RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	OSH3	P38713	996 aa	Known RBP	5.11	□□□□□ -1.59
EAR1	YMR171C	YHL017W	P38745	532 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	RPN10	P38886	268 aa	Known RBP	5.11	□□□□□ -1.59
EAR1	YMR171C	SET5	P38890	526 aa	Known RBP	5.11	□□□□□ -1.59
EAR1	YMR171C	MET12	P46151	657 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	AIM14	P53109	570 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	PBP1	P53297	722 aa	Known RBP	5.11	□□□□□ -1.59
EAR1	YMR171C	UME1	Q03010	460 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	NHX1	Q04121	633 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	YDR338C	Q05497	695 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	DUS4	Q06063	367 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	ATG33	Q06485	197 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	SSP2	Q08646	371 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	SFI1	Q12369	946 aa		5.11	□□□□□ -1.59
EAR1	YMR171C	DDP1	Q99321	188 aa	Known RBP	5.11	□□□□□ -1.59
EAR1	YMR171C	SSB1	P11484	613 aa	Known RBP	5.1	□□□□□ -1.59
EAR1	YMR171C	HMG1	P12683	1054 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	SSB2	P40150	613 aa	Known RBP	5.1	□□□□□ -1.59
EAR1	YMR171C	GPG1	P53130	126 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	YBP2	P53169	641 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	DUS1	P53759	423 aa	Known RBP	5.1	□□□□□ -1.59
EAR1	YMR171C	PKH1	Q03407	766 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	GUP2	Q08929	609 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	THI21	Q08975	551 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	HMI1	Q12039	706 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	YPL150W	Q12152	901 aa		5.1	□□□□□ -1.59
EAR1	YMR171C	OSM1	P21375	501 aa	Known RBP	5.09	□□□□□ -1.59
EAR1	YMR171C	LTV1	P34078	463 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	SEG2	P34250	1132 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	GCN5	Q03330	439 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	CRR1	Q05790	422 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	GPB1	Q08886	897 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	GIN4	Q12263	1142 aa		5.09	□□□□□ -1.59
EAR1	YMR171C	HIS5	P07172	385 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	RDS1	P25611	832 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	TSA1	P34760	196 aa	Known RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	VID28	P40547	921 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	URM1	P40554	99 aa	Predicted RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	TFG2	P41896	400 aa	Predicted RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	VPS62	P53285	467 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	ADE16	P54113	591 aa	Known RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	SSL2	Q00578	843 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	YDR132C	Q03900	495 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	GUD1	Q07729	489 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	UPC2	Q12151	913 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	MATALPHA2	P0CY08	210 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	HMLALPHA2	P0CY09	210 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	EMC1	P25574	760 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	SPC110	P32380	944 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	CTF8	P38877	133 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	SDP1	P40479	209 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	UBC9	P50623	157 aa	Predicted RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	YAP6	Q03935	383 aa		5.08	□□□□□ -1.6
EAR1	YMR171C	SSK22	P25390	1331 aa	Predicted RBP	5.08	□□□□□ -1.6
EAR1	YMR171C	OPI1	P21957	404 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	MBR1	P23493	339 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	PEP3	P27801	918 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	STE14	P32584	239 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	YKT6	P36015	200 aa	Known RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	KTR3	P38130	404 aa	Predicted RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	MAL33	P38157	468 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	HSL7	P38274	827 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	YER130C	P39959	443 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	DOT6	P40059	670 aa	Known RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	YJR096W	P47137	282 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	ENP2	P48234	707 aa	Known RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	ZIP2	P53061	704 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	VPS60	Q03390	229 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	MTQ2	Q03920	221 aa	Predicted RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	RXT3	Q07458	294 aa		5.07	□□□□□ -1.6
EAR1	YMR171C	SNU66	Q12420	587 aa	Predicted RBP	5.07	□□□□□ -1.6
EAR1	YMR171C	RPP2A	P05319	106 aa	Known RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	RPS13	P05756	151 aa	Known RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	GPA1	P08539	472 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	GAS1	P22146	559 aa	Known RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	APL2	P36000	726 aa	Predicted RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	CHA4	P43634	648 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	YPT11	P48559	417 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	NPY1	P53164	384 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	CDA2	Q06703	312 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	ACK1	Q07622	623 aa	Predicted RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	FAP7	Q12055	197 aa	Predicted RBP	5.06	□□□□□ -1.6
EAR1	YMR171C	Q0142	Q9ZZW4	58 aa		5.06	□□□□□ -1.6
EAR1	YMR171C	PGI1	P12709	554 aa	Known RBP	5.05	□□□□□ -1.6
EAR1	YMR171C	SED4	P25365	1065 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	CDC20	P26309	610 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	CCR4	P31384	837 aa	Known RBP	5.05	□□□□□ -1.6
EAR1	YMR171C	IMP2'	P32351	346 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	YKR051W	P36142	418 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	RFT1	P38206	574 aa	Predicted RBP	5.05	□□□□□ -1.6
EAR1	YMR171C	AIM3	P38266	947 aa	Known RBP	5.05	□□□□□ -1.6
EAR1	YMR171C	YHR078W	P38799	552 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	CIN4	P39110	191 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	YFL052W	P43551	465 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	SSY5	P47002	699 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	SMC3	P47037	1230 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	SPT20	P50875	604 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	NCS6	P53088	359 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	PIB2	P53191	635 aa		5.05	□□□□□ -1.6
EAR1	YMR171C	VMS1	Q04311	632 aa	Known RBP	5.05	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 45.9 ms