RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Zbtb38Q3LR78 1197 aa11.69□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ankrd40Q5SUE8 363 aa11.69□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Dclk3Q8BWQ5 790 aa11.69□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Irx4Q9QY61 515 aa11.69□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Adamts13Q769J6 1426 aa11.69□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ets1P27577 440 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ciao1Q99KN2 339 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Stac3Q8BZ71 360 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 LdhaP06151 332 aaKnown RBP11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ftl2P49945 183 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Erich4Q3UNU4 136 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Fam170aQ66LM6 333 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Zscan22Q8BGS5 496 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ppfibp1Q8C8U0 969 aaKnown RBP11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Edc3Q8K2D3 508 aaKnown RBP11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Znf704Q9ERQ3 566 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Hip1rQ9JKY5 1068 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ube3aO08759 870 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Rnf187Q8BFX1 236 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Nop53Q8BK35 484 aaKnown RBP11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Myl6bQ8CI43 207 aa11.68□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Prr16A3KMN5 304 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Kif2aP28740 705 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Terf1P70371 421 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 VmacQ8BP01 174 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Gzf1Q4VBD9 706 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Tex2Q6ZPJ0 1128 aaKnown RBP11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Dhx38Q80X98 1228 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Pde5aQ8CG03 865 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Q9D5Q8 446 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Tagap1P0CAX8 505 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Tlr7P58681 1050 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Fgfr1opQ66JX5 399 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Atad2Q8CDM1 1040 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Pym1Q8CHP5 203 aaKnown RBP11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Zfp51Q3U4L8 781 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Clcn1Q64347 994 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Exoc8Q6PGF7 716 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Usp37Q8C0R0 979 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ccdc7Q9D541 371 aa11.67□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 InsrrQ9WTL4 1300 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 P4ha1Q60715 534 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Lzts2Q91YU6 671 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 CalrP14211 416 aaKnown RBP11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ercc3P49135 783 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Clul1Q3ZRW6 464 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 MycbpapQ5SUV2 932 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Sik1Q60670 779 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Maip1Q8BHE8 291 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Zfp202Q8C879 641 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Atp12aQ9Z1W8 1035 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Iqgap3F8VQ29 1632 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Abcc4E9Q236 1325 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Trap1aP19473 224 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Cdc42bpgQ80UW5 1551 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Col20a1Q923P0 1320 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 TnrQ8BYI9 1358 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 PparaP23204 468 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ctr9Q62018 1173 aaKnown RBP11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Tgfb1i1Q62219 461 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Kdm1aQ6ZQ88 853 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Dis3l2Q8CI75 870 aaKnown RBP11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ddx27Q921N6 760 aaKnown RBP11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Ube3bQ9ES34 1070 aa11.66□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Apol10bG3X9K7 334 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Igbp1Q61249 340 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Krt15Q61414 452 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Q8BZJ8 459 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Tmod2Q9JKK7 351 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Serpinc1P32261 465 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Senp1P59110 640 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Prdm1Q60636 856 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Gbp4Q61107 620 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Fmnl3Q6ZPF4 1028 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Lrrc2Q8VDB8 371 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Themis2Q91YX0 663 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Hdac9Q99N13 588 aa11.65□□□□□ -0.54
Ccdc40-201ENSMUST00000035935 Gm28919A0A087WP35 240 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tbc1d2B1AVH7 922 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm42641I6L9G2 585 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Bbof1Q3V079 533 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Pex1Q5BL07 1284 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 AtripQ8BMG1 785 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Kiaa1524Q8BWY9 907 aa11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ahdc1Q6PAL7 1594 aaKnown RBP11.65□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Myl3P09542 204 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 ParnQ8VDG3 624 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 SfpqQ8VIJ6 699 aaKnown RBP11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm1993A6X8I0 212 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 SlxD3Z347 212 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Csrnp1P59054 583 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Trim52Q8CDV4 233 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Snapc4Q8BP86 1333 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 1700029H14RikE9PY36 240 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Hspd1P63038 573 aaKnown RBP11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Asap2Q7SIG6 958 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cep128Q8BI22 1102 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tns3Q5SSZ5 1440 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Robo2Q7TPD3 1470 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cyp24a1Q64441 514 aa11.64□□□□□ -0.55
Retrieved 100 of 22,080 RNA–protein pairs in 80.9 ms