RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	ECM23	Q02710	187 aa		4.28	□□□□□ -1.72
VHS3	YOR054C	HEL2	Q05580	639 aa	Known RBP	4.28	□□□□□ -1.72
VHS3	YOR054C	PNP1	Q05788	311 aa		4.28	□□□□□ -1.72
VHS3	YOR054C	ESF1	Q06344	628 aa	Known RBP	4.28	□□□□□ -1.72
VHS3	YOR054C	VIP1	Q06685	1146 aa	Known RBP	4.28	□□□□□ -1.72
VHS3	YOR054C	TAF3	Q12297	353 aa		4.28	□□□□□ -1.72
VHS3	YOR054C	NOT5	Q12514	560 aa	Predicted RBP	4.28	□□□□□ -1.72
VHS3	YOR054C	LSO2	Q3E772	92 aa	Known RBP	4.28	□□□□□ -1.72
VHS3	YOR054C	MAK16	P10962	306 aa	Predicted RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	MSS116	P15424	664 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	SLY41	P22215	453 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	NIP100	P33420	868 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	TPO5	P36029	618 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	TGL4	P36165	910 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	MRX3	P38172	270 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	AVT6	P40074	448 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	CAB2	P40506	365 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	EMW1	P42842	904 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	SNX4	P47057	423 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	GNP1	P48813	663 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	UBP15	P50101	1230 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	CUE3	P53137	624 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	DUS1	P53759	423 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	TOF1	P53840	1238 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	BNI5	P53890	448 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	FRA1	Q07825	749 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	SIL1	Q08199	421 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	SMC5	Q08204	1093 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	TUM1	Q08686	304 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	RIO1	Q12196	484 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	TIP41	Q12199	356 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	NYV1	Q12255	253 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	MDM20	Q12387	796 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	DBP10	Q12389	995 aa	Known RBP	4.28	□□□□□ -1.73
VHS3	YOR054C	RKM4	Q12504	494 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	YOR111W	Q99210	232 aa		4.28	□□□□□ -1.73
VHS3	YOR054C	NMT1	P14743	455 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	POL3	P15436	1097 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	PRP9	P19736	530 aa	Known RBP	4.27	□□□□□ -1.73
VHS3	YOR054C	PEP3	P27801	918 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	IMP2'	P32351	346 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	HXT3	P32466	567 aa	Known RBP	4.27	□□□□□ -1.73
VHS3	YOR054C	SWC5	P38326	303 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	RFC3	P38629	340 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	UBP12	P39538	1254 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	DLD3	P39976	496 aa	Known RBP	4.27	□□□□□ -1.73
VHS3	YOR054C	PHB1	P40961	287 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	FAR7	P43592	221 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ALG2	P43636	503 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	RIM21	P48565	533 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	UBA2	P52488	636 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	YGR016W	P53209	190 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	TPO2	P53283	614 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	CPR6	P53691	371 aa	Known RBP	4.27	□□□□□ -1.73
VHS3	YOR054C	KIN4	Q01919	800 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ULP1	Q02724	621 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ACL4	Q03771	387 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ECI1	Q05871	280 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ARR2	Q06597	130 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	SYO1	Q07395	620 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	ATP16	Q12165	160 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	NCR1	Q12200	1170 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	SNU66	Q12420	587 aa	Predicted RBP	4.27	□□□□□ -1.73
VHS3	YOR054C	ZRT2	Q12436	422 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	TRM11	Q12463	433 aa		4.27	□□□□□ -1.73
VHS3	YOR054C	FUS1	P11710	512 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	CLN3	P13365	580 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	BMH1	P29311	267 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	RPC25	P35718	212 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	MNN2	P38069	597 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	RSC30	P38781	883 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	STN1	P38960	494 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	HXT6	P39003	570 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	HXT7	P39004	570 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	SPC105	P53148	917 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	DIP5	P53388	608 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	DCP2	P53550	970 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	UBP2	Q01476	1272 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	GDE1	Q02979	1223 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	HMO1	Q03973	246 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	GPI17	Q04080	534 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	COX20	Q04935	205 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	CDC73	Q06697	393 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	CWC2	Q12046	339 aa	Predicted RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	SEY1	Q99287	776 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	SSK22	P25390	1331 aa	Predicted RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	KIN2	P13186	1147 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	GSY1	P23337	708 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	MGM1	P32266	881 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	ACP1	P32463	125 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	HES1	P35843	434 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	PFF1	P38244	976 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	SET5	P38890	526 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	SWP82	P43554	623 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	AIP1	P46680	615 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	ATG36	P46983	293 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	IML2	P47031	731 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	YJL055W	P47044	245 aa		4.26	□□□□□ -1.73
VHS3	YOR054C	PSP2	P50109	593 aa	Known RBP	4.26	□□□□□ -1.73
VHS3	YOR054C	ATG1	P53104	897 aa		4.26	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 51.4 ms