RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	SEC18	P18759	758 aa	Known RBP	4.42	□□□□□ -1.7
UBP6	YFR010W	LCB1	P25045	558 aa	Known RBP	4.42	□□□□□ -1.7
UBP6	YFR010W	YEL1	P34225	687 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	RER2	P35196	286 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.42	□□□□□ -1.7	not detected
UBP6	YFR010W	YBL028C	P38202	106 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	BIT2	P38346	545 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	YHL012W	P38709	493 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	CKB2	P38930	258 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	YJL068C	P40363	299 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	IMA5	P40884	581 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	GZF3	P42944	551 aa	Known RBP	4.42	□□□□□ -1.7
UBP6	YFR010W	CCM1	P48237	864 aa	Predicted RBP	4.42	□□□□□ -1.7
UBP6	YFR010W	GYP7	P48365	746 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	NUP84	P52891	726 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	PEX25	Q02969	394 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	RRN5	Q02983	363 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	YLR225C	Q05948	407 aa	Known RBP	4.42	□□□□□ -1.7
UBP6	YFR010W	PHO92	Q06390	306 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	YOL114C	Q12322	202 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	BI4	P03879	638 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	HSF1	P10961	833 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	INO1	P11986	533 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	RAD53	P22216	821 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	MNE1	P24720	663 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	NTG1	P31378	399 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	COY1	P34237	679 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	UIP5	P36137	443 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	YEL068C	P39977	110 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	EMP65	P40085	556 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	DPH1	P40487	425 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	SEC28	P40509	296 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	GTS1	P40956	396 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	AIP1	P46680	615 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	ECL1	P48235	211 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	ZIP2	P53061	704 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	HOP2	P53187	214 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	ORC3	P54790	616 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	REX2	P54964	269 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	YDR131C	Q03899	556 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	DPB4	Q04603	196 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	YCG1	Q06680	1035 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	CSR1	Q06705	408 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	PAR32	Q12515	295 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	CDC9	P04819	755 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	RAD18	P10862	487 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	HOM2	P13663	365 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	OM45	P16547	393 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	COX11	P19516	300 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	SFL1	P20134	766 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	PRP28	P23394	588 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	ERG3	P32353	365 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	PUP2	P32379	260 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	NIP1	P32497	812 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	MRE11	P32829	692 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	DOM34	P33309	386 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	YKL107W	P34251	309 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	KHA1	P40309	873 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	CCT7	P42943	550 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	MNN11	P46985	422 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	AIM14	P53109	570 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	YNL247W	P53852	767 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	CNM67	P53865	581 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	SSL2	Q00578	843 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	CEG1	Q01159	459 aa	Predicted RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	YPL071C	Q02864	156 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	SNZ1	Q03148	297 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	YMR155W	Q03795	547 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	HIM1	Q06674	414 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	PEX15	Q08215	383 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	VHS3	Q08438	674 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	KEL3	Q08979	651 aa	Predicted RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	SFI1	Q12369	946 aa		4.41	□□□□□ -1.7
UBP6	YFR010W	RVB2	Q12464	471 aa	Known RBP	4.41	□□□□□ -1.7
UBP6	YFR010W	YER152C	P10356	443 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	CKA1	P15790	372 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	THR1	P17423	357 aa	Known RBP	4.4	□□□□□ -1.71
UBP6	YFR010W	RNQ1	P25367	405 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	HBS1	P32769	611 aa	Known RBP	4.4	□□□□□ -1.71
UBP6	YFR010W	YKU70	P32807	602 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	TEF4	P36008	412 aa	Known RBP	4.4	□□□□□ -1.71
UBP6	YFR010W	MCD4	P36051	919 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	ALG3	P38179	458 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	VPS45	P38932	577 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	SAH1	P39954	449 aa	Known RBP	4.4	□□□□□ -1.71
UBP6	YFR010W	BUD16	P39988	312 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	YIL161W	P40449	235 aa	Known RBP	4.4	□□□□□ -1.71
UBP6	YFR010W	SLD3	P53135	668 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	CIK1	Q01649	594 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	ROD1	Q02805	837 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	MFB1	Q04922	465 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	YLR345W	Q06137	509 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	MDM36	Q06820	579 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	PTC5	Q12511	572 aa		4.4	□□□□□ -1.71
UBP6	YFR010W	MIS1	P09440	975 aa	Known RBP	4.39	□□□□□ -1.71
UBP6	YFR010W	MIH1	P23748	554 aa		4.39	□□□□□ -1.71
UBP6	YFR010W	SED4	P25365	1065 aa		4.39	□□□□□ -1.71
UBP6	YFR010W	MSH1	P25846	959 aa		4.39	□□□□□ -1.71
UBP6	YFR010W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.39	□□□□□ -1.71	not detected
UBP6	YFR010W	SSE1	P32589	693 aa	Known RBP	4.39	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 36.9 ms