RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	GIC1	P38785	314 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	CKB2	P38930	258 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	PEX14	P53112	341 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	GAS5	Q08193	484 aa		4.65	□□□□□ -1.67
UBX5	YDR330W	PSK1	P31374	1356 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	AI1	P03875	834 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	YEF3	P16521	1044 aa	Known RBP	4.64	□□□□□ -1.67
UBX5	YDR330W	PER1	P25625	357 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	RPC82	P32349	654 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	MDL2	P33311	773 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	MDJ1	P35191	511 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	PCM1	P38628	557 aa	Known RBP	4.64	□□□□□ -1.67
UBX5	YDR330W	RPN10	P38886	268 aa	Known RBP	4.64	□□□□□ -1.67
UBX5	YDR330W	MMM1	P41800	426 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	TY4A-J	P47023	414 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	YJR096W	P47137	282 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	YKE2	P52553	114 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	BUD9	P53226	547 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	COG6	P53959	839 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	RCM1	P53972	490 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	EAR1	Q03212	550 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	SND1	Q04007	877 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	YOR059C	Q08448	450 aa	Known RBP	4.64	□□□□□ -1.67
UBX5	YDR330W	YTM1	Q12024	460 aa	Predicted RBP	4.64	□□□□□ -1.67
UBX5	YDR330W	OSW2	Q12202	724 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	USO1	P25386	1790 aa		4.64	□□□□□ -1.67
UBX5	YDR330W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	AI3	P03877	415 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	RPP0	P05317	312 aa	Known RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	ATP4	P05626	244 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	SAM35	P14693	329 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	ACE2	P21192	770 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	RFA1	P22336	621 aa	Known RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	DOT6	P40059	670 aa	Known RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	DAS1	P47005	663 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	MTC3	P53077	123 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	NOG2	P53742	486 aa	Known RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	RCL1	Q08096	367 aa	Predicted RBP	4.63	□□□□□ -1.67
UBX5	YDR330W	GUP2	Q08929	609 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	NYV1	Q12255	253 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	GIN4	Q12263	1142 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	YVC1	Q12324	675 aa		4.63	□□□□□ -1.67
UBX5	YDR330W	PMC1	P38929	1173 aa	Predicted RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	GZF3	P42944	551 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	CIT3	P43635	486 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	ALY2	P47029	1046 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
UBX5	YDR330W	NHX1	Q04121	633 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	VMS1	Q04311	632 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	ATG33	Q06485	197 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	SVS1	Q12254	260 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	SNF2	P22082	1703 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	DAL7	P21826	554 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	TRK2	P28584	889 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	PEA2	P40091	420 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	VPS27	P40343	622 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	SBE2	P42223	864 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	DUG1	P43616	481 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	TAD1	P53065	400 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	ARI1	P53111	347 aa	Known RBP	4.62	□□□□□ -1.67
UBX5	YDR330W	SFB2	P53953	876 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	VPS72	Q03388	795 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	RSC58	Q07979	502 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	CDC45	Q08032	650 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	YOR378W	Q08902	515 aa		4.62	□□□□□ -1.67
UBX5	YDR330W	LEU2	P04173	364 aa	Predicted RBP	4.61	□□□□□ -1.67
UBX5	YDR330W	KAR1	P11927	433 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	HMG1	P12683	1054 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	OAF1	P39720	1047 aa	Predicted RBP	4.61	□□□□□ -1.67
UBX5	YDR330W	NPP2	P39997	493 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	AIM14	P53109	570 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	SDH1	Q00711	640 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	VPS30	Q02948	557 aa		4.61	□□□□□ -1.67
UBX5	YDR330W	CEF1	Q03654	590 aa	Predicted RBP	4.61	□□□□□ -1.67
UBX5	YDR330W	RPS9A	O13516	197 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	AEP2	P22136	580 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	PWP2	P25635	923 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	DPB3	P27344	201 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	URA1	P28272	314 aa	Predicted RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	SWE1	P32944	819 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	TFC4	P33339	1025 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	WHI3	P34761	661 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	VPS24	P36095	224 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	SAP190	P36123	1033 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	HSL7	P38274	827 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	AKR1	P39010	764 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	RLP7	P40693	322 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	SHR5	P41912	237 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	MNN11	P46985	422 aa	Known RBP	4.6	□□□□□ -1.67
UBX5	YDR330W	HFM1	P51979	1187 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	TAP42	Q04372	366 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	YDL144C	Q07589	356 aa		4.6	□□□□□ -1.67
UBX5	YDR330W	DIF1	O13577	133 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	PLC1	P32383	869 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	HIR1	P32479	840 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	ECM21	P38167	1117 aa	Known RBP	4.59	□□□□□ -1.67
UBX5	YDR330W	RFC5	P38251	354 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	MCX1	P38323	520 aa	Predicted RBP	4.59	□□□□□ -1.67
UBX5	YDR330W	YAP1801	P38856	637 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	YGR153W	P48238	217 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms