RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W HFI1Q12060 488 aa6.72□□□□□ -1.33
CAF40YNL288W APC11Q12157 165 aa6.72□□□□□ -1.33
CAF40YNL288W HIF1Q12373 385 aa6.72□□□□□ -1.33
CAF40YNL288W DED1P06634 604 aaKnown RBP6.71□□□□□ -1.34
CAF40YNL288W GPA1P08539 472 aa6.71□□□□□ -1.34
CAF40YNL288W PCK1P10963 549 aa6.71□□□□□ -1.34
CAF40YNL288W DBP5P20449 482 aaKnown RBP6.71□□□□□ -1.34
CAF40YNL288W CDC15P27636 974 aa6.71□□□□□ -1.34
CAF40YNL288W MSS51P32335 436 aa6.71□□□□□ -1.34
CAF40YNL288W VPS35P34110 944 aa6.71□□□□□ -1.34
CAF40YNL288W RVS167P39743 482 aaKnown RBP6.71□□□□□ -1.34
CAF40YNL288W PSR2Q07949 397 aa6.71□□□□□ -1.34
CAF40YNL288W IDI1P15496 288 aa6.7□□□□□ -1.34
CAF40YNL288W SAC6P32599 642 aaKnown RBP6.7□□□□□ -1.34
CAF40YNL288W COT1P32798 439 aa6.7□□□□□ -1.34
CAF40YNL288W DID4P36108 232 aa6.7□□□□□ -1.34
CAF40YNL288W PPS1P38148 807 aa6.7□□□□□ -1.34
CAF40YNL288W ALD5P40047 520 aaKnown RBP6.7□□□□□ -1.34
CAF40YNL288W ULP2P40537 1034 aaPredicted RBP6.7□□□□□ -1.34
CAF40YNL288W AZR1P50080 613 aa6.7□□□□□ -1.34
CAF40YNL288W TDA6Q06466 467 aa6.7□□□□□ -1.34
CAF40YNL288W NOC3Q07896 663 aaPredicted RBP6.7□□□□□ -1.34
CAF40YNL288W CDC3P32457 520 aaKnown RBP6.69□□□□□ -1.34
CAF40YNL288W RPN12P32496 274 aa6.69□□□□□ -1.34
CAF40YNL288W YSC83P32792 385 aa6.69□□□□□ -1.34
CAF40YNL288W BUD2P33314 1104 aa6.69□□□□□ -1.34
CAF40YNL288W PGM2P37012 569 aaKnown RBP6.69□□□□□ -1.34
CAF40YNL288W UBP13P38187 747 aa6.69□□□□□ -1.34
CAF40YNL288W ACF4P47129 309 aa6.69□□□□□ -1.34
CAF40YNL288W VID30P53076 958 aa6.69□□□□□ -1.34
CAF40YNL288W CAF130P53280 1122 aaPredicted RBP6.69□□□□□ -1.34
CAF40YNL288W ARK1P53974 638 aa6.69□□□□□ -1.34
CAF40YNL288W YDR524C-BQ3E6R4 66 aa6.69□□□□□ -1.34
CAF40YNL288W PHO8P11491 566 aa6.68□□□□□ -1.34
CAF40YNL288W WHI2P12611 486 aa6.68□□□□□ -1.34
CAF40YNL288W RPB10P22139 70 aa6.68□□□□□ -1.34
CAF40YNL288W ROX1P25042 368 aa6.68□□□□□ -1.34
CAF40YNL288W FUB1P25659 250 aa6.68□□□□□ -1.34
CAF40YNL288W POT1P27796 417 aaKnown RBP RIP-Chip data6.68□□□□□ -1.34not detected
CAF40YNL288W DPH2P32461 534 aa6.68□□□□□ -1.34
CAF40YNL288W GRS1P38088 690 aaKnown RBP6.68□□□□□ -1.34
CAF40YNL288W NPR3P38742 1146 aa6.68□□□□□ -1.34
CAF40YNL288W RRM3P38766 723 aa6.68□□□□□ -1.34
CAF40YNL288W HUL4P40985 892 aa6.68□□□□□ -1.34
CAF40YNL288W AVT1P47082 602 aa6.68□□□□□ -1.34
CAF40YNL288W SGM1P47166 707 aa6.68□□□□□ -1.34
CAF40YNL288W RTT102P53330 157 aa6.68□□□□□ -1.34
CAF40YNL288W TOF1P53840 1238 aa6.68□□□□□ -1.34
CAF40YNL288W VMS1Q04311 632 aaKnown RBP6.68□□□□□ -1.34
CAF40YNL288W RSC2Q06488 889 aa6.68□□□□□ -1.34
CAF40YNL288W YDL057WQ07379 328 aa6.68□□□□□ -1.34
