 1246 aa1.37□□□□□ -2.19
CDC39YCR093W LEU2P04173 364 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W ACO1P19414 778 aaKnown RBP RIP-Chip data1.37□□□□□ -2.19not detected
CDC39YCR093W DUR3P33413 735 aa1.37□□□□□ -2.19
CDC39YCR093W TOD6P34219 525 aa1.37□□□□□ -2.19
CDC39YCR093W YBR071WP38243 211 aa1.37□□□□□ -2.19
CDC39YCR093W TAT2P38967 592 aa1.37□□□□□ -2.19
CDC39YCR093W NUP60P39705 539 aa1.37□□□□□ -2.19
CDC39YCR093W FUN12P39730 1002 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W SMK1P41808 388 aa1.37□□□□□ -2.19
CDC39YCR093W YFR016CP43597 1233 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W RMD8P43620 662 aa1.37□□□□□ -2.19
CDC39YCR093W MET13P53128 600 aa1.37□□□□□ -2.19
CDC39YCR093W HRQ1Q05549 1077 aa1.37□□□□□ -2.19
CDC39YCR093W FRE5Q08908 694 aa1.37□□□□□ -2.19
CDC39YCR093W YOR022CQ12204 715 aa1.37□□□□□ -2.19
CDC39YCR093W BRR1Q99177 341 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W MRP10O75012 95 aa1.37□□□□□ -2.19
CDC39YCR093W PHO5P00635 467 aa1.37□□□□□ -2.19
CDC39YCR093W INH1P01097 85 aa1.37□□□□□ -2.19
CDC39YCR093W ILS1P09436 1072 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W NCP1P16603 691 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W REC107P21651 314 aa1.37□□□□□ -2.19
CDC39YCR093W PMI40P29952 429 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W RPD3P32561 433 aa1.37□□□□□ -2.19
CDC39YCR093W APD1P38281 316 aa1.37□□□□□ -2.19
CDC39YCR093W MRX1P40050 688 aa1.37□□□□□ -2.19
CDC39YCR093W YER175W-AQ8TGU4 54 aa1.37□□□□□ -2.19
CDC39YCR093W RRP1P35178 278 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W YKR051WP36142 418 aa1.37□□□□□ -2.19
CDC39YCR093W PLB1P39105 664 aa1.37□□□□□ -2.19
CDC39YCR093W ARG2P40360 574 aa1.37□□□□□ -2.19
CDC39YCR093W RTA1P53047 317 aa1.37□□□□□ -2.19
CDC39YCR093W AIM14P53109 570 aa1.37□□□□□ -2.19
CDC39YCR093W PEF1P53238 335 aa1.37□□□□□ -2.19
CDC39YCR093W NRD1P53617 575 aaKnown RBP RIP-Chip data1.37□□□□□ -2.19not detected
CDC39YCR093W MAK10Q02197 733 aa1.37□□□□□ -2.19
CDC39YCR093W ATG33Q06485 197 aa1.37□□□□□ -2.19
CDC39YCR093W ISA1Q07821 250 aaPredicted RBP1.37□□□□□ -2.19
CDC39YCR093W BMS1Q08965 1183 aaKnown RBP1.37□□□□□ -2.19
CDC39YCR093W HFI1Q12060 488 aa1.37□□□□□ -2.19
CDC39YCR093W NUR1Q12066 484 aa1.37□□□□□ -2.19
CDC39YCR093W SNF2P22082 1703 aa1.36□□□□□ -2.19
CDC39YCR093W GCD1P09032 578 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W PDE1P22434 369 aa1.36□□□□□ -2.19
CDC39YCR093W VPS34P22543 875 aa1.36□□□□□ -2.19
CDC39YCR093W ILV6P25605 309 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W UBP5P39944 805 aa1.36□□□□□ -2.19
CDC39YCR093W SIP5P40210 489 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W SMC3P47037 1230 aa1.36□□□□□ -2.19
CDC39YCR093W BUD22Q04347 519 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W PIF1P07271 859 aa1.36□□□□□ -2.19
CDC39YCR093W HEM1P09950 548 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W SUI2P20459 304 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W CHS3P29465 1165 aa1.36□□□□□ -2.19
CDC39YCR093W SEC65P29478 273 aa1.36□□□□□ -2.19
CDC39YCR093W PGM1P33401 570 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W SIC1P38634 284 aa1.36□□□□□ -2.19
CDC39YCR093W FSH1P38777 243 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W UTP9P38882 575 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W ARF3P40994 183 aaRIP-Chip data1.36□□□□□ -2.19not detected
CDC39YCR093W IDS2P46958 469 aa1.36□□□□□ -2.19
CDC39YCR093W AVT1P47082 602 aa1.36□□□□□ -2.19
CDC39YCR093W DIP5P53388 608 aa1.36□□□□□ -2.19
CDC39YCR093W ESF2P53743 316 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W ARG5,6Q01217 863 aa1.36□□□□□ -2.19
CDC39YCR093W IWR1Q07532 353 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W MDM20Q12387 796 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W NKP1Q12493 238 aa1.36□□□□□ -2.19
CDC39YCR093W YLR302CO13544 120 aa1.36□□□□□ -2.19
CDC39YCR093W COX11P19516 300 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W ERG4P25340 473 aa1.36□□□□□ -2.19
CDC39YCR093W MRPL9P31334 269 aa1.36□□□□□ -2.19
CDC39YCR093W MSS51P32335 436 aa1.36□□□□□ -2.19
CDC39YCR093W DCG1P32460 244 aa1.36□□□□□ -2.19
CDC39YCR093W TFC4P33339 1025 aa1.36□□□□□ -2.19
CDC39YCR093W YBP1P38315 674 aa1.36□□□□□ -2.19
CDC39YCR093W SLN1P39928 1220 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W CAB2P40506 365 aa1.36□□□□□ -2.19
CDC39YCR093W PFA3P42836 336 aa1.36□□□□□ -2.19
CDC39YCR093W NIT2P47016 307 aa1.36□□□□□ -2.19
CDC39YCR093W ASI2P53895 289 aa1.36□□□□□ -2.19
CDC39YCR093W YNL034WP53963 612 aa1.36□□□□□ -2.19
CDC39YCR093W NGL1Q08213 363 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W ARO1P08566 1588 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W TPK1P06244 397 aa1.36□□□□□ -2.19
CDC39YCR093W RPA135P22138 1203 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W KIN3P22209 435 aa1.36□□□□□ -2.19
CDC39YCR093W PRP45P28004 379 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W SLC1P33333 303 aa1.36□□□□□ -2.19
CDC39YCR093W GLG1P36143 616 aa1.36□□□□□ -2.19
CDC39YCR093W YHL017WP38745 532 aa1.36□□□□□ -2.19
CDC39YCR093W YHR202WP38887 602 aa1.36□□□□□ -2.19
CDC39YCR093W OAF1P39720 1047 aaPredicted RBP1.36□□□□□ -2.19
CDC39YCR093W AFG3P39925 761 aa1.36□□□□□ -2.19
CDC39YCR093W GPP1P41277 250 aaKnown RBP1.36□□□□□ -2.19
CDC39YCR093W YAP6Q03935 383 aa1.36□□□□□ -2.19
CDC39YCR093W SKM1Q12469 655 aa1.36□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms