RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Foxp4Q9DBY0 795 aaKnown RBP18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Znf521Q6KAS7 1311 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Abca8bQ8K440 1620 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Fam160b2Q80YR2 744 aa18.03■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Pet2A2AHY8 747 aa18.02■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Tlr7P58681 1050 aa18.02■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 NsmfQ99NF2 532 aa18.02■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Kcna6Q61923 529 aa18.02■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Stxbp4Q9WV89 557 aa18.02■□□□□ 0.48
Ccdc88b-201ENSMUST00000113440 Zfyve16Q80U44 1528 aa18.02■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Trim55G3X8Y1 545 aa18.02■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ppm1eQ80TL0 749 aa18.02■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Fam170aQ66LM6 333 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Lmbr1Q9JIT0 490 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Timm10P62073 90 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Esyt1Q3U7R1 1092 aaKnown RBP18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ano1Q8BHY3 960 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ncbp1Q3UYV9 790 aaKnown RBP18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Rnf41Q8BH75 317 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Atg3Q9CPX6 314 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Pip4k2aO70172 405 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Nek11Q8C0Q4 628 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Rufy3Q9D394 469 aa18.01■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Med14A2ABV5 1459 aaKnown RBP18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Tango6Q8C3S2 1079 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Lrrfip2Q91WK0 415 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Gnl2Q99LH1 728 aaKnown RBP18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Lmbrd2Q8C561 694 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Card10P58660 1021 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 U2af1l4Q8BGJ9 220 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Trim11Q99PQ2 467 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Izumo3A6PWV3 263 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Jakmip2D3YXK0 820 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Znf653Q6YND2 615 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ppp1r10Q80W00 888 aaKnown RBP18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Larp6Q8BN59 492 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Slc14a2Q8R4T9 930 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Luzp1Q8R4U7 1068 aaKnown RBP18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Kdm6aO70546 1401 aa18■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Galntl5Q9D4M9 431 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ndufa8Q9DCJ5 172 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Metap2O08663 478 aaKnown RBP17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Mtmr3Q8K296 1196 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ddb1Q3U1J4 1140 aaKnown RBP17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Gps2Q921N8 327 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ppp4r3bQ922R5 820 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Rdm1Q9CQK3 281 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Wdhd1P59328 1117 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Arhgef1Q61210 920 aaKnown RBP17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Gimap8Q75N62 688 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Cnot6lQ8VEG6 555 aa17.99■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Phldb2Q8K1N2 1249 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Tmc2Q8R4P4 888 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Dhx38Q80X98 1228 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Serpina10Q8R121 448 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Rapgef3Q8VCC8 918 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Tmem143Q8VD26 458 aa17.98■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Lamb3Q61087 1168 aa17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Lmod1Q8BVA4 595 aa17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 CoilQ5SU73 570 aa17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Atf5O70191 283 aa17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 CebpzP53569 1052 aaKnown RBP17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Stx1aO35526 288 aa17.97■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 ShprhQ7TPQ3 1674 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Asic4Q7TNS7 539 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 DymQ8CHY3 669 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Stim1P70302 685 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Bend3Q6PAL0 825 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Knl1Q66JQ7 1612 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Ncapd2Q8K2Z4 1392 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Adora1Q60612 326 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Rbm17Q8JZX4 405 aaKnown RBP17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 CenpqQ9CPQ5 267 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 MicalclQ9D5U9 680 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Sil1Q9EPK6 465 aa17.96■□□□□ 0.47
Ccdc88b-201ENSMUST00000113440 Sass6Q80UK7 654 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Tgfb1i1Q62219 461 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Zbtb43Q9DAI4 467 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Prl3d3A0A0M6L0J6 224 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ccdc112A0AUP1 442 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Zscan29E9Q5B4 869 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 RarsQ9D0I9 660 aaKnown RBP17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Itsn2Q9Z0R6 1659 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Adgrb3Q80ZF8 1522 aa17.95■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Spg7Q3ULF4 781 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Scaf1Q5U4C3 1256 aaKnown RBP17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ncoa4Q5U4H9 625 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Dnm1P39053 867 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 ItpripQ3TNL8 555 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Map9Q3TRR0 646 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Tyro3P55144 880 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Fnbp4Q6ZQ03 1031 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Cep120Q7TSG1 988 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Rps6kb1Q8BSK8 525 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Rbm19Q8R3C6 952 aaKnown RBP17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Rab3gap1Q80UJ7 981 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ccdc150Q8CDI7 1110 aa17.94■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Sult6b1P0CC03 303 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Ccdc83Q9D4V3 305 aa17.93■□□□□ 0.46
Ccdc88b-201ENSMUST00000113440 Gm7347D3YYI9 267 aa17.93■□□□□ 0.46
Retrieved 100 of 22,080 RNA–protein pairs in 78.2 ms