CAF40YNL288W TLG2Q08144 397 aa6.68□□□□□ -1.34
CAF40YNL288W IES4Q08561 116 aa6.68□□□□□ -1.34
CAF40YNL288W YPL277CQ08989 487 aa6.68□□□□□ -1.34
CAF40YNL288W OSW2Q12202 724 aa6.68□□□□□ -1.34
CAF40YNL288W YPR053CQ6Q5F3 151 aa6.68□□□□□ -1.34
CAF40YNL288W MOT1P32333 1867 aa6.67□□□□□ -1.34
CAF40YNL288W SMC1P32908 1225 aa6.67□□□□□ -1.34
CAF40YNL288W ARL1P38116 183 aaKnown RBP6.67□□□□□ -1.34
CAF40YNL288W ALG14P38242 237 aa6.67□□□□□ -1.34
CAF40YNL288W BCD1P38772 366 aa6.67□□□□□ -1.34
CAF40YNL288W SHE10P53075 577 aa6.67□□□□□ -1.34
CAF40YNL288W CUL3P53202 744 aa6.67□□□□□ -1.34
CAF40YNL288W YNL146WP53906 100 aa6.67□□□□□ -1.34
CAF40YNL288W TCO89Q08921 799 aa6.67□□□□□ -1.34
CAF40YNL288W OM45P16547 393 aa6.66□□□□□ -1.34
CAF40YNL288W TMT1P32643 299 aa6.66□□□□□ -1.34
CAF40YNL288W MNN4P36044 1178 aa6.66□□□□□ -1.34
CAF40YNL288W POA1P38218 177 aa6.66□□□□□ -1.34
CAF40YNL288W MCX1P38323 520 aaPredicted RBP6.66□□□□□ -1.34
CAF40YNL288W AIM46P38885 310 aa6.66□□□□□ -1.34
CAF40YNL288W TVP23P38962 199 aa6.66□□□□□ -1.34
CAF40YNL288W YIL165CP40446 119 aa6.66□□□□□ -1.34
CAF40YNL288W FOL2P51601 243 aaKnown RBP6.66□□□□□ -1.34
CAF40YNL288W NBP1P52919 319 aaPredicted RBP6.66□□□□□ -1.34
CAF40YNL288W YMR187CQ03236 431 aa6.66□□□□□ -1.34
CAF40YNL288W ECM7Q06200 448 aa6.66□□□□□ -1.34
CAF40YNL288W SPP382Q06411 708 aaPredicted RBP6.66□□□□□ -1.34
CAF40YNL288W MED1Q12321 566 aa6.66□□□□□ -1.34
CAF40YNL288W NHA1Q99271 985 aa6.66□□□□□ -1.34
CAF40YNL288W RIF1P29539 1916 aa6.66□□□□□ -1.34
CAF40YNL288W TAF13P11747 167 aa6.65□□□□□ -1.34
CAF40YNL288W SSD1P24276 1250 aaKnown RBP RIP-Chip data6.65□□□□□ -1.34not detected
CAF40YNL288W GSY2P27472 705 aa6.65□□□□□ -1.34
CAF40YNL288W NAM7P30771 971 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W SKG6P32900 734 aaPredicted RBP6.65□□□□□ -1.34
CAF40YNL288W YKL091CP33324 310 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W ERC1P38767 581 aa6.65□□□□□ -1.34
CAF40YNL288W YAP1801P38856 637 aa6.65□□□□□ -1.34
CAF40YNL288W RAD55P38953 406 aa6.65□□□□□ -1.34
CAF40YNL288W INP51P40559 946 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W CCM1P48237 864 aaPredicted RBP6.65□□□□□ -1.34
CAF40YNL288W TAM41P53230 385 aa6.65□□□□□ -1.34
CAF40YNL288W VTC3Q02725 835 aa6.65□□□□□ -1.34
CAF40YNL288W EAR1Q03212 550 aa6.65□□□□□ -1.34
CAF40YNL288W GFD1Q04839 188 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W HCR1Q05775 265 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W AFT2Q08957 416 aa6.65□□□□□ -1.34
CAF40YNL288W CDC53Q12018 815 aaKnown RBP6.65□□□□□ -1.34
CAF40YNL288W ADE2P21264 571 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms