RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	UBC9	P50623	157 aa	Predicted RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	ECM9	Q02202	377 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	RNT1	Q02555	471 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	SKY1	Q03656	742 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	SML1	Q04964	104 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	ETT1	Q08421	412 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	YOL087C	Q99247	1116 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	SPC110	P32380	944 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	AAP1	P37898	856 aa	Known RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	UGA2	P38067	497 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	MNT3	P40549	630 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	DSN1	P40568	576 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	PRP31	P49704	494 aa	Predicted RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	RIA1	P53893	1110 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	PTA1	Q01329	785 aa	Predicted RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	VPS30	Q02948	557 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	SSY1	Q03770	852 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	TPP1	Q03796	238 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	YMR018W	Q04364	514 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	YPR196W	Q06595	470 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	PEX15	Q08215	383 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	NBA1	Q08229	501 aa	Known RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	PUS7	Q08647	676 aa	Known RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	RIM20	Q12033	661 aa		4.73	□□□□□ -1.65
PRE9	YGR135W	DDP1	Q99321	188 aa	Known RBP	4.73	□□□□□ -1.65
PRE9	YGR135W	APC1	P53886	1748 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	RNQ1	P25367	405 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	CHS3	P29465	1165 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	YKL151C	P36059	337 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	HSL7	P38274	827 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	NMD3	P38861	518 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	VPS41	P38959	992 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	PEX7	P39108	375 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	RPS0B	P46654	252 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	ENV11	P53246	860 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	ECM38	Q05902	660 aa	Predicted RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	SGD1	Q06132	899 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	YLR257W	Q06146	321 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	SSP2	Q08646	371 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	HRK1	Q08732	759 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	NEW1	Q08972	1196 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	YKL068W-A	Q3E826	78 aa		4.72	□□□□□ -1.65
PRE9	YGR135W	ADE6	P38972	1358 aa	Known RBP	4.72	□□□□□ -1.65
PRE9	YGR135W	CPA2	P03965	1118 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	RPS21A	P0C0V8	87 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	DAL7	P21826	554 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	GAS1	P22146	559 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	RFA1	P22336	621 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	CDC48	P25694	835 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	CCR4	P31384	837 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	MCM10	P32354	571 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	SLA2	P33338	968 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	TSL1	P38427	1098 aa	Known RBP	4.71	□□□□□ -1.66
PRE9	YGR135W	RTT107	P38850	1070 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	UBP5	P39944	805 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	YER158C	P40095	573 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	NDE1	P40215	560 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	TMA108	P40462	946 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	SHR5	P41912	237 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	ERR3	P42222	437 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	QRI7	P43122	407 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	BFA1	P47113	574 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	CTF18	P49956	741 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	TAD1	P53065	400 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	YMR102C	Q03177	834 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	TLG2	Q08144	397 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	YPL150W	Q12152	901 aa		4.71	□□□□□ -1.66
PRE9	YGR135W	DIF1	O13577	133 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	GPA1	P08539	472 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	MSS18	P08593	268 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	MRP7	P12687	371 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	HSC82	P15108	705 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	SEC18	P18759	758 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	RDS1	P25611	832 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	SWC3	P31376	625 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	BEM3	P32873	1128 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	SAP190	P36123	1033 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	YKR078W	P36158	585 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	ECM21	P38167	1117 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	SIC1	P38634	284 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	HOS4	P40480	1083 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	BNA2	P47125	453 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	RNR4	P49723	345 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	NPY1	P53164	384 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	GTR1	Q00582	310 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	CRR1	Q05790	422 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	TSR2	Q06672	205 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	CTI6	Q08923	506 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	YOL114C	Q12322	202 aa		4.7	□□□□□ -1.66
PRE9	YGR135W	LPX1	Q12405	387 aa	Known RBP	4.7	□□□□□ -1.66
PRE9	YGR135W	USO1	P25386	1790 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	FOB1	O13329	566 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	STE11	P23561	717 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	SER1	P33330	395 aa	Known RBP	4.69	□□□□□ -1.66
PRE9	YGR135W	PTC7	P38797	343 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	RPN3	P40016	523 aa	Known RBP	4.69	□□□□□ -1.66
PRE9	YGR135W	RLP7	P40693	322 aa	Known RBP	4.69	□□□□□ -1.66
PRE9	YGR135W	YFL054C	P43549	646 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	YFL052W	P43551	465 aa		4.69	□□□□□ -1.66
PRE9	YGR135W	YJL045W	P47052	634 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms