Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Gm25239-201ENSMUST00000174915 86 ntBASIC49.94■■■■■ 5.59
Clcn1Q64347 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46.35■■■■■ 5.01
Clcn1Q64347 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC45.55■■■■■ 4.88
Clcn1Q64347 Gm24109-201ENSMUST00000175489 103 ntBASIC43.45■■■■■ 4.55
Clcn1Q64347 Gm15042-201ENSMUST00000120212 883 ntBASIC43.26■■■■■ 4.52
Clcn1Q64347 Gm15045-201ENSMUST00000117359 883 ntBASIC42.34■■■■■ 4.37
Clcn1Q64347 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42.15■■■■■ 4.34
Clcn1Q64347 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC42.06■■■■■ 4.32
Clcn1Q64347 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC41.81■■■■■ 4.28
Clcn1Q64347 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41.62■■■■■ 4.25
Clcn1Q64347 Gm23366-201ENSMUST00000175022 89 ntBASIC41.55■■■■■ 4.24
Clcn1Q64347 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41.54■■■■■ 4.24
Clcn1Q64347 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC40.91■■■■■ 4.14
Clcn1Q64347 AC153911.1-202ENSMUST00000218534 1034 ntBASIC40.68■■■■■ 4.1
Clcn1Q64347 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC40.44■■■■■ 4.06
Clcn1Q64347 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.37■■■■■ 4.05
Clcn1Q64347 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC40.16■■■■■ 4.02
Clcn1Q64347 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40.13■■■■■ 4.02
Clcn1Q64347 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC40.06■■■■■ 4
Clcn1Q64347 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC39.99■■■■□ 3.99
Clcn1Q64347 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC39.73■■■■□ 3.95
Clcn1Q64347 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC39.72■■■■□ 3.95
Clcn1Q64347 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39.67■■■■□ 3.94
Clcn1Q64347 Gm25238-201ENSMUST00000174914 89 ntBASIC39.58■■■■□ 3.93
Clcn1Q64347 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
Clcn1Q64347 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
Clcn1Q64347 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC39.51■■■■□ 3.91
Clcn1Q64347 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
Clcn1Q64347 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC39.4■■■■□ 3.9
Clcn1Q64347 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC39.14■■■■□ 3.86
Clcn1Q64347 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC39.14■■■■□ 3.86
Clcn1Q64347 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC39.1■■■■□ 3.85
Clcn1Q64347 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC38.7■■■■□ 3.79
Clcn1Q64347 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC38.56■■■■□ 3.76
Clcn1Q64347 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC38.5■■■■□ 3.75
Clcn1Q64347 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
Clcn1Q64347 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
Clcn1Q64347 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38.28■■■■□ 3.72
Clcn1Q64347 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC38.22■■■■□ 3.71
Clcn1Q64347 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
Clcn1Q64347 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC38.17■■■■□ 3.7
Clcn1Q64347 Psd-208ENSMUST00000224556 2034 ntBASIC38.07■■■■□ 3.69
Clcn1Q64347 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38.06■■■■□ 3.68
Clcn1Q64347 Gm25262-201ENSMUST00000174934 133 ntBASIC37.92■■■■□ 3.66
Clcn1Q64347 Gm27325-201ENSMUST00000175467 74 ntBASIC37.88■■■■□ 3.65
Clcn1Q64347 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC37.84■■■■□ 3.65
Clcn1Q64347 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37.83■■■■□ 3.65
Clcn1Q64347 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
Clcn1Q64347 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37.76■■■■□ 3.64
Clcn1Q64347 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC37.58■■■■□ 3.61
Clcn1Q64347 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
Clcn1Q64347 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37.35■■■■□ 3.57
Clcn1Q64347 Rab21-202ENSMUST00000218831 843 ntBASIC37.34■■■■□ 3.57
Clcn1Q64347 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37.27■■■■□ 3.56
Clcn1Q64347 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC37.26■■■■□ 3.55
Clcn1Q64347 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC37.25■■■■□ 3.55
Clcn1Q64347 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC37.24■■■■□ 3.55
Clcn1Q64347 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC37.17■■■■□ 3.54
Clcn1Q64347 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC37.1■■■■□ 3.53
Clcn1Q64347 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC37.1■■■■□ 3.53
Clcn1Q64347 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
Clcn1Q64347 Gm26115-201ENSMUST00000175605 87 ntBASIC37.09■■■■□ 3.53
Clcn1Q64347 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC37.06■■■■□ 3.52
Clcn1Q64347 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
Clcn1Q64347 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC37.03■■■■□ 3.52
Clcn1Q64347 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
Clcn1Q64347 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
Clcn1Q64347 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC37.02■■■■□ 3.52
Clcn1Q64347 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC37.01■■■■□ 3.51
Clcn1Q64347 Gm8109-201ENSMUST00000194076 746 ntBASIC36.96■■■■□ 3.51
Clcn1Q64347 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC36.87■■■■□ 3.49
Clcn1Q64347 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
Clcn1Q64347 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
Clcn1Q64347 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
Clcn1Q64347 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
Clcn1Q64347 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
Clcn1Q64347 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC36.7■■■■□ 3.47
Clcn1Q64347 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36.68■■■■□ 3.46
Clcn1Q64347 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36.59■■■■□ 3.45
Clcn1Q64347 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC36.58■■■■□ 3.45
Clcn1Q64347 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC36.56■■■■□ 3.44
Clcn1Q64347 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
Clcn1Q64347 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36.5■■■■□ 3.43
Clcn1Q64347 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC36.45■■■■□ 3.43
Clcn1Q64347 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC36.35■■■■□ 3.41
Clcn1Q64347 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC36.3■■■■□ 3.4
Clcn1Q64347 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC36.28■■■■□ 3.4
Clcn1Q64347 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
Clcn1Q64347 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36.25■■■■□ 3.39
Clcn1Q64347 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC36.19■■■■□ 3.38
Clcn1Q64347 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
Clcn1Q64347 Gm17082-201ENSMUST00000166043 1091 ntBASIC36.1■■■■□ 3.37
Clcn1Q64347 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC36.09■■■■□ 3.37
Clcn1Q64347 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36.05■■■■□ 3.36
Clcn1Q64347 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
Clcn1Q64347 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC36.02■■■■□ 3.36
Clcn1Q64347 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC36■■■■□ 3.35
Clcn1Q64347 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
Clcn1Q64347 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
Clcn1Q64347 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms