RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	DAS1	P47005	663 aa		4.75	□□□□□ -1.65
ATG38	YLR211C	BNA2	P47125	453 aa		4.75	□□□□□ -1.65
ATG38	YLR211C	UBC11	P52492	156 aa		4.75	□□□□□ -1.65
ATG38	YLR211C	HBT1	Q07653	1046 aa	Known RBP	4.75	□□□□□ -1.65
ATG38	YLR211C	MRH1	Q12117	320 aa	Predicted RBP	4.75	□□□□□ -1.65
ATG38	YLR211C	ATG11	Q12527	1178 aa		4.75	□□□□□ -1.65
ATG38	YLR211C	ERG6	P25087	383 aa	Known RBP	4.74	□□□□□ -1.65
ATG38	YLR211C	VBA3	P25594	458 aa		4.74	□□□□□ -1.65
ATG38	YLR211C	HIR1	P32479	840 aa		4.74	□□□□□ -1.65
ATG38	YLR211C	HIS7	P33734	552 aa	Known RBP	4.74	□□□□□ -1.65
ATG38	YLR211C	STO1	P34160	861 aa	Known RBP	4.74	□□□□□ -1.65
ATG38	YLR211C	STU2	P46675	888 aa		4.74	□□□□□ -1.65
ATG38	YLR211C	PHO8	P11491	566 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	MSH2	P25847	964 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	YKR051W	P36142	418 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	ECM1	P39715	212 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	FMP52	P40008	231 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	PRP31	P49704	494 aa	Predicted RBP	4.73	□□□□□ -1.65
ATG38	YLR211C	MTL1	P53214	551 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	RIA1	P53893	1110 aa		4.73	□□□□□ -1.65
ATG38	YLR211C	SNP1	Q00916	300 aa	Predicted RBP	4.73	□□□□□ -1.65
ATG38	YLR211C	MIP6	P38760	659 aa	Known RBP	4.72	□□□□□ -1.65
ATG38	YLR211C	ARG5,6	Q01217	863 aa		4.72	□□□□□ -1.65
ATG38	YLR211C	GAD1	Q04792	585 aa		4.72	□□□□□ -1.65
ATG38	YLR211C	SGO1	Q08490	590 aa		4.72	□□□□□ -1.65
ATG38	YLR211C	YLR125W	Q12138	136 aa		4.72	□□□□□ -1.65
ATG38	YLR211C	HRP1	Q99383	534 aa	Known RBP	4.72	□□□□□ -1.65
ATG38	YLR211C	SIR3	P06701	978 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	SRD1	P09007	221 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	DSS1	P39112	969 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	YFL052W	P43551	465 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	TEL2	P53038	688 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	ARP4	P80428	489 aa		4.71	□□□□□ -1.66
ATG38	YLR211C	LEE1	Q02799	301 aa	Known RBP	4.71	□□□□□ -1.66
ATG38	YLR211C	APL2	P36000	726 aa	Predicted RBP	4.7	□□□□□ -1.66
ATG38	YLR211C	UBS1	P38290	277 aa		4.7	□□□□□ -1.66
ATG38	YLR211C	FMO1	P38866	432 aa		4.7	□□□□□ -1.66
ATG38	YLR211C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
ATG38	YLR211C	NPY1	P53164	384 aa		4.7	□□□□□ -1.66
ATG38	YLR211C	HOG1	P32485	435 aa		4.69	□□□□□ -1.66
ATG38	YLR211C	TDP1	P38319	544 aa		4.69	□□□□□ -1.66
ATG38	YLR211C	RPN10	P38886	268 aa	Known RBP	4.69	□□□□□ -1.66
ATG38	YLR211C	CCT3	P39077	534 aa	Known RBP	4.69	□□□□□ -1.66
ATG38	YLR211C	UBC9	P50623	157 aa	Predicted RBP	4.69	□□□□□ -1.66
ATG38	YLR211C	PAN2	P53010	1115 aa	Predicted RBP	4.69	□□□□□ -1.66
ATG38	YLR211C	YBP2	P53169	641 aa		4.69	□□□□□ -1.66
ATG38	YLR211C	HMO1	Q03973	246 aa	Known RBP	4.69	□□□□□ -1.66
ATG38	YLR211C	GSY1	P23337	708 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	THI4	P32318	326 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	PEX6	P33760	1030 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	GET2	P40056	285 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	GID8	P40208	455 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	CCT7	P42943	550 aa	Known RBP	4.68	□□□□□ -1.66
ATG38	YLR211C	TAH11	P47112	604 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	ORC4	P54791	529 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	SMX3	P54999	86 aa	Predicted RBP	4.68	□□□□□ -1.66
ATG38	YLR211C	YML122C	Q03207	126 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	NHX1	Q04121	633 aa		4.68	□□□□□ -1.66
ATG38	YLR211C	RAD18	P10862	487 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	PCL2	P25693	308 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	YKR018C	P36114	725 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	CBR1	P38626	284 aa	Known RBP	4.67	□□□□□ -1.66
ATG38	YLR211C	SFB3	P38810	929 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	NUP60	P39705	539 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	VPS73	P53142	486 aa	Known RBP	4.67	□□□□□ -1.66
ATG38	YLR211C	SSL2	Q00578	843 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	UGO1	Q03327	502 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	RPN7	Q06103	429 aa	Known RBP	4.67	□□□□□ -1.66
ATG38	YLR211C	MCM21	Q06675	368 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	NTG2	Q08214	380 aa		4.67	□□□□□ -1.66
ATG38	YLR211C	HMG1	P12683	1054 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	MVD1	P32377	396 aa	Known RBP	4.66	□□□□□ -1.66
ATG38	YLR211C	TRZ1	P36159	838 aa	Predicted RBP	4.66	□□□□□ -1.66
ATG38	YLR211C	HSL7	P38274	827 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	ATF1	P40353	525 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	AIM14	P53109	570 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	CTK1	Q03957	528 aa	Known RBP	4.66	□□□□□ -1.66
ATG38	YLR211C	ATG33	Q06485	197 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	MLH3	Q12083	715 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	YKL033W-A	Q86ZR7	236 aa		4.66	□□□□□ -1.66
ATG38	YLR211C	BNR1	P40450	1375 aa		4.65	□□□□□ -1.66
ATG38	YLR211C	REV7	P38927	245 aa		4.65	□□□□□ -1.67
ATG38	YLR211C	PCL10	P53124	433 aa		4.65	□□□□□ -1.67
ATG38	YLR211C	FHN1	P53279	174 aa		4.65	□□□□□ -1.67
ATG38	YLR211C	TAF3	Q12297	353 aa		4.65	□□□□□ -1.67
ATG38	YLR211C	YTA7	P40340	1379 aa		4.65	□□□□□ -1.67
ATG38	YLR211C	PYC1	P11154	1178 aa	Known RBP	4.64	□□□□□ -1.67
ATG38	YLR211C	RNR1	P21524	888 aa	Known RBP	4.64	□□□□□ -1.67
ATG38	YLR211C	KIN3	P22209	435 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	PHO11	P35842	467 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	MNN4	P36044	1178 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	PCM1	P38628	557 aa	Known RBP	4.64	□□□□□ -1.67
ATG38	YLR211C	PHO12	P38693	467 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	YNL195C	P40168	261 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	YAP1802	P53309	568 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	BRE5	P53741	515 aa	Known RBP	4.64	□□□□□ -1.67
ATG38	YLR211C	YLR001C	Q07895	862 aa		4.64	□□□□□ -1.67
ATG38	YLR211C	CCR4	P31384	837 aa	Known RBP	4.63	□□□□□ -1.67
ATG38	YLR211C	EMP70	P32802	667 aa		4.63	□□□□□ -1.67
ATG38	YLR211C	FLO10	P36170	1169 aa		4.63	□□□□□ -1.67

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