RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	PMA1	P05030	918 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	CTT1	P06115	562 aa		2.56	□□□□□ -2
CLN3	YAL040C	RPL11A	P0C0W9	174 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	TPM1	P17536	199 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	HSP60	P19882	572 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	RIT1	P23796	513 aa		2.56	□□□□□ -2
CLN3	YAL040C	SFP1	P32432	683 aa		2.56	□□□□□ -2
CLN3	YAL040C	ANP1	P32629	500 aa		2.56	□□□□□ -2
CLN3	YAL040C	YKU70	P32807	602 aa		2.56	□□□□□ -2
CLN3	YAL040C	NFU1	P32860	256 aa		2.56	□□□□□ -2
CLN3	YAL040C	RPS0A	P32905	252 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	MAL33	P38157	468 aa		2.56	□□□□□ -2
CLN3	YAL040C	CRG1	P38892	291 aa	RIP-Chip data	2.56	□□□□□ -2	not detected
CLN3	YAL040C	ENP2	P48234	707 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	YGR237C	P50089	785 aa		2.56	□□□□□ -2
CLN3	YAL040C	YGR125W	P53273	1036 aa		2.56	□□□□□ -2
CLN3	YAL040C	SUN4	P53616	420 aa		2.56	□□□□□ -2
CLN3	YAL040C	HST1	P53685	503 aa		2.56	□□□□□ -2
CLN3	YAL040C	TIF35	Q04067	274 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	SHE9	Q04172	456 aa		2.56	□□□□□ -2
CLN3	YAL040C	ENT2	Q05785	613 aa		2.56	□□□□□ -2
CLN3	YAL040C	MRD1	Q06106	887 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	SPP382	Q06411	708 aa	Predicted RBP	2.56	□□□□□ -2
CLN3	YAL040C	SPN1	Q06505	410 aa	Predicted RBP	2.56	□□□□□ -2
CLN3	YAL040C	TMA46	Q12000	345 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	FAL1	Q12099	399 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	YPL150W	Q12152	901 aa		2.56	□□□□□ -2
CLN3	YAL040C	RPL11B	Q3E757	174 aa	Predicted RBP	2.56	□□□□□ -2
CLN3	YAL040C	CIT1	P00890	479 aa		2.56	□□□□□ -2
CLN3	YAL040C	HSC82	P15108	705 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	AGP1	P25376	633 aa		2.56	□□□□□ -2
CLN3	YAL040C	RPL8B	P29453	256 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	CHS3	P29465	1165 aa		2.56	□□□□□ -2
CLN3	YAL040C	MCM4	P30665	933 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	DCG1	P32460	244 aa		2.56	□□□□□ -2
CLN3	YAL040C	STE5	P32917	917 aa		2.56	□□□□□ -2
CLN3	YAL040C	MTC2	P34246	357 aa		2.56	□□□□□ -2
CLN3	YAL040C	MRP8	P35719	219 aa		2.56	□□□□□ -2
CLN3	YAL040C	POA1	P38218	177 aa		2.56	□□□□□ -2
CLN3	YAL040C	RKM3	P38222	552 aa		2.56	□□□□□ -2
CLN3	YAL040C	YBR184W	P38299	523 aa		2.56	□□□□□ -2
CLN3	YAL040C	RPN10	P38886	268 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	MXR1	P40029	184 aa		2.56	□□□□□ -2
CLN3	YAL040C	MND2	P40577	368 aa		2.56	□□□□□ -2
CLN3	YAL040C	PFD1	P46988	109 aa		2.56	□□□□□ -2
CLN3	YAL040C	PIP2	P52960	996 aa		2.56	□□□□□ -2
CLN3	YAL040C	MTC3	P53077	123 aa		2.56	□□□□□ -2
CLN3	YAL040C	ERP6	P53198	216 aa		2.56	□□□□□ -2
CLN3	YAL040C	SQS1	P53866	767 aa	Known RBP	2.56	□□□□□ -2
CLN3	YAL040C	UBX4	P54730	416 aa		2.56	□□□□□ -2
CLN3	YAL040C	EEB1	Q02891	456 aa		2.56	□□□□□ -2
CLN3	YAL040C	UBX2	Q04228	584 aa		2.56	□□□□□ -2
CLN3	YAL040C	ESC2	Q06340	456 aa		2.56	□□□□□ -2
CLN3	YAL040C	TPO1	Q07824	586 aa		2.56	□□□□□ -2
CLN3	YAL040C	KEL3	Q08979	651 aa	Predicted RBP	2.56	□□□□□ -2
CLN3	YAL040C	DCS2	Q12123	353 aa		2.56	□□□□□ -2
CLN3	YAL040C	GRX6	Q12438	231 aa		2.56	□□□□□ -2
CLN3	YAL040C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	2.55	□□□□□ -2	not detected
CLN3	YAL040C	SRP54	P20424	541 aa	Known RBP	2.55	□□□□□ -2
CLN3	YAL040C	MAK31	P23059	88 aa		2.55	□□□□□ -2
CLN3	YAL040C	SWI4	P25302	1093 aa	Known RBP	2.55	□□□□□ -2
CLN3	YAL040C	SLA2	P33338	968 aa		2.55	□□□□□ -2
CLN3	YAL040C	YHL017W	P38745	532 aa		2.55	□□□□□ -2
CLN3	YAL040C	RTS1	P38903	757 aa		2.55	□□□□□ -2
CLN3	YAL040C	YER130C	P39959	443 aa		2.55	□□□□□ -2
CLN3	YAL040C	ZRG8	P40021	1076 aa		2.55	□□□□□ -2
CLN3	YAL040C	PEA2	P40091	420 aa		2.55	□□□□□ -2
CLN3	YAL040C	IRR1	P40541	1150 aa		2.55	□□□□□ -2
CLN3	YAL040C	DAS1	P47005	663 aa		2.55	□□□□□ -2
CLN3	YAL040C	GCV2	P49095	1034 aa		2.55	□□□□□ -2
CLN3	YAL040C	PHO23	P50947	330 aa		2.55	□□□□□ -2
CLN3	YAL040C	HFM1	P51979	1187 aa		2.55	□□□□□ -2
CLN3	YAL040C	PEX14	P53112	341 aa		2.55	□□□□□ -2
CLN3	YAL040C	RSC1	P53236	928 aa		2.55	□□□□□ -2
CLN3	YAL040C	TRM44	Q02648	567 aa	Known RBP	2.55	□□□□□ -2
CLN3	YAL040C	TFB2	Q02939	513 aa		2.55	□□□□□ -2
CLN3	YAL040C	MYO5	Q04439	1219 aa	Known RBP	2.55	□□□□□ -2
CLN3	YAL040C	SUE1	Q06524	206 aa		2.55	□□□□□ -2
CLN3	YAL040C	FMP25	Q08023	583 aa		2.55	□□□□□ -2
CLN3	YAL040C	RRG1	Q12167	365 aa	Predicted RBP	2.55	□□□□□ -2
CLN3	YAL040C	GPA1	P08539	472 aa		2.54	□□□□□ -2
CLN3	YAL040C	PGI1	P12709	554 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	ENA1	P13587	1091 aa		2.54	□□□□□ -2
CLN3	YAL040C	HPR1	P17629	752 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	RNR3	P21672	869 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	URA1	P28272	314 aa	Predicted RBP	2.54	□□□□□ -2
CLN3	YAL040C	SBA1	P28707	216 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	HIR1	P32479	840 aa		2.54	□□□□□ -2
CLN3	YAL040C	LYP1	P32487	611 aa		2.54	□□□□□ -2
CLN3	YAL040C	DEF1	P35732	738 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	NDT80	P38830	627 aa		2.54	□□□□□ -2
CLN3	YAL040C	CHS7	P38843	316 aa		2.54	□□□□□ -2
CLN3	YAL040C	PNT1	P38969	423 aa		2.54	□□□□□ -2
CLN3	YAL040C	PLB1	P39105	664 aa		2.54	□□□□□ -2
CLN3	YAL040C	VPS8	P39702	1274 aa		2.54	□□□□□ -2
CLN3	YAL040C	CCT5	P40413	562 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	HOS4	P40480	1083 aa		2.54	□□□□□ -2
CLN3	YAL040C	PCI8	P40512	444 aa		2.54	□□□□□ -2
CLN3	YAL040C	HYR1	P40581	163 aa	Known RBP	2.54	□□□□□ -2
CLN3	YAL040C	LYS14	P40971	790 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms