RNA–Protein interactions for RNA: YBR229C

ROT2, Transcript of Glucosidase II catalytic subunit, yeast

Gene ROT2, Length 2,865 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT2	YBR229C	VPS16	Q03308	798 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	JIP3	O13555	125 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	CDC33	P07260	213 aa	Known RBP	5.22	□□□□□ -1.57
ROT2	YBR229C	POL3	P15436	1097 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	RAD5	P32849	1169 aa	Predicted RBP	5.22	□□□□□ -1.57
ROT2	YBR229C	HEL1	P36113	551 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	PHO88	P38264	188 aa	Predicted RBP	5.22	□□□□□ -1.57
ROT2	YBR229C	TDA10	P42938	290 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	EAF6	P47128	113 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	SHR3	Q02774	210 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	SPC24	Q04477	213 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	ERV41	Q04651	352 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	FAR8	Q05040	523 aa		5.22	□□□□□ -1.57
ROT2	YBR229C	MAG2	Q06436	670 aa	Known RBP	5.22	□□□□□ -1.57
ROT2	YBR229C	YML002W	P0CF17	737 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	SPO16	P17122	198 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	DBP5	P20449	482 aa	Known RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	DBF4	P32325	704 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	VPS35	P34110	944 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	YBL055C	P34220	418 aa	Predicted RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	YKR018C	P36114	725 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	NCL1	P38205	684 aa	Known RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	PMC1	P38929	1173 aa	Predicted RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	YGR111W	P53265	400 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	CDC53	Q12018	815 aa	Known RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	RAD18	P10862	487 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	TGL1	P34163	548 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	YBR062C	P38239	180 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	ILM1	P47155	203 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	VPS72	Q03388	795 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	YDR222W	Q04925	415 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	YDR278C	Q05612	105 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	YLR177W	Q06251	628 aa		5.21	□□□□□ -1.58
ROT2	YBR229C	TDA5	Q06417	326 aa	Known RBP	5.21	□□□□□ -1.58
ROT2	YBR229C	KRS1	P15180	591 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	KAR3	P17119	729 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	SFL1	P20134	766 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
ROT2	YBR229C	KIP2	P28743	706 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	MUD1	P32605	298 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	VHC1	P38329	1120 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	MSG5	P38590	489 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	TMA22	P47089	198 aa	Predicted RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	MDR1	P53258	950 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	TMA64	Q04600	565 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	SLX4	Q12098	748 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	RPS3	P05750	240 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	SPT2	P06843	333 aa	Predicted RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	ADE3	P07245	946 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	ILV2	P07342	687 aa	Known RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	MSM1	P22438	575 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	CDC11	P32458	415 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	SWE1	P32944	819 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	STV1	P37296	890 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.2	□□□□□ -1.58	not detected
ROT2	YBR229C	ASG1	P40467	964 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	CLA4	P48562	842 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	TAM41	P53230	385 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	PTA1	Q01329	785 aa	Predicted RBP	5.2	□□□□□ -1.58
ROT2	YBR229C	ACM1	Q08981	209 aa		5.2	□□□□□ -1.58
ROT2	YBR229C	HEM15	P16622	393 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	TRM2	P33753	639 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	SET3	P36124	751 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	SSP1	P38871	571 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	YER156C	P40093	338 aa	Known RBP	5.19	□□□□□ -1.58
ROT2	YBR229C	ATG1	P53104	897 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	GTR1	Q00582	310 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	SPH1	Q06160	661 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	MPC54	Q08550	464 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	SEC39	Q12745	709 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	TY1B-A	O13527	1196 aa	Known RBP	5.19	□□□□□ -1.58
ROT2	YBR229C	GCR1	P07261	785 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	PMS1	P14242	873 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	PHO86	P46956	311 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	CRD1	Q07560	283 aa		5.19	□□□□□ -1.58
ROT2	YBR229C	PRP4	P20053	465 aa	Known RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	COT1	P32798	439 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	RIM101	P33400	625 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	PTC3	P34221	468 aa	Known RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	ACA1	P39970	489 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	NPP2	P39997	493 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	YMR134W	P40207	237 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	NIT1	P40447	199 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	ATG36	P46983	293 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	RPA49	Q01080	415 aa	Predicted RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	YPL109C	Q02981	657 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	YML037C	Q03703	340 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	PPM1	Q04081	328 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	SHE9	Q04172	456 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	SUB2	Q07478	446 aa	Known RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	PUS1	Q12211	544 aa	Known RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	CBF1	P17106	351 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	VMA1	P17255	1071 aa	Known RBP	5.18	□□□□□ -1.58
ROT2	YBR229C	BAS1	P22035	811 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	SWI3	P32591	825 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	RRN6	P32786	894 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	ATG19	P35193	415 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	CSG2	P35206	410 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	CCL1	P37366	393 aa		5.18	□□□□□ -1.58
ROT2	YBR229C	YBR032W	P38223	100 aa		5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms