RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 PKH1Q03407 766 aa10.24□□□□□ -0.77
NME1NME1 RPS13P05756 151 aaKnown RBP10.23□□□□□ -0.77
NME1NME1 HXT6P39003 570 aaKnown RBP10.23□□□□□ -0.77
NME1NME1 HXT7P39004 570 aa10.23□□□□□ -0.77
NME1NME1 YBP2P53169 641 aa10.23□□□□□ -0.77
NME1NME1 ARP4P80428 489 aa10.23□□□□□ -0.77
NME1NME1 SLX4Q12098 748 aa10.23□□□□□ -0.77
NME1NME1 SEC21P32074 935 aaKnown RBP10.22□□□□□ -0.77
NME1NME1 DAL3P32459 195 aa10.22□□□□□ -0.77
NME1NME1 SSZ1P38788 538 aaKnown RBP10.22□□□□□ -0.77
NME1NME1 ASM4Q05166 528 aa10.21□□□□□ -0.77
NME1NME1 HFI1Q12060 488 aa10.21□□□□□ -0.77
NME1NME1 GPR1Q12361 961 aa10.21□□□□□ -0.77
NME1NME1 RPS21BQ3E754 87 aaKnown RBP10.21□□□□□ -0.77
NME1NME1 KAR1P11927 433 aa10.2□□□□□ -0.78
NME1NME1 MSS4P38994 779 aa10.2□□□□□ -0.78
NME1NME1 SKY1Q03656 742 aa10.2□□□□□ -0.78
NME1NME1 YLR224WQ05947 369 aa10.2□□□□□ -0.78
NME1NME1 YPR027CQ12079 277 aa10.2□□□□□ -0.78
NME1NME1 APM4Q99186 491 aa10.2□□□□□ -0.78
NME1NME1 TUB3P09734 445 aaKnown RBP10.19□□□□□ -0.78
NME1NME1 GAS1P22146 559 aaKnown RBP10.19□□□□□ -0.78
NME1NME1 SEC65P29478 273 aa10.19□□□□□ -0.78
NME1NME1 SEC6P32844 805 aa10.19□□□□□ -0.78
NME1NME1 SEG2P34250 1132 aa10.19□□□□□ -0.78
NME1NME1 OAF3P36023 863 aa10.19□□□□□ -0.78
NME1NME1 BIT2P38346 545 aa10.19□□□□□ -0.78
NME1NME1 PLB1P39105 664 aa10.19□□□□□ -0.78
NME1NME1 SPC105P53148 917 aa10.19□□□□□ -0.78
NME1NME1 BRE5P53741 515 aaKnown RBP10.19□□□□□ -0.78
NME1NME1 PEX19Q07418 342 aa10.19□□□□□ -0.78
NME1NME1 KCS1Q12494 1050 aa10.19□□□□□ -0.78
NME1NME1 SOD2P00447 233 aa10.18□□□□□ -0.78
NME1NME1 RPS21AP0C0V8 87 aaKnown RBP10.18□□□□□ -0.78
NME1NME1 PEA2P40091 420 aa10.18□□□□□ -0.78
NME1NME1 YLR415CO13578 112 aa10.17□□□□□ -0.78
NME1NME1 AIM3P38266 947 aaKnown RBP10.17□□□□□ -0.78
NME1NME1 EMP65P40085 556 aa10.17□□□□□ -0.78
NME1NME1 DAS1P47005 663 aa10.17□□□□□ -0.78
NME1NME1 PRP43P53131 767 aaKnown RBP10.17□□□□□ -0.78
NME1NME1 SLD3P53135 668 aa10.17□□□□□ -0.78
NME1NME1 YNL034WP53963 612 aa10.17□□□□□ -0.78
NME1NME1 YNL018CP53976 612 aa10.17□□□□□ -0.78
NME1NME1 GLT1Q12680 2145 aaKnown RBP10.17□□□□□ -0.78
NME1NME1 TSA1P34760 196 aaKnown RBP10.16□□□□□ -0.78
NME1NME1 APN2P38207 520 aa10.16□□□□□ -0.78
NME1NME1 SET2P46995 733 aaKnown RBP10.16□□□□□ -0.78
NME1NME1 RIM8P53179 542 aa10.16□□□□□ -0.78
NME1NME1 MPD2Q99316 277 aa10.16□□□□□ -0.78
NME1NME1 ATP4P05626 244 aa10.15□□□□□ -0.78
NME1NME1 BEM4P39011 633 aa10.15□□□□□ -0.78
NME1NME1 PRP31P49704 494 aaPredicted RBP10.15□□□□□ -0.78
NME1NME1 RNR4P49723 345 aaKnown RBP10.15□□□□□ -0.78
NME1NME1 TGL2P54857 326 aa10.15□□□□□ -0.78
NME1NME1 LEE1Q02799 301 aaKnown RBP10.15□□□□□ -0.78
NME1NME1 PHM6Q05637 104 aa10.15□□□□□ -0.78
NME1NME1 CDA2Q06703 312 aa10.15□□□□□ -0.78
NME1NME1 NYV1Q12255 253 aa10.15□□□□□ -0.78
NME1NME1 SWI6P09959 803 aa10.14□□□□□ -0.79
NME1NME1 COX11P19516 300 aaKnown RBP10.14□□□□□ -0.79
NME1NME1 PRP4P20053 465 aaKnown RBP10.14□□□□□ -0.79
NME1NME1 AKL1P38080 1108 aaKnown RBP10.14□□□□□ -0.79
NME1NME1 YBR259WP38338 688 aa10.14□□□□□ -0.79
NME1NME1 SIC1P38634 284 aa10.14□□□□□ -0.79
NME1NME1 YHR202WP38887 602 aa10.14□□□□□ -0.79
NME1NME1 NUG1P40010 520 aaKnown RBP10.14□□□□□ -0.79
NME1NME1 YOR378WQ08902 515 aa10.14□□□□□ -0.79
NME1NME1 TRM11Q12463 433 aa10.14□□□□□ -0.79
NME1NME1 HEM12P32347 362 aaPredicted RBP10.13□□□□□ -0.79
NME1NME1 YMR210WQ03649 449 aa10.13□□□□□ -0.79
NME1NME1 HCA4P20448 770 aaKnown RBP10.12□□□□□ -0.79
NME1NME1 CAD1P24813 409 aaKnown RBP10.12□□□□□ -0.79
NME1NME1 APT2P36973 181 aa10.12□□□□□ -0.79
NME1NME1 RPP1P38786 293 aa10.12□□□□□ -0.79
NME1NME1 YLR407WQ06070 228 aa10.12□□□□□ -0.79
NME1NME1 HIR1P32479 840 aa10.11□□□□□ -0.79
NME1NME1 FAT1P38225 669 aa10.11□□□□□ -0.79
NME1NME1 SLU7Q02775 382 aaKnown RBP10.11□□□□□ -0.79
NME1NME1 PEX15Q08215 383 aa10.11□□□□□ -0.79
NME1NME1 SST2P11972 698 aaKnown RBP10.1□□□□□ -0.79
NME1NME1 KAR4P25583 335 aa10.1□□□□□ -0.79
NME1NME1 SER1P33330 395 aaKnown RBP10.1□□□□□ -0.79
NME1NME1 ARG5,6Q01217 863 aa10.1□□□□□ -0.79
NME1NME1 NRG1Q03125 231 aa10.1□□□□□ -0.79
NME1NME1 ADE2P21264 571 aaKnown RBP10.09□□□□□ -0.79
NME1NME1 TOD6P34219 525 aa10.09□□□□□ -0.79
NME1NME1 ECM1P39715 212 aa10.09□□□□□ -0.79
NME1NME1 NOP15P53927 220 aaPredicted RBP10.09□□□□□ -0.79
NME1NME1 MCM21Q06675 368 aa10.09□□□□□ -0.79
NME1NME1 YEF3P16521 1044 aaKnown RBP10.08□□□□□ -0.8
NME1NME1 NIC96P34077 839 aa10.08□□□□□ -0.8
NME1NME1 APL2P36000 726 aaPredicted RBP10.08□□□□□ -0.8
NME1NME1 GID8P40208 455 aa10.08□□□□□ -0.8
NME1NME1 REC102Q02721 264 aa10.08□□□□□ -0.8
NME1NME1 NOP56Q12460 504 aaKnown RBP RIP-Chip data10.08□□□□□ -0.8not detected
NME1NME1 PYC1P11154 1178 aaKnown RBP10.07□□□□□ -0.8
NME1NME1 PRP6P19735 899 aaPredicted RBP10.07□□□□□ -0.8
NME1NME1 IMG2P25642 146 aaPredicted RBP10.07□□□□□ -0.8
NME1NME1 YKU70P32807 602 aa10.07□□□□□ -0.8
NME1NME1 CTF13P35203 478 aa10.07□□□□□ -0.8
Retrieved 100 of 5,963 RNA–protein pairs in 77.6 ms